Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002674.1

Orthogroup ID

OG0007596

Physical Location & Seq

Genomic Coordinates Reverse (-)

48861 .. 49493

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002674.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atggccaacatgataatggcctcctccaaggtcccaatctcctcggcggccccttcccccattgccaagcccaagctcgtccccgtccaaatctccatccccaagctcaccaaaccccacctcctccaatccctcaaatccctctccctaatcgccgccacctccctcaccgtcgccccgccgtccctcgccgccgagatcgagaaggcggcgctcttcgacttcgacctgaccctgccgatccaggccgtccagttcctcctcctcatggtggcccttgacaagatctactactcgccgctcggtaagttcatggacgagcgcgactccgacatcagggagaagctggggagcgtgaaggacacgtcggcggaggtgaagcagctggaggagcagggcgtggcgatcatgagggcggcgagggcggagatatcggcggcgctgtcgaagatgaagaaggagacccaggcggaggtggaggtgaagctggcggaggggaggaagaaggtggaggcagagttgcaggaggccttggggaaactggaggagcagaaggaggagaccttgaagtccttggacgcccagattgctaatctcagtgaccaaattgtcaagaaggttcttcctctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_B ubiquitin

Protein Analysis

210

Amino Acids

22.83

Weight (kDa)

6.65

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32260
fragaria_vesca	FvH4_5g30810 FvH4_5g32992 FvH4_7g16720
malus_domestica	MD15G1126100.v1.1
prunus_persica	Prupe.1G482000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429151 RchiOBHm_Chr5g0054961 RchiOBHm_Chr6g0297791
rosa_laevigata	RLG00000026863
rosa_multiflora	Rmu_sc0002438.1_g000015 Rmu_sc0002674.1_g000016 Rmu_sc0003108.1_g000005 Rmu_sc0003162.1_g000005 Rmu_sc0021574.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034140 Rroxscaffold_5G00364670 Rroxscaffold_6G00408390
rosa_samantha	Rh4CG310800 Rh4DG437300 Rh5DG384100 Rh6AG386100 Rh6BG394700 Rh6CG400400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	568, 608
AccBSI	CCGCTC	1 cut(s)	301
AccII	CGCG	1 cut(s)	324
AclWI	GGATC	1 cut(s)	235
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	579
AfiI	CCNNNNNNNGG	4 cut(s)	268, 271, 336, 472
AflIII	ACRYGT	1 cut(s)	363
AgsI	TTSAA	1 cut(s)	568
AjiI	CACGTC	1 cut(s)	366
AjnI	CCWGG	2 cut(s)	243, 465
AluBI	AGCT	5 cut(s)	76, 106, 346, 385, 487
AluI	AGCT	5 cut(s)	76, 106, 346, 385, 487
Alw26I	GTCTC	2 cut(s)	455, 554
AlwI	GGATC	1 cut(s)	235
AoxI	GGCC	6 cut(s)	3, 18, 48, 246, 273, 528
ApeKI	GCWGC	1 cut(s)	382
AspLEI	GCGC	3 cut(s)	214, 324, 442
AspS9I	GGNCC	3 cut(s)	31, 49, 274
AsuHPI	GGTGA	4 cut(s)	100, 160, 388, 493
AvaII	GGWCC	1 cut(s)	31
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	394
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	2 cut(s)	166, 233
BciT130I	CCWGG	2 cut(s)	245, 467
BcoDI	GTCTC	2 cut(s)	455, 554
BfoI	RGCGCY	2 cut(s)	215, 443
BglII	AGATCT	1 cut(s)	285
BisI	GCNGC	8 cut(s)	48, 156, 192, 210, 299, 383, 417, 438
BlsI	GCNGC	8 cut(s)	49, 157, 193, 211, 300, 384, 418, 439
Bme1390I	CCNGG	2 cut(s)	245, 467
Bme18I	GGWCC	1 cut(s)	31
BmgBI	CACGTC	1 cut(s)	366
BmgT120I	GGNCC	3 cut(s)	31, 49, 274
BmiI	GGNNCC	2 cut(s)	33, 51
BmrFI	CCNGG	2 cut(s)	245, 467
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BpmI	CTGGAG	2 cut(s)	407, 563
BsaHI	GRCGYC	1 cut(s)	579
BsaI	GGTCTC	2 cut(s)	455, 554
BsaJI	CCNNGG	5 cut(s)	27, 42, 465, 531, 573
BsaXI	ACNNNNNCTCC	4 cut(s)	105, 135, 503, 533
