Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001353

Physical Location & Seq

Genomic Coordinates Forward (+)

3463792 .. 3466074

Gene Structure 2283 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0044500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGCAAGTATCCTATGCTGGATACTGGACACAAGGAAATGCTGGTTTTGAAGCAACTGCCATGAAGAGCTTCATTTCCCTATTGGAGACTGTAAGAAGAGCCCAACCGCATGTTGGAACTCAGTTGAAAGAGGATGCAGCACAGTTAGCTGTACAATGGAAAAAGAAACTGACTGATGCTGAAAATCCCCTAGATATCTTGGGTTTCTTGTTGTTTATAGCTACATATGGGTTAGTTTCTACGTTCAAGACAGATGAGCTTGCAAAGCTTTTTGGGCTGATTTCTCGGCATACACATGCTTTAGAACTATGTCAGACAATTGGTTATGCACAGAAATTCCCTGATTATATTCTGGATCTTGTTCAAAGCAAACAACTAGTTGAGGCTGTCAGATTAATTTGCACCTCCAAATTAACCGACAAATTCCCCCCAGCACCACTGTTACGTGAATATGTGGAGGATTCATTGAATCGTTGCAGTAAAATTTGCACGACAAAGATATCACTTGATGAAAAGGATAAGGTTGTAGACGGCCTAATAGCTGATCTAAGATCTGTGATCCAATGCATCAACAAATACAATCTCGAGTCTGAATACCAATCCGCACATGTTGAAATACAAATAGATGAGCTGAAAAAACTAAAGGAGAATTGGAGACTGTCGGCACAATCTCTTGCCTCCCAGGTTGAACCACAAAAGAGTAAAGGGAAGAAGCGTAGTTGTCCTAGCACTCCTACATCCATGTTTCAACCACAACAGCAGCTTGGACATAATGGTCAGCTGACAGCCATATCAGCTGCTAGACCGCCATCCTATCCATTGCCTACTTGTATCCCAAGCTATCCACAGTCACATTCGTCATCTGTGCTGAAAACAAATTTTGGGATTCCCGGGCAGTTTACTATGCCTGCCAAGAGCCACCCAATTGCTGTCAATATTGGAGGGCCGTTCATGCCAACTATGAAGCGCCCGTGTATGATGCATACCAGATACCCAGCCTCAGCCCCAGCTCCTGCTCCGGCTCCAGCTCCGGCCCCGGCTCCAACCCCAGTGCCAATGCACACTGCTAATTTCCGTGTACCATGCAAGTTTCCTCACCCTAATATGATGCAGTTTCGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006649 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010556 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0019222 GO:0030054 GO:0030154 GO:0030312 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0042221 GO:0042335 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0060255 GO:0061024 GO:0065007 GO:0071702 GO:0071840 GO:0071944 GO:0090627 GO:0097708 GO:0098791 GO:1901700 GO:1901957

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

374

Amino Acids

41.49

Weight (kDa)

9.27

Isoelectric Point (pI)

