Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007596

Physical Location & Seq

Genomic Coordinates Forward (+)

21678210 .. 21678940

Gene Structure 731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g30810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCCAACATGATAATGGCCTCCTCCAAGGTCCCAATCTTGACAGTTGCTTCCACCATAGCCAAGCCCAAGCTCCACCCTCTCCGAATCTCCATTCCCAAAACCCTTGCCAAACCCCACCTCCACCACTCTCTCAAATCCATCTCCGTCATGCCGCCATCTCCCTCGCCTTGGCGCCGCCGTCCCTCGCCATGGAGATTGAGAAGGCGCGCTGTTCGACTTCGACCTCATCTTCCTAATCTAGGCCGTGCAGTTCCTTCTCCTCATGGCGGCGAGAGAGAGAGAGAAGATCTGAAACAAAGCGGAGAAAGAGAGATAAGAGGCGAGATTGTGCTCTTGCCTGTGTGTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002933 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016053 GO:0016491 GO:0016705 GO:0016709 GO:0019438 GO:0019748 GO:0019752 GO:0022414 GO:0022607 GO:0030198 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0042221 GO:0043062 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044550 GO:0045229 GO:0046394 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050896 GO:0051791 GO:0051792 GO:0052722 GO:0055114 GO:0061458 GO:0071704 GO:0071840 GO:0072330 GO:0080110 GO:0085029 GO:0090567 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR p450

Protein Analysis

118

Amino Acids

13.2

Weight (kDa)

11.84

Isoelectric Point (pI)

