Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007596

Physical Location & Seq

Genomic Coordinates Forward (+)

30844085 .. 30844378

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00408390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGCCAACATGATAATGGCCTCCTCGCCGCGTCCAAATCTCCATCCCCAAGCTCACCAAAACCCACCTCCTCCAATCCCTCAAATCCCTCTCCTTAATCGCTACCACCTCCCTCTCCGTCGCCCGGTCGTCCCTTGCCGCTTCGACCGAGAAGGTGGCGCTCTACGGCTTCGACCTGACCCTGCGGATCCAGGCCATCCAGTTCCTGCTCCTCATGGTGGCCCTCGACAAGATCTACTACTCGCCGCTCGGCAAGTTCATGGGCGTTTGGTCTTTTTTCTTCTTCAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

10.86

Weight (kDa)

11.58

Isoelectric Point (pI)

64.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32260
fragaria_vesca	FvH4_5g30810 FvH4_5g32992 FvH4_7g16720
malus_domestica	MD15G1126100.v1.1
prunus_persica	Prupe.1G482000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429151 RchiOBHm_Chr5g0054961 RchiOBHm_Chr6g0297791
rosa_laevigata	RLG00000026863
rosa_multiflora	Rmu_sc0002438.1_g000015 Rmu_sc0002674.1_g000016 Rmu_sc0003108.1_g000005 Rmu_sc0003162.1_g000005 Rmu_sc0021574.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034140 Rroxscaffold_5G00364670 Rroxscaffold_6G00408390
rosa_samantha	Rh4CG310800 Rh4DG437300 Rh5DG384100 Rh6AG386100 Rh6BG394700 Rh6CG400400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	248
AccII	CGCG	1 cut(s)	31
AciI	CCGC	4 cut(s)	29, 139, 185, 246
AclWI	GGATC	2 cut(s)	182, 195
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	269
AfiI	CCNNNNNNNGG	2 cut(s)	124, 218
AjnI	CCWGG	1 cut(s)	190
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
AlwI	GGATC	2 cut(s)	182, 195
AlwNI	CAGNNNCTG	1 cut(s)	206
AoxI	GGCC	4 cut(s)	3, 18, 193, 220
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	221
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	47
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	187
BccI	CCATC	2 cut(s)	51, 204
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	192
BcnI	CCSGG	1 cut(s)	125
BfoI	RGCGCY	1 cut(s)	162
BglII	AGATCT	1 cut(s)	232
BisI	GCNGC	3 cut(s)	29, 139, 246
BlsI	GCNGC	3 cut(s)	30, 140, 247
Bme1390I	CCNGG	2 cut(s)	125, 192
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	2 cut(s)	125, 192
BpuMI	CCSGG	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 218
Bse1I	ACTGG	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	192
BseGI	GGATG	2 cut(s)	43, 196
BseLI	CCNNNNNNNGG	2 cut(s)	124, 218
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	3 cut(s)	13, 60, 201
Bsh1236I	CGCG	1 cut(s)	31
Bsh1285I	CGRYCG	2 cut(s)	129, 148
BshFI	GGCC	4 cut(s)	5, 20, 195, 222
BsiEI	CGRYCG	2 cut(s)	129, 148
BsiSI	CCGG	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	2 cut(s)	124, 218
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	4 cut(s)	5, 20, 195, 222
Bsp143I	GATC	2 cut(s)	187, 232
BspACI	CCGC	4 cut(s)	29, 139, 185, 246
BspANI	GGCC	4 cut(s)	5, 20, 195, 222
