Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003701.1

Orthogroup ID

OG0001353

Physical Location & Seq

Genomic Coordinates Reverse (-)

29210 .. 30332

Gene Structure 1123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003701.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atggggactgggacggggaatccccagtatcttattacgcggattggggagggtacggggatggagaatgaaatcgggtatgaagatggggtaaggaaacttggagaaactcaccccactcccctatataatccccatccgcgttgcccgttcactcactcaagctctcccaaaacaagtgattacatacccattccaagctcatcatcctccgagtgcattatggctagctctaatgctatgaagcttactttggttgctctcttgtgcgtggtggttgctttgcccatagcccaagccatcacatgcggccaagtggcgagcaacgctgcatcttgcacaacctacgtgaaaagtggcggcgttgtccctgccgcttgctgcaacggaattagaaaccttaacaccatggccaagaccaccgctgaccgccaggctgtctgcaattgcctcaaacagattgccggtggcatcaaaggactcaaccctaaccttgcagctgggcttcccggcaagtgtggagttagtgttcccttcaagatcagcacctccaccaactgcgccaccgtgaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006649 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010556 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0019222 GO:0030054 GO:0030154 GO:0030312 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0042221 GO:0042335 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0060255 GO:0061024 GO:0065007 GO:0071702 GO:0071840 GO:0071944 GO:0090627 GO:0097708 GO:0098791 GO:1901700 GO:1901957

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

191

Amino Acids

19.66

Weight (kDa)

8.78

Isoelectric Point (pI)