51.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Frigida	PF07899	20 - 218	2.1e-48	Frigida-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33355 AT4G33355
fragaria_vesca	FvH4_6g09970 FvH4_6g09980
malus_domestica	MD04G1173600.v1.1 MD04G1173800.v1.1 MD12G1187100.v1.1 MD12G1187200.v1.1 MD12G1187500.v1.1
prunus_persica	Prupe.6G292600_v2.0.a1 Prupe.6G292600_v2.0.a1 Prupe.6G292600_v2.0.a1 Prupe.6G292800_v2.0.a1
pyrus_communis	pycom04g15340 pycom12g17540 pycom12g17550
rosa_chinensis	RchiOBHm_Chr3g0460591 RchiOBHm_Chr3g0460641 RchiOBHm_Chr3g0460651 RchiOBHm_Chr7g0211001
rosa_laevigata	RLG00000003030 RLG00000024990 RLG00000024991
rosa_multiflora	Rmu_co8436807.1_g000001 Rmu_sc0001256.1_g000005 Rmu_sc0001256.1_g000008 Rmu_sc0001256.1_g000009 Rmu_sc0003701.1_g000008 Rmu_sc0011069.1_g000012
rosa_roxburghii	Rroxscaffold_3G00248180 Rroxscaffold_6G00419330 Rroxscaffold_6G00419340
rosa_rugosa	Rorug03G0044200 Rorug03G0044300 Rorug03G0044400 Rorug03G0044500 Rorug07G0123800
rosa_samantha	Rh3AG102300 Rh3AG102400 Rh3BG105900 Rh3BG106000 Rh3BG106100 Rh3CG107900 Rh3CG108000 Rh3DG107400 Rh3DG107600 Rh7AG255400 Rh7BG249900 Rh7CG272000
rosa_wichuraiana	Rw0G010020 Rw3G008690 Rw3G008710 Rw7G021850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	774
AccI	GTMKAC	1 cut(s)	528
AciI	CCGC	3 cut(s)	107, 603, 806
AclWI	GGATC	2 cut(s)	363, 553
AcsI	RAATTY	4 cut(s)	335, 422, 483, 877
AfaI	GTAC	2 cut(s)	153, 1080
AfiI	CCNNNNNNNGG	1 cut(s)	113
AflIII	ACRYGT	1 cut(s)	607
AgsI	TTSAA	8 cut(s)	50, 127, 247, 365, 469, 614, 689, 749
AhlI	ACTAGT	1 cut(s)	376
AjnI	CCWGG	1 cut(s)	681
Alw26I	GTCTC	2 cut(s)	80, 649
AlwI	GGATC	2 cut(s)	363, 553
AlwNI	CAGNNNCTG	1 cut(s)	1013
Ama87I	CYCGRG	2 cut(s)	584, 890
AoxI	GGCC	3 cut(s)	532, 944, 1032
ApeKI	GCWGC	3 cut(s)	137, 760, 797
ApoI	RAATTY	4 cut(s)	335, 422, 483, 877
AseI	ATTAAT	1 cut(s)	395
Asp700I	GAANNNNTTC	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	969
AspS9I	GGNCC	2 cut(s)	944, 1033
AsuC2I	CCSGG	3 cut(s)	891, 892, 1037
AsuHPI	GGTGA	1 cut(s)	1088
AvaI	CYCGRG	2 cut(s)	584, 890
BanII	GRGCYC	1 cut(s)	103
BbvCI	CCTCAGC	1 cut(s)	1000
BbvI	GCAGC	3 cut(s)	149, 772, 784
BccI	CCATC	1 cut(s)	817
BceAI	ACGGC	2 cut(s)	547, 931
BciT130I	CCWGG	1 cut(s)	683
BciVI	GTATCC	3 cut(s)	14, 19, 842
BcnI	CCSGG	3 cut(s)	891, 892, 1037
BcoDI	GTCTC	2 cut(s)	80, 649
BcuI	ACTAGT	1 cut(s)	376
BfaI	CTAG	4 cut(s)	191, 377, 726, 801
BfoI	RGCGCY	1 cut(s)	970
BfuI	GTATCC	3 cut(s)	14, 19, 842
BglII	AGATCT	1 cut(s)	551
BisI	GCNGC	3 cut(s)	138, 761, 798
BlsI	GCNGC	3 cut(s)	139, 762, 799
Bme1390I	CCNGG	4 cut(s)	683, 891, 892, 1037
BmeT110I	CYCGRG	2 cut(s)	584, 890
