Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001353

Physical Location & Seq

Genomic Coordinates Reverse (-)

5928649 .. 5929566

Gene Structure 918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g09980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCCTCTGCAGTGATGAAGCTTGCTTTGGTTGCTCTCATTTGCATTGTGGTAGCCGTCCCCGTCGCCCAAGCCATCACTTGCGGCCAAGTGACCCAAAACGTGGCACCCTGCTTCAACTACGTCAAGAGTGGTGGCGCTGTCCCTGCCGCTTGCTGCAACGGAATTCGCAGCCTCAACAGCGCGGCCAAGACCACCGCTGACCGCAAGCAAACTTGCAATTGCCTGAAGAGTGCAGCTGGAAGCATCAAGGGACTTAACGCTAACCTCGCCGCCGGTCTTCCCGGCAAGTGTGGTGTCAACGTTCCCTACAAGATCAGCACCTCCACCAACTGCAACAATGTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006649 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010556 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0019222 GO:0030054 GO:0030154 GO:0030312 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0042221 GO:0042335 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0060255 GO:0061024 GO:0065007 GO:0071702 GO:0071840 GO:0071944 GO:0090627 GO:0097708 GO:0098791 GO:1901700 GO:1901957

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

117

Amino Acids

11.66

Weight (kDa)

9.44

Isoelectric Point (pI)

