RLG00000024990

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
41120445 .. 41120903
459 bp
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UTR
Exon/CDS
Intron
RLM00000024990

Sequence Viewer

Length: 351 bp
ATGGCATCAGCAGTGGTGAAGCTTGCTTTGGTGGCTCTCATGTGCATTGTGGTGGCTGTCCCCGTCGCCCAGGCCATCACTTGTGGCCAAGTGACCCAAAGCTTGGCATCGTGCATCAACTACGTCAGGACTGGTGGCGTTATCCCTCCCGCTTGCTGCAACGGAATCCGCAGCCTTAACAGCCAGGCCAAGACCACAGCCGACCGCAAGCAAACTTGTACTTGCCTAAAGAACGCAGCTGGATCCATTCCCGGAGTTAACCCTAACCTCGCCGCTGGTCTTCCCGGCAAATGTGGTGTCAGCGTTCCCTACAAGATCAGCACGTCCACCAACTGCAACAATGTGAAGTGA

Protein Analysis

117

Amino Acids

11.72

Weight (kDa)

9.37

Isoelectric Point (pI)

31.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 17 - 105 2.6e-06 Probable lipid transfer
Tryp_alpha_amyl PF00234 28 - 112 2.4e-14 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 103
AciI CCGC 4 cut(s) 150, 169, 205, 273
AclWI GGATC 2 cut(s) 237, 250
AcoI YGGCCR 1 cut(s) 85
AfaI GTAC 1 cut(s) 220
AfiI CCNNNNNNNGG 1 cut(s) 103
AjiI CACGTC 1 cut(s) 324
AjnI CCWGG 2 cut(s) 69, 183
AjuI GAANNNNNNNTTGG 2 cut(s) 11, 43
AluBI AGCT 3 cut(s) 22, 102, 239
AluI AGCT 3 cut(s) 22, 102, 239
AlwI GGATC 2 cut(s) 237, 250
AoxI GGCC 3 cut(s) 72, 85, 186
ApeKI GCWGC 3 cut(s) 156, 171, 236
ArsI GACNNNNNNTTYG 2 cut(s) 282, 314
AsuC2I CCSGG 2 cut(s) 252, 285
AsuHPI GGTGA 1 cut(s) 28
BalI TGGCCA 1 cut(s) 87
BamHI GGATCC 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 272
BbvI GCAGC 3 cut(s) 143, 183, 248
BccI CCATC 1 cut(s) 83
BciT130I CCWGG 2 cut(s) 71, 185
BcnI CCSGG 2 cut(s) 252, 285
BisI GCNGC 4 cut(s) 157, 172, 237, 273
BlsI GCNGC 4 cut(s) 158, 173, 238, 274
Bme1390I CCNGG 4 cut(s) 71, 185, 252, 285
BmgBI CACGTC 1 cut(s) 324
BmiI GGNNCC 1 cut(s) 244
BmrFI CCNGG 4 cut(s) 71, 185, 252, 285
BmsI GCATC 3 cut(s) 14, 116, 123
BpiI GAAGAC 1 cut(s) 272
BpuMI CCSGG 2 cut(s) 252, 285
BsaJI CCNNGG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 136
BseBI CCWGG 2 cut(s) 71, 185
BseDI CCNNGG 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 103
BseNI ACTGG 1 cut(s) 136
BseXI GCAGC 3 cut(s) 143, 183, 248
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 3 cut(s) 74, 87, 188
BsiEI CGRYCG 1 cut(s) 205
BsiSI CCGG 2 cut(s) 252, 285
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 44
BsnI GGCC 3 cut(s) 74, 87, 188
Bsp143I GATC 2 cut(s) 242, 315
BspACI CCGC 4 cut(s) 150, 169, 205, 273
BspANI GGCC 3 cut(s) 74, 87, 188
BspLI GGNNCC 1 cut(s) 244
BspPI GGATC 2 cut(s) 237, 250
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 2 cut(s) 242, 315
Bst2UI CCWGG 2 cut(s) 71, 185
BstC8I GCNNGC 3 cut(s) 24, 154, 209
BstKTI GATC 2 cut(s) 245, 318
BstMBI GATC 2 cut(s) 242, 315
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 2 cut(s) 32, 180
BstNI CCWGG 2 cut(s) 71, 185
BstSCI CCNGG 4 cut(s) 69, 183, 250, 283
BstV1I GCAGC 3 cut(s) 143, 183, 248
BstV2I GAAGAC 1 cut(s) 272
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BsuRI GGCC 3 cut(s) 74, 87, 188