BmgT120I	GGNCC	2 cut(s)	944, 1033
BmiI	GGNNCC	3 cut(s)	1023, 1035, 1041
BmrFI	CCNGG	4 cut(s)	683, 891, 892, 1037
BmrI	ACTGGG	1 cut(s)	1043
BmsI	GCATC	5 cut(s)	124, 166, 576, 969, 1098
BmuI	ACTGGG	1 cut(s)	1043
BpmI	CTGGAG	1 cut(s)	1008
Bpu10I	CCTNAGC	1 cut(s)	1000
BpuMI	CCSGG	3 cut(s)	891, 892, 1037
BsaAI	YACGTR	1 cut(s)	446
BsaJI	CCNNGG	3 cut(s)	681, 890, 1035
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse1I	ACTGG	2 cut(s)	29, 1049
Bse3DI	GCAATG	1 cut(s)	818
BseBI	CCWGG	1 cut(s)	683
BseDI	CCNNGG	3 cut(s)	681, 890, 1035
BseGI	GGATG	3 cut(s)	139, 737, 809
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMI	GCAATG	1 cut(s)	818
BseMII	CTCAG	2 cut(s)	134, 1014
BseNI	ACTGG	2 cut(s)	29, 1049
BseXI	GCAGC	3 cut(s)	149, 772, 784
BseYI	CCCAGC	3 cut(s)	430, 994, 1006
BshFI	GGCC	3 cut(s)	534, 946, 1034
BsiHKCI	CYCGRG	2 cut(s)	584, 890
BsiSI	CCGG	4 cut(s)	891, 1019, 1031, 1037
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	2 cut(s)	80, 649
BsnI	GGCC	3 cut(s)	534, 946, 1034
BsoBI	CYCGRG	2 cut(s)	584, 890
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp1407I	TGTACA	1 cut(s)	151
Bsp143I	GATC	4 cut(s)	355, 544, 551, 558
BspACI	CCGC	3 cut(s)	107, 603, 806
BspANI	GGCC	3 cut(s)	534, 946, 1034
BspCNI	CTCAG	2 cut(s)	133, 1013
BspLI	GGNNCC	3 cut(s)	1023, 1035, 1041
BspPI	GGATC	2 cut(s)	363, 553
BspQI	GCTCTTC	2 cut(s)	59, 91
BsrDI	GCAATG	1 cut(s)	818
BsrGI	TGTACA	1 cut(s)	151
BsrI	ACTGG	2 cut(s)	29, 1049
BssECI	CCNNGG	3 cut(s)	681, 890, 1035
BssMI	GATC	4 cut(s)	355, 544, 551, 558
Bst2UI	CCWGG	1 cut(s)	683
Bst4CI	ACNGT	5 cut(s)	91, 144, 441, 660, 849
Bst6I	CTCTTC	2 cut(s)	59, 91
BstAUI	TGTACA	1 cut(s)	151
BstBAI	YACGTR	1 cut(s)	446
BstC8I	GCNNGC	2 cut(s)	261, 909
BstDEI	CTNAG	3 cut(s)	120, 548, 1000
BstF5I	GGATG	3 cut(s)	139, 737, 809
BstH2I	RGCGCY	1 cut(s)	970
BstHHI	GCGC	1 cut(s)	969
BstKTI	GATC	4 cut(s)	358, 547, 554, 561
BstMAI	GTCTC	2 cut(s)	80, 649
BstMBI	GATC	4 cut(s)	355, 544, 551, 558
BstMWI	GCNNNNNNNGC	5 cut(s)	146, 265, 274, 794, 952
BstNI	CCWGG	1 cut(s)	683
BstNSI	RCATGY	3 cut(s)	113, 299, 611
BstSCI	CCNGG	4 cut(s)	681, 889, 890, 1035
BstV1I	GCAGC	3 cut(s)	149, 772, 784
BstX2I	RGATCY	2 cut(s)	355, 551
BstYI	RGATCY	2 cut(s)	355, 551
BsuI	GTATCC	3 cut(s)	14, 19, 842
BsuRI	GGCC	3 cut(s)	534, 946, 1034
BtsCI	GGATG	3 cut(s)	139, 737, 809
BtsI	GCAGTG	1 cut(s)	1062
BtsIMutI	CAGTG	3 cut(s)	437, 1056, 1062
Cac8I	GCNNGC	2 cut(s)	261, 909
CaiI	CAGNNNCTG	1 cut(s)	1013
CfoI	GCGC	1 cut(s)	969
Cfr13I	GGNCC	2 cut(s)	944, 1033
Cfr9I	CCCGGG	1 cut(s)	890
Csp6I	GTAC	2 cut(s)	152, 1079
CviAII	CATG	7 cut(s)	61, 110, 296, 608, 742, 952, 1083
