Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001353

Physical Location & Seq

Genomic Coordinates Forward (+)

26936907 .. 26937904

Gene Structure 998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G292600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCTTACTCTGCCATGACTAAGCTTGCTTTGGTGGTGGCCTTGTGCATGGTTGTGAGCGTGCCCATTGCTCAAGCCATAACATGTGGCCAAGTGTCCAGCAGCCTTGCACCATGCATACCCTACGTGAGAGGCGGTGGAGCTGTGCCTCCAGCTTGCTGCAACGGCATTAGGAACGTCAACAACTTGGCAAGGACCACCCCTGACCGCCAGGCCGCTTGCAACTGCCTGAAACAGCTTTCCGCCAGCGTCCCCGGAGTCAACCCTAACAATGCCGCAGCGCTTCCCGGCAAGTGTGGAGTTAGTATTCCTTACAAGATTAGCGCCTCCACCAACTGCGCCACGTACCTTGATATGGGACAAGTATTTTCGGCCGCAGATAATATTAGAGAGTCGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006649 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010556 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0019222 GO:0030054 GO:0030154 GO:0030312 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0042221 GO:0042335 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0060255 GO:0061024 GO:0065007 GO:0071702 GO:0071840 GO:0071944 GO:0090627 GO:0097708 GO:0098791 GO:1901700 GO:1901957

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

134

Amino Acids

13.61

Weight (kDa)

8.63

Isoelectric Point (pI)