BspFNI	CGCG	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	189
BspPI	GGATC	2 cut(s)	182, 195
BsrBI	CCGCTC	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	200
BssMI	GATC	2 cut(s)	187, 232
Bst2UI	CCWGG	1 cut(s)	192
BstF5I	GGATG	2 cut(s)	43, 196
BstFNI	CGCG	1 cut(s)	31
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	2 cut(s)	190, 235
BstMBI	GATC	2 cut(s)	187, 232
BstMCI	CGRYCG	2 cut(s)	129, 148
BstNI	CCWGG	1 cut(s)	192
BstSCI	CCNGG	2 cut(s)	123, 190
BstUI	CGCG	1 cut(s)	31
BstX2I	RGATCY	2 cut(s)	187, 232
BstYI	RGATCY	2 cut(s)	187, 232
BsuRI	GGCC	4 cut(s)	5, 20, 195, 222
BtsCI	GGATG	2 cut(s)	43, 196
CaiI	CAGNNNCTG	1 cut(s)	206
CfoI	GCGC	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	221
CseI	GACGC	1 cut(s)	20
CviAII	CATG	3 cut(s)	10, 215, 260
CviJI	RGCY	6 cut(s)	5, 20, 53, 169, 195, 222
CviKI_1	RGCY	6 cut(s)	5, 20, 53, 169, 195, 222
DpnI	GATC	2 cut(s)	189, 234
DpnII	GATC	2 cut(s)	187, 232
EaeI	YGGCCR	1 cut(s)	3
Eco57I	CTGAAG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	190
FaeI	CATG	3 cut(s)	13, 218, 263
FaiI	YATR	3 cut(s)	11, 216, 261
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	3 cut(s)	9, 214, 259
Fnu4HI	GCNGC	3 cut(s)	29, 139, 246
FokI	GGATG	2 cut(s)	30, 183
Fsp4HI	GCNGC	3 cut(s)	29, 139, 246
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	3 cut(s)	29, 139, 246
HaeII	RGCGCY	1 cut(s)	162
HaeIII	GGCC	4 cut(s)	5, 20, 195, 222
HapII	CCGG	1 cut(s)	125
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	3 cut(s)	13, 218, 263
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	1 cut(s)	47
Hpy99I	CGWCG	1 cut(s)	123
HpyAV	CCTTC	1 cut(s)	146
Hsp92II	CATG	3 cut(s)	13, 218, 263
HspAI	GCGC	1 cut(s)	159
Kzo9I	GATC	2 cut(s)	187, 232
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	7 cut(s)	138, 177, 189, 195, 204, 213, 219
MalI	GATC	2 cut(s)	189, 234
MbiI	CCGCTC	1 cut(s)	248
MboI	GATC	2 cut(s)	187, 232
MboII	GAAGA	2 cut(s)	272, 275
MflI	RGATCY	2 cut(s)	187, 232
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	2 cut(s)	125, 192
MvaI	CCWGG	1 cut(s)	192
MvnI	CGCG	1 cut(s)	31
NciI	CCSGG	1 cut(s)	125
NdeII	GATC	2 cut(s)	187, 232
NlaIII	CATG	3 cut(s)	13, 218, 263
NlaIV	GGNNCC	1 cut(s)	189
NmeAIII	GCCGAG	1 cut(s)	229
PkrI	GCNGC	3 cut(s)	30, 140, 247
Psp6I	CCWGG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	221
PstNI	CAGNNNCTG	1 cut(s)	206
PsuI	RGATCY	2 cut(s)	187, 232
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	3 cut(s)	29, 139, 246
Sau3AI	GATC	2 cut(s)	187, 232
Sau96I	GGNCC	1 cut(s)	221
ScrFI	CCNGG	2 cut(s)	125, 192
SetI	ASST	5 cut(s)	55, 70, 111, 157, 178
SmiMI	CAYNNNNRTG	1 cut(s)	14
SsiI	CCGC	4 cut(s)	29, 139, 185, 246
StyD4I	CCNGG	2 cut(s)	123, 190
TaqI	TCGA	3 cut(s)	144, 172, 226
TaqII	GACCGA	1 cut(s)	162
TauI	GCSGC	3 cut(s)	31, 141, 248
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TspDTI	ATGAA	1 cut(s)	248
TspGWI	ACGGA	1 cut(s)	107
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.