CviQI	GTAC	2 cut(s)	152, 1079
DdeI	CTNAG	3 cut(s)	120, 548, 1000
DpnI	GATC	4 cut(s)	357, 546, 553, 560
DpnII	GATC	4 cut(s)	355, 544, 551, 558
DrdI	GACNNNNNNGTC	1 cut(s)	774
DseDI	GACNNNNNNGTC	1 cut(s)	774
Eam1104I	CTCTTC	2 cut(s)	59, 91
EarI	CTCTTC	2 cut(s)	59, 91
Eco24I	GRGCYC	1 cut(s)	103
Eco32I	GATATC	2 cut(s)	196, 501
Eco88I	CYCGRG	2 cut(s)	584, 890
EcoRII	CCWGG	1 cut(s)	681
EcoRV	GATATC	2 cut(s)	196, 501
EcoT22I	ATGCAT	2 cut(s)	569, 984
EcoT38I	GRGCYC	1 cut(s)	103
FaeI	CATG	7 cut(s)	64, 113, 299, 611, 745, 955, 1086
FatI	CATG	7 cut(s)	60, 109, 295, 607, 741, 951, 1082
FauNDI	CATATG	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	528
Fnu4HI	GCNGC	3 cut(s)	138, 761, 798
FokI	GGATG	3 cut(s)	146, 724, 796
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	3 cut(s)	138, 761, 798
FspBI	CTAG	4 cut(s)	191, 377, 726, 801
GlaI	GCGC	1 cut(s)	968
GluI	GCNGC	3 cut(s)	138, 761, 798
GsaI	CCCAGC	3 cut(s)	434, 998, 1010
GsuI	CTGGAG	1 cut(s)	1008
HaeII	RGCGCY	1 cut(s)	970
HaeIII	GGCC	3 cut(s)	534, 946, 1034
HapII	CCGG	4 cut(s)	891, 1019, 1031, 1037
HhaI	GCGC	1 cut(s)	969
Hin1II	CATG	7 cut(s)	64, 113, 299, 611, 745, 955, 1086
Hin6I	GCGC	1 cut(s)	967
HinP1I	GCGC	1 cut(s)	967
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	4 cut(s)	461, 469, 587, 886
HpaII	CCGG	4 cut(s)	891, 1019, 1031, 1037
HphI	GGTGA	1 cut(s)	1088
Hpy166II	GTNNAC	3 cut(s)	529, 900, 1079
Hpy188I	TCNGA	4 cut(s)	315, 392, 592, 1119
Hpy188III	TCNNGA	3 cut(s)	247, 353, 584
Hpy8I	GTNNAC	3 cut(s)	529, 900, 1079
HpyCH4III	ACNGT	5 cut(s)	91, 144, 441, 660, 849
HpyCH4IV	ACGT	2 cut(s)	242, 445
HpyF10VI	GCNNNNNNNGC	5 cut(s)	146, 265, 274, 794, 952
HpyF3I	CTNAG	3 cut(s)	120, 548, 1000
HpySE526I	ACGT	2 cut(s)	242, 445
Hsp92II	CATG	7 cut(s)	64, 113, 299, 611, 745, 955, 1086
HspAI	GCGC	1 cut(s)	967
Kzo9I	GATC	4 cut(s)	355, 544, 551, 558
LguI	GCTCTTC	2 cut(s)	59, 91
LmnI	GCTCC	5 cut(s)	1015, 1021, 1027, 1033, 1045
Lsp1109I	GCAGC	3 cut(s)	149, 772, 784
LweI	GCATC	5 cut(s)	124, 166, 576, 969, 1098
MaeI	CTAG	4 cut(s)	191, 377, 726, 801
MaeII	ACGT	2 cut(s)	242, 445
MaeIII	GTNAC	2 cut(s)	441, 849
MalI	GATC	4 cut(s)	357, 546, 553, 560
MboI	GATC	4 cut(s)	355, 544, 551, 558
MboII	GAAGA	3 cut(s)	76, 108, 721
MfeI	CAATTG	2 cut(s)	318, 924
MflI	RGATCY	2 cut(s)	355, 551
MhlI	GDGCHC	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	596
MmeI	TCCRAC	2 cut(s)	94, 1067
MnlI	CCTC	8 cut(s)	124, 376, 415, 451, 688, 935, 1009, 1104
Mph1103I	ATGCAT	2 cut(s)	569, 984
MroXI	GAANNNNTTC	1 cut(s)	68
MseI	TTAA	2 cut(s)	395, 413
MslI	CAYNNNNRTG	1 cut(s)	294
MspA1I	CMGCKG	2 cut(s)	781, 797
MspI	CCGG	4 cut(s)	891, 1019, 1031, 1037