Bsc4I	CCNNNNNNNGG	4 cut(s)	268, 271, 336, 472
Bse1I	ACTGG	2 cut(s)	253, 546
Bse3DI	GCAATG	1 cut(s)	60
BseBI	CCWGG	2 cut(s)	245, 467
BseDI	CCNNGG	5 cut(s)	27, 42, 465, 531, 573
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	4 cut(s)	268, 271, 336, 472
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	610
BseNI	ACTGG	2 cut(s)	253, 546
BseRI	GAGGAG	8 cut(s)	13, 31, 113, 251, 254, 404, 560, 572
BseXI	GCAGC	1 cut(s)	394
BseYI	CCCAGC	1 cut(s)	346
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	6 cut(s)	5, 20, 50, 248, 275, 530
BslFI	GGGAC	3 cut(s)	17, 65, 169
BslI	CCNNNNNNNGG	4 cut(s)	268, 271, 336, 472
BsmAI	GTCTC	2 cut(s)	455, 554
BsmFI	GGGAC	3 cut(s)	17, 65, 169
BsnI	GGCC	6 cut(s)	5, 20, 50, 248, 275, 530
Bso31I	GGTCTC	2 cut(s)	455, 554
Bsp143I	GATC	4 cut(s)	198, 240, 285, 405
BspANI	GGCC	6 cut(s)	5, 20, 50, 248, 275, 530
BspCNI	CTCAG	1 cut(s)	609
BspFNI	CGCG	1 cut(s)	324
BspHI	TCATGA	1 cut(s)	408
BspLI	GGNNCC	2 cut(s)	33, 51
BspPI	GGATC	1 cut(s)	235
BspQI	GCTCTTC	1 cut(s)	221
BspTNI	GGTCTC	2 cut(s)	455, 554
BsrBI	CCGCTC	1 cut(s)	301
BsrDI	GCAATG	1 cut(s)	60
BsrI	ACTGG	2 cut(s)	253, 546
BssECI	CCNNGG	5 cut(s)	27, 42, 465, 531, 573
BssMI	GATC	4 cut(s)	198, 240, 285, 405
BssNI	GRCGYC	1 cut(s)	579
BssT1I	CCWWGG	3 cut(s)	27, 531, 573
Bst2UI	CCWGG	2 cut(s)	245, 467
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	1 cut(s)	221
BstACI	GRCGYC	1 cut(s)	579
BstC8I	GCNNGC	1 cut(s)	489
BstDEI	CTNAG	1 cut(s)	596
BstF5I	GGATG	1 cut(s)	96
BstFNI	CGCG	1 cut(s)	324
BstH2I	RGCGCY	2 cut(s)	215, 443
BstHHI	GCGC	3 cut(s)	214, 324, 442
BstKTI	GATC	4 cut(s)	201, 243, 288, 408
BstMAI	GTCTC	2 cut(s)	455, 554
BstMBI	GATC	4 cut(s)	198, 240, 285, 405
BstMWI	GCNNNNNNNGC	3 cut(s)	391, 422, 587
BstNI	CCWGG	2 cut(s)	245, 467
BstSCI	CCNGG	2 cut(s)	243, 465
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	1 cut(s)	394
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
BsuRI	GGCC	6 cut(s)	5, 20, 50, 248, 275, 530
BtrI	CACGTC	1 cut(s)	366
BtsCI	GGATG	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	604
Cac8I	GCNNGC	1 cut(s)	489
CciI	TCATGA	1 cut(s)	408
CfoI	GCGC	3 cut(s)	214, 324, 442
Cfr13I	GGNCC	3 cut(s)	31, 49, 274
CseI	GACGC	1 cut(s)	587
CviAII	CATG	4 cut(s)	10, 268, 313, 409
DdeI	CTNAG	1 cut(s)	596
DpnI	GATC	4 cut(s)	200, 242, 287, 407
DpnII	GATC	4 cut(s)	198, 240, 285, 405
DrdI	GACNNNNNNGTC	2 cut(s)	568, 608
DseDI	GACNNNNNNGTC	2 cut(s)	568, 608
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
EciI	GGCGGA	4 cut(s)	386, 440, 485, 506
Eco130I	CCWWGG	3 cut(s)	27, 531, 573
Eco147I	AGGCCT	1 cut(s)	530
Eco31I	GGTCTC	2 cut(s)	455, 554
Eco32I	GATATC	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	31
EcoRII	CCWGG	2 cut(s)	243, 465
EcoRV	GATATC	1 cut(s)	432
EcoT14I	CCWWGG	3 cut(s)	27, 531, 573
ErhI	CCWWGG	3 cut(s)	27, 531, 573
FaeI	CATG	4 cut(s)	13, 271, 316, 412
FaiI	YATR	4 cut(s)	11, 269, 314, 410
FaqI	GGGAC	3 cut(s)	17, 65, 169
FatI	CATG	4 cut(s)	9, 267, 312, 408
FauI	CCCGC	1 cut(s)	186
Fnu4HI	GCNGC	8 cut(s)	48, 156, 192, 210, 299, 383, 417, 438
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	8 cut(s)	48, 156, 192, 210, 299, 383, 417, 438