35.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33355 AT4G33355
fragaria_vesca	FvH4_6g09970 FvH4_6g09980
malus_domestica	MD04G1173600.v1.1 MD04G1173800.v1.1 MD12G1187100.v1.1 MD12G1187200.v1.1 MD12G1187500.v1.1
prunus_persica	Prupe.6G292600_v2.0.a1 Prupe.6G292600_v2.0.a1 Prupe.6G292600_v2.0.a1 Prupe.6G292800_v2.0.a1
pyrus_communis	pycom04g15340 pycom12g17540 pycom12g17550
rosa_chinensis	RchiOBHm_Chr3g0460591 RchiOBHm_Chr3g0460641 RchiOBHm_Chr3g0460651 RchiOBHm_Chr7g0211001
rosa_laevigata	RLG00000003030 RLG00000024990 RLG00000024991
rosa_multiflora	Rmu_co8436807.1_g000001 Rmu_sc0001256.1_g000005 Rmu_sc0001256.1_g000008 Rmu_sc0001256.1_g000009 Rmu_sc0003701.1_g000008 Rmu_sc0011069.1_g000012
rosa_roxburghii	Rroxscaffold_3G00248180 Rroxscaffold_6G00419330 Rroxscaffold_6G00419340
rosa_rugosa	Rorug03G0044200 Rorug03G0044300 Rorug03G0044400 Rorug03G0044500 Rorug07G0123800
rosa_samantha	Rh3AG102300 Rh3AG102400 Rh3BG105900 Rh3BG106000 Rh3BG106100 Rh3CG107900 Rh3CG108000 Rh3DG107400 Rh3DG107600 Rh7AG255400 Rh7BG249900 Rh7CG272000
rosa_wichuraiana	Rw0G010020 Rw3G008690 Rw3G008710 Rw7G021850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	135, 208, 216, 243, 276, 375
AcoI	YGGCCR	2 cut(s)	88, 372
AfaI	GTAC	1 cut(s)	347
AfeI	AGCGCT	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	355
AflIII	ACRYGT	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	4 cut(s)	25, 143, 155, 238
AluI	AGCT	4 cut(s)	25, 143, 155, 238
Aor51HI	AGCGCT	1 cut(s)	282
AoxI	GGCC	4 cut(s)	39, 88, 213, 372
ApeKI	GCWGC	3 cut(s)	102, 159, 278
AspLEI	GCGC	3 cut(s)	283, 326, 341
AspS9I	GGNCC	1 cut(s)	195
AsuC2I	CCSGG	2 cut(s)	255, 288
AvaII	GGWCC	1 cut(s)	195
BaeGI	GKGCMC	1 cut(s)	66
BalI	TGGCCA	1 cut(s)	90
BbvI	GCAGC	3 cut(s)	114, 146, 290
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	212
BcnI	CCSGG	2 cut(s)	255, 288
BfoI	RGCGCY	2 cut(s)	284, 327
BisI	GCNGC	6 cut(s)	103, 160, 216, 276, 279, 375
BlsI	GCNGC	6 cut(s)	104, 161, 217, 277, 280, 376
Bme1390I	CCNGG	3 cut(s)	212, 255, 288
Bme18I	GGWCC	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	195
BmrFI	CCNGG	3 cut(s)	212, 255, 288
BpmI	CTGGAG	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	57
BpuMI	CCSGG	2 cut(s)	255, 288
BsaAI	YACGTR	2 cut(s)	127, 345
BsaJI	CCNNGG	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	253
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMI	GCAATG	1 cut(s)	66
BseSI	GKGCMC	1 cut(s)	66
BseX3I	CGGCCG	1 cut(s)	372
BseXI	GCAGC	3 cut(s)	114, 146, 290
Bsh1285I	CGRYCG	1 cut(s)	375
BshFI	GGCC	4 cut(s)	41, 90, 215, 374
BsiEI	CGRYCG	1 cut(s)	375
BsiSI	CCGG	2 cut(s)	255, 288
BslFI	GGGAC	2 cut(s)	236, 372
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmFI	GGGAC	2 cut(s)	236, 372
BsnI	GGCC	4 cut(s)	41, 90, 215, 374
Bsp1286I	GDGCHC	1 cut(s)	66
BspACI	CCGC	6 cut(s)	135, 208, 216, 243, 276, 375
BspANI	GGCC	4 cut(s)	41, 90, 215, 374
BsrDI	GCAATG	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	212
BstBAI	YACGTR	2 cut(s)	127, 345
BstC8I	GCNNGC	5 cut(s)	27, 62, 157, 220, 247
BstDEI	CTNAG	1 cut(s)	21
BstH2I	RGCGCY	2 cut(s)	284, 327
BstHHI	GCGC	3 cut(s)	283, 326, 341
BstMCI	CGRYCG	1 cut(s)	375
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 165
BstNI	CCWGG	1 cut(s)	212
BstNSI	RCATGY	1 cut(s)	87
BstSCI	CCNGG	3 cut(s)	210, 253, 286
BstSLI	GKGCMC	1 cut(s)	66
BstV1I	GCAGC	3 cut(s)	114, 146, 290
BstZI	CGGCCG	1 cut(s)	372
BsuRI	GGCC	4 cut(s)	41, 90, 215, 374
Cac8I	GCNNGC	5 cut(s)	27, 62, 157, 220, 247