MspR9I	CCNGG	4 cut(s)	683, 891, 892, 1037
MunI	CAATTG	2 cut(s)	318, 924
MvaI	CCWGG	1 cut(s)	683
MwoI	GCNNNNNNNGC	5 cut(s)	146, 265, 274, 794, 952
NciI	CCSGG	3 cut(s)	891, 892, 1037
NdeI	CATATG	1 cut(s)	226
NdeII	GATC	4 cut(s)	355, 544, 551, 558
NlaIII	CATG	7 cut(s)	64, 113, 299, 611, 745, 955, 1086
NlaIV	GGNNCC	3 cut(s)	1023, 1035, 1041
NmeAIII	GCCGAG	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	849
NsiI	ATGCAT	2 cut(s)	569, 984
NspI	RCATGY	3 cut(s)	113, 299, 611
PaeR7I	CTCGAG	1 cut(s)	584
PciI	ACATGT	1 cut(s)	607
PciSI	GCTCTTC	2 cut(s)	59, 91
PdmI	GAANNNNTTC	1 cut(s)	68
PfeI	GAWTC	3 cut(s)	461, 469, 886
PkrI	GCNGC	3 cut(s)	139, 762, 799
PleI	GAGTC	1 cut(s)	595
PpsI	GAGTC	1 cut(s)	595
Ppu21I	YACGTR	1 cut(s)	446
PscI	ACATGT	1 cut(s)	607
PshBI	ATTAAT	1 cut(s)	395
Psp6I	CCWGG	1 cut(s)	681
PspFI	CCCAGC	3 cut(s)	430, 994, 1006
PspGI	CCWGG	1 cut(s)	681
PspN4I	GGNNCC	3 cut(s)	1023, 1035, 1041
PspPI	GGNCC	2 cut(s)	944, 1033
PstNI	CAGNNNCTG	1 cut(s)	1013
PsuI	RGATCY	2 cut(s)	355, 551
PvuII	CAGCTG	2 cut(s)	781, 797
RsaI	GTAC	2 cut(s)	153, 1080
RsaNI	GTAC	2 cut(s)	152, 1079
RseI	CAYNNNNRTG	1 cut(s)	294
SapI	GCTCTTC	2 cut(s)	59, 91
SaqAI	TTAA	2 cut(s)	395, 413
SatI	GCNGC	3 cut(s)	138, 761, 798
Sau3AI	GATC	4 cut(s)	355, 544, 551, 558
Sau96I	GGNCC	2 cut(s)	944, 1033
SchI	GAGTC	1 cut(s)	596
ScrFI	CCNGG	4 cut(s)	683, 891, 892, 1037
SduI	GDGCHC	1 cut(s)	103
SfaNI	GCATC	5 cut(s)	124, 166, 576, 969, 1098
Sfr274I	CTCGAG	1 cut(s)	584
SlaI	CTCGAG	1 cut(s)	584
SmaI	CCCGGG	1 cut(s)	892
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
SpeI	ACTAGT	1 cut(s)	376
SsiI	CCGC	3 cut(s)	107, 603, 806
SspI	AATATT	1 cut(s)	937
SspMI	CTAG	4 cut(s)	191, 377, 726, 801
StyD4I	CCNGG	4 cut(s)	681, 889, 890, 1035
TaaI	ACNGT	5 cut(s)	91, 144, 441, 660, 849
TaiI	ACGT	2 cut(s)	245, 448
TaqI	TCGA	1 cut(s)	585
TatI	WGTACW	1 cut(s)	151
TfiI	GAWTC	3 cut(s)	461, 469, 886
Tru1I	TTAA	2 cut(s)	395, 413
Tru9I	TTAA	2 cut(s)	395, 413
TscAI	CASTG	3 cut(s)	444, 1056, 1069
TseFI	GTSAC	1 cut(s)	849
TseI	GCWGC	3 cut(s)	137, 760, 797
Tsp45I	GTSAC	1 cut(s)	849
TspDTI	ATGAA	6 cut(s)	61, 77, 453, 525, 940, 977
TspGWI	ACGGA	1 cut(s)	1064
TspMI	CCCGGG	1 cut(s)	890
TspRI	CASTG	3 cut(s)	444, 1056, 1069
VspI	ATTAAT	1 cut(s)	395
XapI	RAATTY	4 cut(s)	335, 422, 483, 877
XceI	RCATGY	3 cut(s)	113, 299, 611
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110
XhoI	CTCGAG	1 cut(s)	584
XmaI	CCCGGG	1 cut(s)	890
XmiI	GTMKAC	1 cut(s)	528
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	4 cut(s)	191, 377, 726, 801
Zsp2I	ATGCAT	2 cut(s)	569, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.