BtrI CACGTC 1 cut(s) 324
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 3 cut(s) 24, 154, 209
Csp6I GTAC 1 cut(s) 219
CviAII CATG 1 cut(s) 40
CviQI GTAC 1 cut(s) 219
DpnI GATC 2 cut(s) 244, 317
DpnII GATC 2 cut(s) 242, 315
EaeI YGGCCR 1 cut(s) 85
EcoRII CCWGG 2 cut(s) 69, 183
FaeI CATG 1 cut(s) 43
FaiI YATR 1 cut(s) 41
FaqI GGGAC 1 cut(s) 44
FatI CATG 1 cut(s) 39
FauI CCCGC 1 cut(s) 157
Fnu4HI GCNGC 4 cut(s) 157, 172, 237, 273
Fsp4HI GCNGC 4 cut(s) 157, 172, 237, 273
GluI GCNGC 4 cut(s) 157, 172, 237, 273
HaeIII GGCC 3 cut(s) 74, 87, 188
HapII CCGG 2 cut(s) 252, 285
Hin1II CATG 1 cut(s) 43
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HindIII AAGCTT 2 cut(s) 20, 100
HinfI GANTC 1 cut(s) 165
HpaI GTTAAC 1 cut(s) 259
HpaII CCGG 2 cut(s) 252, 285
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 2 cut(s) 259, 327
Hpy188III TCNNGA 1 cut(s) 127
Hpy8I GTNNAC 2 cut(s) 259, 327
Hpy99I CGWCG 1 cut(s) 68
HpyCH4IV ACGT 2 cut(s) 123, 323
HpyCH4V TGCA 4 cut(s) 45, 114, 159, 336
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 180
HpySE526I ACGT 2 cut(s) 123, 323
Hsp92II CATG 1 cut(s) 43
KspAI GTTAAC 1 cut(s) 259
Kzo9I GATC 2 cut(s) 242, 315
Lsp1109I GCAGC 3 cut(s) 143, 183, 248
LweI GCATC 3 cut(s) 14, 116, 123
MaeII ACGT 2 cut(s) 123, 323
MaeIII GTNAC 1 cut(s) 91
MalI GATC 2 cut(s) 244, 317
MboI GATC 2 cut(s) 242, 315
MboII GAAGA 1 cut(s) 272
MflI RGATCY 1 cut(s) 242
MlsI TGGCCA 1 cut(s) 87
MluNI TGGCCA 1 cut(s) 87
MnlI CCTC 2 cut(s) 156, 278
Mox20I TGGCCA 1 cut(s) 87
MscI TGGCCA 1 cut(s) 87
MseI TTAA 2 cut(s) 177, 258
MslI CAYNNNNRTG 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 87
MspA1I CMGCKG 2 cut(s) 239, 275
MspI CCGG 2 cut(s) 252, 285
MspR9I CCNGG 4 cut(s) 71, 185, 252, 285
MvaI CCWGG 2 cut(s) 71, 185
MwoI GCNNNNNNNGC 2 cut(s) 32, 180
NciI CCSGG 2 cut(s) 252, 285
NdeII GATC 2 cut(s) 242, 315
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 91
PfeI GAWTC 1 cut(s) 165
PflMI CCANNNNNTGG 1 cut(s) 103
PfoI TCCNGGA 1 cut(s) 250
PkrI GCNGC 4 cut(s) 158, 173, 238, 274
Psp6I CCWGG 2 cut(s) 69, 183
PspGI CCWGG 2 cut(s) 69, 183
PspN4I GGNNCC 1 cut(s) 244
PsuI RGATCY 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
RseI CAYNNNNRTG 1 cut(s) 50
SaqAI TTAA 2 cut(s) 177, 258
SatI GCNGC 4 cut(s) 157, 172, 237, 273
Sau3AI GATC 2 cut(s) 242, 315
ScrFI CCNGG 4 cut(s) 71, 185, 252, 285
SetI ASST 6 cut(s) 24, 104, 126, 241, 270, 326
SfaNI GCATC 3 cut(s) 14, 116, 123
SmiMI CAYNNNNRTG 1 cut(s) 50
SsiI CCGC 4 cut(s) 150, 169, 205, 273
StyD4I CCNGG 4 cut(s) 69, 183, 250, 283
TaiI ACGT 2 cut(s) 126, 326
TatI WGTACW 1 cut(s) 218
TauI GCSGC 1 cut(s) 275
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 2 cut(s) 177, 258
Tru9I TTAA 2 cut(s) 177, 258
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 3 cut(s) 156, 171, 236
Tsp45I GTSAC 1 cut(s) 91
TspGWI ACGGA 1 cut(s) 177
TspRI CASTG 1 cut(s) 18
Van91I CCANNNNNTGG 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.