80.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32260
fragaria_vesca	FvH4_5g30810 FvH4_5g32992 FvH4_7g16720
malus_domestica	MD15G1126100.v1.1
prunus_persica	Prupe.1G482000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429151 RchiOBHm_Chr5g0054961 RchiOBHm_Chr6g0297791
rosa_laevigata	RLG00000026863
rosa_multiflora	Rmu_sc0002438.1_g000015 Rmu_sc0002674.1_g000016 Rmu_sc0003108.1_g000005 Rmu_sc0003162.1_g000005 Rmu_sc0021574.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034140 Rroxscaffold_5G00364670 Rroxscaffold_6G00408390
rosa_samantha	Rh4CG310800 Rh4DG437300 Rh5DG384100 Rh6AG386100 Rh6BG394700 Rh6CG400400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	174
AccII	CGCG	1 cut(s)	210
AciI	CCGC	4 cut(s)	155, 178, 270, 303
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	175
AfiI	CCNNNNNNNGG	4 cut(s)	171, 192, 242, 269
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
Alw21I	GWGCWC	1 cut(s)	336
AoxI	GGCC	3 cut(s)	3, 18, 244
AspLEI	GCGC	3 cut(s)	177, 210, 212
AspS9I	GGNCC	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	31
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	336
BccI	CCATC	2 cut(s)	149, 166
BceAI	ACGGC	2 cut(s)	165, 231
BfaI	CTAG	2 cut(s)	242, 352
BfoI	RGCGCY	1 cut(s)	178
BglII	AGATCT	1 cut(s)	289
BisI	GCNGC	3 cut(s)	155, 178, 271
BlsI	GCNGC	3 cut(s)	156, 179, 272
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	2 cut(s)	33, 176
BsaHI	GRCGYC	1 cut(s)	175
BsaJI	CCNNGG	3 cut(s)	27, 170, 191
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	4 cut(s)	171, 192, 242, 269
BseDI	CCNNGG	3 cut(s)	27, 170, 191
BseLI	CCNNNNNNNGG	4 cut(s)	171, 192, 242, 269
BsePI	GCGCGC	1 cut(s)	208
BseRI	GAGGAG	2 cut(s)	13, 252
BsgI	GTGCAG	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	3 cut(s)	5, 20, 246
BshNI	GGYRCC	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	336
BslFI	GGGAC	2 cut(s)	17, 168
BslI	CCNNNNNNNGG	4 cut(s)	171, 192, 242, 269
BsmFI	GGGAC	2 cut(s)	17, 168
BsnI	GGCC	3 cut(s)	5, 20, 246
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	1 cut(s)	289
Bsp19I	CCATGG	1 cut(s)	191
BspACI	CCGC	4 cut(s)	155, 178, 270, 303
BspANI	GGCC	3 cut(s)	5, 20, 246
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	33, 176
BspT107I	GGYRCC	1 cut(s)	174
BssECI	CCNNGG	3 cut(s)	27, 170, 191
BssHII	GCGCGC	1 cut(s)	208
BssMI	GATC	1 cut(s)	289
BssNI	GRCGYC	1 cut(s)	175
BssT1I	CCWWGG	3 cut(s)	27, 170, 191
Bst4CI	ACNGT	1 cut(s)	46
BstACI	GRCGYC	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	191
BstENI	CCTNNNNNAGG	1 cut(s)	240
BstFNI	CGCG	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	3 cut(s)	177, 210, 212
BstKTI	GATC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	289
BstUI	CGCG	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	3 cut(s)	5, 20, 246
BtgI	CCRYGG	1 cut(s)	191
Cac8I	GCNNGC	1 cut(s)	210
CfoI	GCGC	3 cut(s)	177, 210, 212
Cfr13I	GGNCC	1 cut(s)	31
CviAII	CATG	4 cut(s)	10, 151, 192, 266
CviJI	RGCY	6 cut(s)	5, 20, 62, 67, 73, 246
CviKI_1	RGCY	6 cut(s)	5, 20, 62, 67, 73, 246
DinI	GGCGCC	1 cut(s)	176
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	3 cut(s)	27, 170, 191
Eco47I	GGWCC	1 cut(s)	31
EcoNI	CCTNNNNNAGG	1 cut(s)	240
EcoO109I	RGGNCCY	1 cut(s)	31
EcoT14I	CCWWGG	3 cut(s)	27, 170, 191
EgeI	GGCGCC	1 cut(s)	176
EheI	GGCGCC	1 cut(s)	176
ErhI	CCWWGG	3 cut(s)	27, 170, 191
FaeI	CATG	4 cut(s)	13, 154, 195, 269
FaiI	YATR	5 cut(s)	11, 59, 152, 193, 267
FaqI	GGGAC	2 cut(s)	17, 168
FatI	CATG	4 cut(s)	9, 150, 191, 265
Fnu4HI	GCNGC	3 cut(s)	155, 178, 271
Fsp4HI	GCNGC	3 cut(s)	155, 178, 271
FspBI	CTAG	2 cut(s)	242, 352
GlaI	GCGC	3 cut(s)	176, 209, 211
GluI	GCNGC	3 cut(s)	155, 178, 271
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	3 cut(s)	5, 20, 246
HhaI	GCGC	3 cut(s)	177, 210, 212
Hin1I	GRCGYC	1 cut(s)	175
Hin1II	CATG	4 cut(s)	13, 154, 195, 269
Hin6I	GCGC	3 cut(s)	175, 208, 210
HinP1I	GCGC	3 cut(s)	175, 208, 210
HinfI	GANTC	1 cut(s)	87
Hpy188I	TCNGA	2 cut(s)	86, 294
Hpy188III	TCNNGA	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	198, 267
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4V	TGCA	1 cut(s)	251
Hsp92I	GRCGYC	1 cut(s)	175
Hsp92II	CATG	4 cut(s)	13, 154, 195, 269
HspAI	GCGC	3 cut(s)	175, 208, 210
KasI	GGCGCC	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	1 cut(s)	78
MaeI	CTAG	2 cut(s)	242, 352
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	2 cut(s)	224, 299
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	336
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	175
MnlI	CCTC	9 cut(s)	31, 34, 90, 131, 175, 196, 237, 273, 314
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	5
MvnI	CGCG	1 cut(s)	210
NarI	GGCGCC	1 cut(s)	175
NcoI	CCATGG	1 cut(s)	191
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	4 cut(s)	13, 154, 195, 269
NlaIV	GGNNCC	2 cut(s)	33, 176
PauI	GCGCGC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	87
PkrI	GCNGC	3 cut(s)	156, 179, 272
PluTI	GGCGCC	1 cut(s)	178
PpuMI	RGGWCCY	1 cut(s)	31
Psp5II	RGGWCCY	1 cut(s)	31
PspN4I	GGNNCC	2 cut(s)	33, 176
PspPI	GGNCC	1 cut(s)	31
PspPPI	RGGWCCY	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	289
PteI	GCGCGC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	14
SatI	GCNGC	3 cut(s)	155, 178, 271
Sau3AI	GATC	1 cut(s)	289
Sau96I	GGNCC	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	4 cut(s)	33, 75, 123, 229
SfoI	GGCGCC	1 cut(s)	176
SinI	GGWCC	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	14
SsiI	CCGC	4 cut(s)	155, 178, 270, 303
SspDI	GGCGCC	1 cut(s)	174
SspMI	CTAG	2 cut(s)	242, 352
StyI	CCWWGG	3 cut(s)	27, 170, 191
TaaI	ACNGT	1 cut(s)	46
TaqI	TCGA	2 cut(s)	217, 223
TauI	GCSGC	3 cut(s)	157, 180, 273
TfiI	GAWTC	1 cut(s)	87
TspGWI	ACGGA	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	31
XagI	CCTNNNNNAGG	1 cut(s)	240
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XspI	CTAG	2 cut(s)	242, 352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.