GlaI	GCGC	3 cut(s)	213, 323, 441
GluI	GCNGC	8 cut(s)	48, 156, 192, 210, 299, 383, 417, 438
GsaI	CCCAGC	1 cut(s)	350
GsuI	CTGGAG	2 cut(s)	407, 563
HaeII	RGCGCY	2 cut(s)	215, 443
HaeIII	GGCC	6 cut(s)	5, 20, 50, 248, 275, 530
HgaI	GACGC	1 cut(s)	587
HhaI	GCGC	3 cut(s)	214, 324, 442
Hin1I	GRCGYC	1 cut(s)	579
Hin1II	CATG	4 cut(s)	13, 271, 316, 412
Hin6I	GCGC	3 cut(s)	212, 322, 440
HinP1I	GCGC	3 cut(s)	212, 322, 440
HinfI	GANTC	1 cut(s)	326
HphI	GGTGA	4 cut(s)	100, 160, 388, 493
Hpy188I	TCNGA	1 cut(s)	331
Hpy188III	TCNNGA	3 cut(s)	202, 409, 613
Hpy99I	CGWCG	2 cut(s)	176, 370
HpyAV	CCTTC	7 cut(s)	63, 199, 352, 451, 499, 547, 610
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	365
HpyCH4V	TGCA	1 cut(s)	523
HpyF10VI	GCNNNNNNNGC	3 cut(s)	391, 422, 587
HpyF3I	CTNAG	1 cut(s)	596
HpySE526I	ACGT	1 cut(s)	365
Hsp92I	GRCGYC	1 cut(s)	579
Hsp92II	CATG	4 cut(s)	13, 271, 316, 412
HspAI	GCGC	3 cut(s)	212, 322, 440
Kzo9I	GATC	4 cut(s)	198, 240, 285, 405
LguI	GCTCTTC	1 cut(s)	221
LmnI	GCTCC	3 cut(s)	351, 391, 547
Lsp1109I	GCAGC	1 cut(s)	394
MaeII	ACGT	1 cut(s)	365
MaeIII	GTNAC	1 cut(s)	599
MalI	GATC	4 cut(s)	200, 242, 287, 407
MbiI	CCGCTC	1 cut(s)	301
MboI	GATC	4 cut(s)	198, 240, 285, 405
MboII	GAAGA	5 cut(s)	208, 460, 466, 514, 614
MflI	RGATCY	1 cut(s)	285
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	606
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	354
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	385
MspR9I	CCNGG	2 cut(s)	245, 467
MvaI	CCWGG	2 cut(s)	245, 467
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	3 cut(s)	391, 422, 587
NdeII	GATC	4 cut(s)	198, 240, 285, 405
NlaIII	CATG	4 cut(s)	13, 271, 316, 412
NlaIV	GGNNCC	2 cut(s)	33, 51
NmeAIII	GCCGAG	2 cut(s)	23, 220
NmuCI	GTSAC	1 cut(s)	599
PagI	TCATGA	1 cut(s)	408
PceI	AGGCCT	1 cut(s)	530
PciSI	GCTCTTC	1 cut(s)	221
PkrI	GCNGC	8 cut(s)	49, 157, 193, 211, 300, 384, 418, 439
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
PpuMI	RGGWCCY	1 cut(s)	31
Psp5II	RGGWCCY	1 cut(s)	31
Psp6I	CCWGG	2 cut(s)	243, 465
PspFI	CCCAGC	1 cut(s)	346
PspGI	CCWGG	2 cut(s)	243, 465
PspN4I	GGNNCC	2 cut(s)	33, 51
PspPI	GGNCC	3 cut(s)	31, 49, 274
PspPPI	RGGWCCY	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	285
PvuII	CAGCTG	1 cut(s)	385
RseI	CAYNNNNRTG	1 cut(s)	14
SapI	GCTCTTC	1 cut(s)	221
SatI	GCNGC	8 cut(s)	48, 156, 192, 210, 299, 383, 417, 438
Sau3AI	GATC	4 cut(s)	198, 240, 285, 405
Sau96I	GGNCC	3 cut(s)	31, 49, 274
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	2 cut(s)	245, 467
SinI	GGWCC	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	14
Sse9I	AATT	1 cut(s)	606
SseBI	AGGCCT	1 cut(s)	530
StuI	AGGCCT	1 cut(s)	530
StyD4I	CCNGG	2 cut(s)	243, 465
StyI	CCWWGG	3 cut(s)	27, 531, 573
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	368
TaqI	TCGA	4 cut(s)	201, 219, 225, 446
TasI	AATT	1 cut(s)	606
TauI	GCSGC	7 cut(s)	50, 158, 194, 212, 301, 419, 440
TscAI	CASTG	1 cut(s)	604
TseFI	GTSAC	1 cut(s)	599
TseI	GCWGC	1 cut(s)	382
Tsp45I	GTSAC	1 cut(s)	599
TspDTI	ATGAA	2 cut(s)	301, 467
TspRI	CASTG	1 cut(s)	604
VpaK11BI	GGWCC	1 cut(s)	31
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.