Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007596

Physical Location & Seq

Genomic Coordinates Reverse (-)

6587476 .. 6590052

Gene Structure 2577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026863

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCTATTGTGAAGGTGGAAGTGGTGGTGGCTACAACCGTGGAAGAGGAGATGGAGGCAGCAGAGGCGATGCCTAAGGAGGTGGTGGCTGGGACAGTGGATTTGCTAGCGGGAGCTGGAGATCTGTTGCTTTCGAGATTTGTTGCTCTGTCAAACTTTCGATCTGGACATCCTTCTCGACACCCAATCGCCGCCACCTCCCTCACCCTGGCCCCGTCGTCCCTCGCCCCTGAGATCGAGAAGGCGACGCTCTTTGACTTCGATCTGCCTGCCAATCCAGGCTGTCCAGTTCCTCCTCCTCATGCTGGCCCTCGACAAGATCTACTACTCGCTGCTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

11.69

Weight (kDa)

4.71

Isoelectric Point (pI)

54.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32260
fragaria_vesca	FvH4_5g30810 FvH4_5g32992 FvH4_7g16720
malus_domestica	MD15G1126100.v1.1
prunus_persica	Prupe.1G482000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429151 RchiOBHm_Chr5g0054961 RchiOBHm_Chr6g0297791
rosa_laevigata	RLG00000026863
rosa_multiflora	Rmu_sc0002438.1_g000015 Rmu_sc0002674.1_g000016 Rmu_sc0003108.1_g000005 Rmu_sc0003162.1_g000005 Rmu_sc0021574.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034140 Rroxscaffold_5G00364670 Rroxscaffold_6G00408390
rosa_samantha	Rh4CG310800 Rh4DG437300 Rh5DG384100 Rh6AG386100 Rh6BG394700 Rh6CG400400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	110, 192
AfiI	CCNNNNNNNGG	2 cut(s)	208, 305
AjnI	CCWGG	2 cut(s)	207, 277
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
AoxI	GGCC	2 cut(s)	210, 307
ApeKI	GCWGC	2 cut(s)	59, 332
ArsI	GACNNNNNNTTYG	2 cut(s)	85, 117
AspS9I	GGNCC	2 cut(s)	211, 308
AsuHPI	GGTGA	1 cut(s)	196
AsuNHI	GCTAGC	1 cut(s)	106
AxyI	CCTNAGG	1 cut(s)	75
BbvI	GCAGC	2 cut(s)	71, 319
BccI	CCATC	1 cut(s)	46
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BciT130I	CCWGG	2 cut(s)	209, 279
BfaI	CTAG	1 cut(s)	107
BglII	AGATCT	2 cut(s)	121, 319
BisI	GCNGC	3 cut(s)	60, 192, 333
BlsI	GCNGC	3 cut(s)	61, 193, 334
Bme1390I	CCNGG	2 cut(s)	209, 279
BmgT120I	GGNCC	2 cut(s)	211, 308
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	2 cut(s)	209, 279
BmsI	GCATC	1 cut(s)	60
BmtI	GCTAGC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	39, 207
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 305
Bse1I	ACTGG	1 cut(s)	287
Bse21I	CCTNAGG	1 cut(s)	75
BseBI	CCWGG	2 cut(s)	209, 279
BseDI	CCNNGG	2 cut(s)	39, 207
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	2 cut(s)	208, 305
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	287
BseRI	GAGGAG	3 cut(s)	62, 285, 288
BseXI	GCAGC	2 cut(s)	71, 319
BseYI	CCCAGC	2 cut(s)	89, 335
BshFI	GGCC	2 cut(s)	212, 309
BslFI	GGGAC	2 cut(s)	106, 205
BslI	CCNNNNNNNGG	2 cut(s)	208, 305
BsmFI	GGGAC	2 cut(s)	106, 205
BsnI	GGCC	2 cut(s)	212, 309
Bsp143I	GATC	5 cut(s)	121, 161, 234, 262, 319
BspACI	CCGC	2 cut(s)	110, 192
BspANI	GGCC	2 cut(s)	212, 309
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	213
BspOI	GCTAGC	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	287
BssECI	CCNNGG	2 cut(s)	39, 207