CfoI	GCGC	3 cut(s)	283, 326, 341
Cfr13I	GGNCC	1 cut(s)	195
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	346
CspCI	CAANNNNNGTGG	2 cut(s)	331, 366
CviAII	CATG	4 cut(s)	16, 49, 84, 114
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	1 cut(s)	21
EaeI	YGGCCR	2 cut(s)	88, 372
EagI	CGGCCG	1 cut(s)	372
EciI	GGCGGA	1 cut(s)	232
EclXI	CGGCCG	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	195
Eco47III	AGCGCT	1 cut(s)	282
Eco52I	CGGCCG	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	210
EcoT22I	ATGCAT	1 cut(s)	119
FaeI	CATG	4 cut(s)	19, 52, 87, 117
FaiI	YATR	7 cut(s)	17, 50, 80, 85, 115, 119, 356
FaqI	GGGAC	2 cut(s)	236, 372
FatI	CATG	4 cut(s)	15, 48, 83, 113
Fnu4HI	GCNGC	6 cut(s)	103, 160, 216, 276, 279, 375
Fsp4HI	GCNGC	6 cut(s)	103, 160, 216, 276, 279, 375
GlaI	GCGC	3 cut(s)	282, 325, 340
GluI	GCNGC	6 cut(s)	103, 160, 216, 276, 279, 375
GsuI	CTGGAG	1 cut(s)	135
HaeII	RGCGCY	2 cut(s)	284, 327
HaeIII	GGCC	4 cut(s)	41, 90, 215, 374
HapII	CCGG	2 cut(s)	255, 288
HgaI	GACGC	1 cut(s)	238
HhaI	GCGC	3 cut(s)	283, 326, 341
Hin1II	CATG	4 cut(s)	19, 52, 87, 117
Hin6I	GCGC	3 cut(s)	281, 324, 339
HinP1I	GCGC	3 cut(s)	281, 324, 339
HincII	GTYRAC	2 cut(s)	181, 262
HindII	GTYRAC	2 cut(s)	181, 262
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	2 cut(s)	258, 392
HpaII	CCGG	2 cut(s)	255, 288
Hpy166II	GTNNAC	2 cut(s)	181, 262
Hpy188I	TCNGA	1 cut(s)	397
Hpy8I	GTNNAC	2 cut(s)	181, 262
HpyCH4IV	ACGT	3 cut(s)	126, 177, 344
HpyCH4V	TGCA	5 cut(s)	48, 110, 117, 162, 222
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 165
HpyF3I	CTNAG	1 cut(s)	21
HpySE526I	ACGT	3 cut(s)	126, 177, 344
Hsp92II	CATG	4 cut(s)	19, 52, 87, 117
HspAI	GCGC	3 cut(s)	281, 324, 339
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	9 cut(s)	112, 165, 197, 216, 224, 242, 259, 268, 301
Lsp1109I	GCAGC	3 cut(s)	114, 146, 290
MaeII	ACGT	3 cut(s)	126, 177, 344
MhlI	GDGCHC	1 cut(s)	66
MlsI	TGGCCA	1 cut(s)	90
MluNI	TGGCCA	1 cut(s)	90
MlyI	GAGTC	2 cut(s)	267, 401
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	3 cut(s)	125, 159, 337
Mox20I	TGGCCA	1 cut(s)	90
Mph1103I	ATGCAT	1 cut(s)	119
MscI	TGGCCA	1 cut(s)	90
MslI	CAYNNNNRTG	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	90
MspI	CCGG	2 cut(s)	255, 288
MspR9I	CCNGG	3 cut(s)	212, 255, 288
MvaI	CCWGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	2 cut(s)	11, 165
NciI	CCSGG	2 cut(s)	255, 288
NlaIII	CATG	4 cut(s)	19, 52, 87, 117
NsiI	ATGCAT	1 cut(s)	119
NspI	RCATGY	1 cut(s)	87
PciI	ACATGT	1 cut(s)	83
PkrI	GCNGC	6 cut(s)	104, 161, 217, 277, 280, 376
PleI	GAGTC	2 cut(s)	266, 400
PpsI	GAGTC	2 cut(s)	266, 400
Ppu21I	YACGTR	2 cut(s)	127, 345
PscI	ACATGT	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	195
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	1 cut(s)	53
SatI	GCNGC	6 cut(s)	103, 160, 216, 276, 279, 375
Sau96I	GGNCC	1 cut(s)	195
SchI	GAGTC	2 cut(s)	267, 401
ScrFI	CCNGG	3 cut(s)	212, 255, 288
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	8 cut(s)	27, 129, 145, 157, 180, 240, 347, 351
SinI	GGWCC	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
SsiI	CCGC	6 cut(s)	135, 208, 216, 243, 276, 375
SspI	AATATT	1 cut(s)	385
StyD4I	CCNGG	3 cut(s)	210, 253, 286
TaiI	ACGT	3 cut(s)	129, 180, 347
TauI	GCSGC	3 cut(s)	218, 278, 377
TseI	GCWGC	3 cut(s)	102, 159, 278
VpaK11BI	GGWCC	1 cut(s)	195
XceI	RCATGY	1 cut(s)	87
Zsp2I	ATGCAT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.