AT4G33355

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
16066987 .. 16067820
834 bp
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UTR
Exon/CDS
Intron
AT4G33355.2

Sequence Viewer

Length: 360 bp
ATGAGGAACATTACTACTACAACCCGAAAAATGTTACTACTTGTGATTACGATTTTATTGGGGATTGCGTATCATGGAGAAGCCATAGCATGTCCGCAGGTAAACATGTACTTAGCACAATGTTTGCCTTATCTAAAAGCTGGAGGAAATCCGTCTCCAATGTGCTGCAACGGACTTAATAGTCTAAAAGCCGCAGCGCCTGAGAAAGCCGATAGACAAGTAGCTTGTAATTGCTTGAAGAGTGTAGCTAATACAATCCCTGGAATTAATGATGATTTTGCCAAACAACTCCCTGCTAAATGTGGTGTTAATATAGGAGTCCCTTTCTCTAAGACTGTGGACTGTAACAGCATAAACTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

119

Amino Acids

12.64

Weight (kDa)

8.85

Isoelectric Point (pI)

45.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 27 - 105 3.7e-07 Probable lipid transfer
Tryp_alpha_amyl PF00234 31 - 107 1.6e-13 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 180
Acc36I ACCTGC 1 cut(s) 88
AciI CCGC 2 cut(s) 95, 192
AfaI GTAC 1 cut(s) 110
AflIII ACRYGT 1 cut(s) 105
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 1 cut(s) 259
AluBI AGCT 3 cut(s) 140, 224, 248
AluI AGCT 3 cut(s) 140, 224, 248
Alw26I GTCTC 1 cut(s) 159
AlwNI CAGNNNCTG 1 cut(s) 200
ApeKI GCWGC 2 cut(s) 165, 194
AseI ATTAAT 1 cut(s) 267
AspLEI GCGC 1 cut(s) 199
BbvI GCAGC 2 cut(s) 152, 206
BciT130I CCWGG 1 cut(s) 261
BcoDI GTCTC 1 cut(s) 159
BfoI RGCGCY 1 cut(s) 200
BfuAI ACCTGC 1 cut(s) 88
BisI GCNGC 3 cut(s) 166, 192, 195
BlsI GCNGC 3 cut(s) 167, 193, 196
Bme1390I CCNGG 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 261
BpmI CTGGAG 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 192
BseXI GCAGC 2 cut(s) 152, 206
BslFI GGGAC 1 cut(s) 305
BsmAI GTCTC 1 cut(s) 159
BsmBI CGTCTC 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 305
BspACI CCGC 2 cut(s) 95, 192
BspCNI CTCAG 1 cut(s) 193
BspMI ACCTGC 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 337, 344
Bst6I CTCTTC 1 cut(s) 233
BstDEI CTNAG 3 cut(s) 112, 201, 330
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 159
BstNI CCWGG 1 cut(s) 261
BstNSI RCATGY 2 cut(s) 93, 109
BstSCI CCNGG 1 cut(s) 259
BstV1I GCAGC 2 cut(s) 152, 206
BveI ACCTGC 1 cut(s) 88
CaiI CAGNNNCTG 1 cut(s) 200
CfoI GCGC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 109
CviAII CATG 3 cut(s) 74, 90, 106
CviJI RGCY 6 cut(s) 83, 140, 191, 209, 224, 248
CviKI_1 RGCY 6 cut(s) 83, 140, 191, 209, 224, 248
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 3 cut(s) 112, 201, 330
DrdI GACNNNNNNGTC 1 cut(s) 180
DseDI GACNNNNNNGTC 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 259
Esp3I CGTCTC 1 cut(s) 159
FaeI CATG 3 cut(s) 77, 93, 109
FaiI YATR 6 cut(s) 75, 86, 91, 107, 314, 353
FaqI GGGAC 1 cut(s) 305
FatI CATG 3 cut(s) 73, 89, 105
Fnu4HI GCNGC 3 cut(s) 166, 192, 195
Fsp4HI GCNGC 3 cut(s) 166, 192, 195
GlaI GCGC 1 cut(s) 198
GluI GCNGC 3 cut(s) 166, 192, 195
GsuI CTGGAG 1 cut(s) 162
HaeII RGCGCY 1 cut(s) 200
HhaI GCGC 1 cut(s) 199
Hin1II CATG 3 cut(s) 77, 93, 109
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HinfI GANTC 1 cut(s) 318
Hpy166II GTNNAC 2 cut(s) 103, 340
Hpy8I GTNNAC 2 cut(s) 103, 340
HpyCH4III ACNGT 2 cut(s) 337, 344
HpyCH4V TGCA 1 cut(s) 168
HpyF3I CTNAG 3 cut(s) 112, 201, 330
Hsp92II CATG 3 cut(s) 77, 93, 109
HspAI GCGC 1 cut(s) 197
LpnPI CCDG 6 cut(s) 83, 126, 213, 246, 273, 306
Lsp1109I GCAGC 2 cut(s) 152, 206
MaeIII GTNAC 2 cut(s) 33, 344
MboII GAAGA 1 cut(s) 250
MluCI AATT 2 cut(s) 229, 264
MlyI GAGTC 1 cut(s) 327
MnlI CCTC 1 cut(s) 137
MseI TTAA 3 cut(s) 177, 267, 309
MspR9I CCNGG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 261
NlaIII CATG 3 cut(s) 77, 93, 109
NspI RCATGY 2 cut(s) 93, 109
PciI ACATGT 1 cut(s) 105
PkrI GCNGC 3 cut(s) 167, 193, 196
PleI GAGTC 1 cut(s) 326
PpsI GAGTC 1 cut(s) 326
PscI ACATGT 1 cut(s) 105
PshBI ATTAAT 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PstNI CAGNNNCTG 1 cut(s) 200
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SaqAI TTAA 3 cut(s) 177, 267, 309
SatI GCNGC 3 cut(s) 166, 192, 195
SchI GAGTC 1 cut(s) 327
ScrFI CCNGG 1 cut(s) 261
SetI ASST 4 cut(s) 102, 142, 226, 250
Sse9I AATT 2 cut(s) 229, 264
SsiI CCGC 2 cut(s) 95, 192
StyD4I CCNGG 1 cut(s) 259
TaaI ACNGT 2 cut(s) 337, 344
TasI AATT 2 cut(s) 229, 264
TatI WGTACW 1 cut(s) 108
TauI GCSGC 1 cut(s) 194
Tru1I TTAA 3 cut(s) 177, 267, 309
Tru9I TTAA 3 cut(s) 177, 267, 309
TseI GCWGC 2 cut(s) 165, 194
TspGWI ACGGA 2 cut(s) 141, 186
VspI ATTAAT 1 cut(s) 267
XceI RCATGY 2 cut(s) 93, 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.