BssMI	GATC	5 cut(s)	121, 161, 234, 262, 319
Bst2UI	CCWGG	2 cut(s)	209, 279
Bst4CI	ACNGT	2 cut(s)	40, 97
Bst6I	CTCTTC	1 cut(s)	39
BstC8I	GCNNGC	3 cut(s)	108, 270, 307
BstDEI	CTNAG	2 cut(s)	75, 231
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	169
BstKTI	GATC	5 cut(s)	124, 164, 237, 265, 322
BstMBI	GATC	5 cut(s)	121, 161, 234, 262, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	2 cut(s)	209, 279
BstSCI	CCNGG	2 cut(s)	207, 277
BstV1I	GCAGC	2 cut(s)	71, 319
BstX2I	RGATCY	2 cut(s)	121, 319
BstYI	RGATCY	2 cut(s)	121, 319
Bsu36I	CCTNAGG	1 cut(s)	75
BsuRI	GGCC	2 cut(s)	212, 309
BtgI	CCRYGG	1 cut(s)	39
BtgZI	GCGATG	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	3 cut(s)	108, 270, 307
Cfr13I	GGNCC	2 cut(s)	211, 308
CseI	GACGC	1 cut(s)	256
CviAII	CATG	1 cut(s)	302
CviJI	RGCY	7 cut(s)	5, 32, 89, 116, 212, 282, 309
CviKI_1	RGCY	7 cut(s)	5, 32, 89, 116, 212, 282, 309
DdeI	CTNAG	2 cut(s)	75, 231
DpnI	GATC	5 cut(s)	123, 163, 236, 264, 321
DpnII	GATC	5 cut(s)	121, 161, 234, 262, 319
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco81I	CCTNAGG	1 cut(s)	75
EcoRII	CCWGG	2 cut(s)	207, 277
FaeI	CATG	1 cut(s)	305
FaiI	YATR	1 cut(s)	303
FaqI	GGGAC	2 cut(s)	106, 205
FatI	CATG	1 cut(s)	301
FauI	CCCGC	1 cut(s)	103
Fnu4HI	GCNGC	3 cut(s)	60, 192, 333
FokI	GGATG	1 cut(s)	156
Fsp4HI	GCNGC	3 cut(s)	60, 192, 333
FspBI	CTAG	1 cut(s)	107
GluI	GCNGC	3 cut(s)	60, 192, 333
GsaI	CCCAGC	2 cut(s)	93, 339
GsuI	CTGGAG	1 cut(s)	138
HaeIII	GGCC	2 cut(s)	212, 309
HgaI	GACGC	1 cut(s)	256
Hin1II	CATG	1 cut(s)	305
HphI	GGTGA	1 cut(s)	196
Hpy188III	TCNNGA	4 cut(s)	135, 165, 177, 238
Hpy99I	CGWCG	2 cut(s)	220, 250
HpyAV	CCTTC	3 cut(s)	7, 183, 235
HpyCH4III	ACNGT	2 cut(s)	40, 97
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	2 cut(s)	75, 231
Hsp92II	CATG	1 cut(s)	305
Kzo9I	GATC	5 cut(s)	121, 161, 234, 262, 319
LmnI	GCTCC	1 cut(s)	113
Lsp1109I	GCAGC	2 cut(s)	71, 319
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	1 cut(s)	107
MalI	GATC	5 cut(s)	123, 163, 236, 264, 321
MboI	GATC	5 cut(s)	121, 161, 234, 262, 319
MboII	GAAGA	1 cut(s)	56
MflI	RGATCY	2 cut(s)	121, 319
MspR9I	CCNGG	2 cut(s)	209, 279
MvaI	CCWGG	2 cut(s)	209, 279
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	5 cut(s)	121, 161, 234, 262, 319
NheI	GCTAGC	1 cut(s)	106
NlaIII	CATG	1 cut(s)	305
NlaIV	GGNNCC	1 cut(s)	213
PkrI	GCNGC	3 cut(s)	61, 193, 334
Psp6I	CCWGG	2 cut(s)	207, 277
PspFI	CCCAGC	2 cut(s)	89, 335
PspGI	CCWGG	2 cut(s)	207, 277
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	2 cut(s)	211, 308
PsuI	RGATCY	2 cut(s)	121, 319
SatI	GCNGC	3 cut(s)	60, 192, 333
Sau3AI	GATC	5 cut(s)	121, 161, 234, 262, 319
Sau96I	GGNCC	2 cut(s)	211, 308
ScrFI	CCNGG	2 cut(s)	209, 279
SetI	ASST	4 cut(s)	18, 84, 118, 200
SfaNI	GCATC	1 cut(s)	60
SsiI	CCGC	2 cut(s)	110, 192
SspMI	CTAG	1 cut(s)	107
StyD4I	CCNGG	2 cut(s)	207, 277
TaaI	ACNGT	2 cut(s)	40, 97
TaqI	TCGA	6 cut(s)	134, 160, 178, 237, 261, 313
TauI	GCSGC	1 cut(s)	194
TscAI	CASTG	1 cut(s)	102
TseI	GCWGC	2 cut(s)	59, 332
TspRI	CASTG	1 cut(s)	102
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.