20.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	18 - 105	6.5e-06	Probable lipid transfer
Tryp_alpha_amyl	PF00234	28 - 112	1.4e-15	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33355 AT4G33355
fragaria_vesca	FvH4_6g09970 FvH4_6g09980
malus_domestica	MD04G1173600.v1.1 MD04G1173800.v1.1 MD12G1187100.v1.1 MD12G1187200.v1.1 MD12G1187500.v1.1
prunus_persica	Prupe.6G292600_v2.0.a1 Prupe.6G292600_v2.0.a1 Prupe.6G292600_v2.0.a1 Prupe.6G292800_v2.0.a1
pyrus_communis	pycom04g15340 pycom12g17540 pycom12g17550
rosa_chinensis	RchiOBHm_Chr3g0460591 RchiOBHm_Chr3g0460641 RchiOBHm_Chr3g0460651 RchiOBHm_Chr7g0211001
rosa_laevigata	RLG00000003030 RLG00000024990 RLG00000024991
rosa_multiflora	Rmu_co8436807.1_g000001 Rmu_sc0001256.1_g000005 Rmu_sc0001256.1_g000008 Rmu_sc0001256.1_g000009 Rmu_sc0003701.1_g000008 Rmu_sc0011069.1_g000012
rosa_roxburghii	Rroxscaffold_3G00248180 Rroxscaffold_6G00419330 Rroxscaffold_6G00419340
rosa_rugosa	Rorug03G0044200 Rorug03G0044300 Rorug03G0044400 Rorug03G0044500 Rorug07G0123800
rosa_samantha	Rh3AG102300 Rh3AG102400 Rh3BG105900 Rh3BG106000 Rh3BG106100 Rh3CG107900 Rh3CG108000 Rh3DG107400 Rh3DG107600 Rh7AG255400 Rh7BG249900 Rh7CG272000
rosa_wichuraiana	Rw0G010020 Rw3G008690 Rw3G008710 Rw7G021850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	106
AccB7I	CCANNNNNTGG	1 cut(s)	103
AccII	CGCG	1 cut(s)	185
AciI	CCGC	6 cut(s)	84, 150, 185, 198, 205, 273
AclI	AACGTT	1 cut(s)	303
AcoI	YGGCCR	2 cut(s)	85, 186
AcsI	RAATTY	1 cut(s)	165
AcuI	CTGAAG	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	1 cut(s)	118
AjuI	GAANNNNNNNTTGG	2 cut(s)	11, 43
AluBI	AGCT	2 cut(s)	22, 239
AluI	AGCT	2 cut(s)	22, 239
AoxI	GGCC	3 cut(s)	3, 85, 186
ApeKI	GCWGC	3 cut(s)	156, 171, 236
ApoI	RAATTY	1 cut(s)	165
AspLEI	GCGC	2 cut(s)	140, 185
AsuC2I	CCSGG	1 cut(s)	285
BanI	GGYRCC	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	272
BbvI	GCAGC	3 cut(s)	143, 183, 248
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	41
BcnI	CCSGG	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	141
BisI	GCNGC	7 cut(s)	85, 150, 157, 172, 186, 237, 273
BlsI	GCNGC	7 cut(s)	86, 151, 158, 173, 187, 238, 274
Bme1390I	CCNGG	1 cut(s)	285
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	285
BmsI	GCATC	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	272
BpuMI	CCSGG	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse118I	RCCGGY	1 cut(s)	275
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseXI	GCAGC	3 cut(s)	143, 183, 248
BsgI	GTGCAG	1 cut(s)	255
Bsh1236I	CGCG	1 cut(s)	185
BshFI	GGCC	3 cut(s)	5, 87, 188
BshNI	GGYRCC	1 cut(s)	106
BsiSI	CCGG	2 cut(s)	276, 285
BslFI	GGGAC	3 cut(s)	44, 128, 267
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmFI	GGGAC	3 cut(s)	44, 128, 267
BsnI	GGCC	3 cut(s)	5, 87, 188
Bsp143I	GATC	1 cut(s)	315
BspACI	CCGC	6 cut(s)	84, 150, 185, 198, 205, 273
BspANI	GGCC	3 cut(s)	5, 87, 188
BspFNI	CGCG	1 cut(s)	185
BspLI	GGNNCC	1 cut(s)	108
BspMAI	CTGCAG	1 cut(s)	13
BspT107I	GGYRCC	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	275
BssAI	RCCGGY	1 cut(s)	275
BssMI	GATC	1 cut(s)	315
Bst6I	CTCTTC	1 cut(s)	224
BstC8I	GCNNGC	3 cut(s)	24, 154, 209
BstFNI	CGCG	1 cut(s)	185
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	2 cut(s)	140, 185
BstKTI	GATC	1 cut(s)	318
BstMBI	GATC	1 cut(s)	315
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 146, 180, 269
BstSCI	CCNGG	1 cut(s)	283
BstSFI	CTRYAG	1 cut(s)	9
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	3 cut(s)	143, 183, 248
BstV2I	GAAGAC	1 cut(s)	272
BsuRI	GGCC	3 cut(s)	5, 87, 188
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	3 cut(s)	24, 154, 209
CfoI	GCGC	2 cut(s)	140, 185
Cfr10I	RCCGGY	1 cut(s)	275
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CviJI	RGCY	8 cut(s)	5, 22, 56, 74, 87, 174, 188, 239
CviKI_1	RGCY	8 cut(s)	5, 22, 56, 74, 87, 174, 188, 239
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
EaeI	YGGCCR	2 cut(s)	85, 186
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	248
EcoRI	GAATTC	1 cut(s)	165
FaqI	GGGAC	3 cut(s)	44, 128, 267
Fnu4HI	GCNGC	7 cut(s)	85, 150, 157, 172, 186, 237, 273
Fsp4HI	GCNGC	7 cut(s)	85, 150, 157, 172, 186, 237, 273
GlaI	GCGC	2 cut(s)	139, 184
GluI	GCNGC	7 cut(s)	85, 150, 157, 172, 186, 237, 273
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	3 cut(s)	5, 87, 188
HapII	CCGG	2 cut(s)	276, 285
HhaI	GCGC	2 cut(s)	140, 185
Hin6I	GCGC	2 cut(s)	138, 183
HinP1I	GCGC	2 cut(s)	138, 183
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HindIII	AAGCTT	1 cut(s)	20
HpaII	CCGG	2 cut(s)	276, 285
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188III	TCNNGA	1 cut(s)	127
Hpy8I	GTNNAC	1 cut(s)	301
Hpy99I	CGWCG	1 cut(s)	68
HpyCH4IV	ACGT	3 cut(s)	102, 123, 303
HpyCH4V	TGCA	6 cut(s)	11, 45, 159, 219, 236, 336
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 146, 180, 269
HpySE526I	ACGT	3 cut(s)	102, 123, 303
HspAI	GCGC	2 cut(s)	138, 183
Kzo9I	GATC	1 cut(s)	315
LpnPI	CCDG	6 cut(s)	124, 159, 225, 239, 289, 298
Lsp1109I	GCAGC	3 cut(s)	143, 183, 248
LweI	GCATC	1 cut(s)	255
MaeII	ACGT	3 cut(s)	102, 123, 303
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	1 cut(s)	317
MboI	GATC	1 cut(s)	315
MboII	GAAGA	2 cut(s)	241, 272
MfeI	CAATTG	1 cut(s)	220
MluCI	AATT	2 cut(s)	165, 220
MnlI	CCTC	4 cut(s)	16, 185, 278, 334
MseI	TTAA	1 cut(s)	258
MspA1I	CMGCKG	2 cut(s)	200, 239
MspI	CCGG	2 cut(s)	276, 285
MspR9I	CCNGG	1 cut(s)	285
MunI	CAATTG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	4 cut(s)	32, 146, 180, 269
NciI	CCSGG	1 cut(s)	285
NdeII	GATC	1 cut(s)	315
NlaIV	GGNNCC	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	91
PflMI	CCANNNNNTGG	1 cut(s)	103
PkrI	GCNGC	7 cut(s)	86, 151, 158, 173, 187, 238, 274
Psp1406I	AACGTT	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	108
PstI	CTGCAG	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	7 cut(s)	85, 150, 157, 172, 186, 237, 273
Sau3AI	GATC	1 cut(s)	315
ScrFI	CCNGG	1 cut(s)	285
SetI	ASST	7 cut(s)	24, 105, 126, 241, 270, 306, 326
SfaNI	GCATC	1 cut(s)	255
SfcI	CTRYAG	1 cut(s)	9
Sse9I	AATT	2 cut(s)	165, 220
SsiI	CCGC	6 cut(s)	84, 150, 185, 198, 205, 273
StyD4I	CCNGG	1 cut(s)	283
TaiI	ACGT	3 cut(s)	105, 126, 306
TasI	AATT	2 cut(s)	165, 220
TauI	GCSGC	4 cut(s)	87, 152, 188, 275
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	3 cut(s)	156, 171, 236
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	1 cut(s)	32
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	18
Van91I	CCANNNNNTGG	1 cut(s)	103
XapI	RAATTY	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.