31.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33355 AT4G33355
fragaria_vesca	FvH4_6g09970 FvH4_6g09980
malus_domestica	MD04G1173600.v1.1 MD04G1173800.v1.1 MD12G1187100.v1.1 MD12G1187200.v1.1 MD12G1187500.v1.1
prunus_persica	Prupe.6G292600_v2.0.a1 Prupe.6G292600_v2.0.a1 Prupe.6G292600_v2.0.a1 Prupe.6G292800_v2.0.a1
pyrus_communis	pycom04g15340 pycom12g17540 pycom12g17550
rosa_chinensis	RchiOBHm_Chr3g0460591 RchiOBHm_Chr3g0460641 RchiOBHm_Chr3g0460651 RchiOBHm_Chr7g0211001
rosa_laevigata	RLG00000003030 RLG00000024990 RLG00000024991
rosa_multiflora	Rmu_co8436807.1_g000001 Rmu_sc0001256.1_g000005 Rmu_sc0001256.1_g000008 Rmu_sc0001256.1_g000009 Rmu_sc0003701.1_g000008 Rmu_sc0011069.1_g000012
rosa_roxburghii	Rroxscaffold_3G00248180 Rroxscaffold_6G00419330 Rroxscaffold_6G00419340
rosa_rugosa	Rorug03G0044200 Rorug03G0044300 Rorug03G0044400 Rorug03G0044500 Rorug07G0123800
rosa_samantha	Rh3AG102300 Rh3AG102400 Rh3BG105900 Rh3BG106000 Rh3BG106100 Rh3CG107900 Rh3CG108000 Rh3DG107400 Rh3DG107600 Rh7AG255400 Rh7BG249900 Rh7CG272000
rosa_wichuraiana	Rw0G010020 Rw3G008690 Rw3G008710 Rw7G021850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	40, 142
AciI	CCGC	7 cut(s)	40, 140, 309, 360, 375, 423, 430
AcoI	YGGCCR	2 cut(s)	310, 411
AfaI	GTAC	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	538
AjnI	CCWGG	1 cut(s)	432
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AloI	GAACNNNNNNTCC	2 cut(s)	513, 545
AluBI	AGCT	5 cut(s)	165, 201, 231, 247, 500
AluI	AGCT	5 cut(s)	165, 201, 231, 247, 500
AoxI	GGCC	2 cut(s)	310, 411
ApeKI	GCWGC	3 cut(s)	329, 381, 497
AspLEI	GCGC	1 cut(s)	563
AsuC2I	CCSGG	1 cut(s)	510
AsuHPI	GGTGA	1 cut(s)	104
AsuNHI	GCTAGC	1 cut(s)	227
BalI	TGGCCA	1 cut(s)	413
BbvI	GCAGC	3 cut(s)	316, 368, 509
BccI	CCATC	4 cut(s)	55, 80, 144, 308
BciT130I	CCWGG	1 cut(s)	434
BcnI	CCSGG	1 cut(s)	510
BfaI	CTAG	1 cut(s)	228
BisI	GCNGC	6 cut(s)	310, 330, 361, 375, 382, 498
BlsI	GCNGC	6 cut(s)	311, 331, 362, 376, 383, 499
Bme1390I	CCNGG	2 cut(s)	434, 510
BmrFI	CCNGG	2 cut(s)	434, 510
BmrI	ACTGGG	2 cut(s)	18, 19
BmsI	GCATC	2 cut(s)	341, 480
BmtI	GCTAGC	1 cut(s)	231
BmuI	ACTGGG	2 cut(s)	18, 19
BpuEI	CTTGAG	1 cut(s)	145
BpuMI	CCSGG	1 cut(s)	510
BsaAI	YACGTR	1 cut(s)	349
BsaJI	CCNNGG	1 cut(s)	408
BsaXI	ACNNNNNCTCC	2 cut(s)	513, 543
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	2 cut(s)	13, 25
BseBI	CCWGG	1 cut(s)	434
BseDI	CCNNGG	1 cut(s)	408
BseGI	GGATG	3 cut(s)	66, 136, 206
BseNI	ACTGG	2 cut(s)	13, 25
BseXI	GCAGC	3 cut(s)	316, 368, 509
BseYI	CCCAGC	1 cut(s)	500
Bsh1236I	CGCG	2 cut(s)	40, 142
BshFI	GGCC	2 cut(s)	312, 413
BsiSI	CCGG	2 cut(s)	465, 510
BslFI	GGGAC	3 cut(s)	19, 25, 353
BsmFI	GGGAC	3 cut(s)	19, 25, 353
BsnI	GGCC	2 cut(s)	312, 413
Bsp143I	GATC	1 cut(s)	540
Bsp19I	CCATGG	1 cut(s)	408
BspACI	CCGC	7 cut(s)	40, 140, 309, 360, 375, 423, 430
BspANI	GGCC	2 cut(s)	312, 413
BspFNI	CGCG	2 cut(s)	40, 142
BspOI	GCTAGC	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	464
BsrI	ACTGG	2 cut(s)	13, 25
BssAI	RCCGGY	1 cut(s)	464
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	1 cut(s)	540
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	434
Bst4CI	ACNGT	1 cut(s)	568
BstBAI	YACGTR	1 cut(s)	349
BstC8I	GCNNGC	3 cut(s)	229, 322, 379
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	3 cut(s)	66, 136, 206
BstFNI	CGCG	2 cut(s)	40, 142
BstHHI	GCGC	1 cut(s)	563
BstKTI	GATC	1 cut(s)	543
BstMBI	GATC	1 cut(s)	540
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	1 cut(s)	434
BstNSI	RCATGY	1 cut(s)	309
BstSCI	CCNGG	2 cut(s)	432, 508
BstUI	CGCG	2 cut(s)	40, 142
BstV1I	GCAGC	3 cut(s)	316, 368, 509
BsuRI	GGCC	2 cut(s)	312, 413
BtgI	CCRYGG	1 cut(s)	408
BtsCI	GGATG	3 cut(s)	66, 136, 206
Cac8I	GCNNGC	3 cut(s)	229, 322, 379
CfoI	GCGC	1 cut(s)	563
Cfr10I	RCCGGY	1 cut(s)	464
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	2 cut(s)	306, 409
CviQI	GTAC	1 cut(s)	54
DpnI	GATC	1 cut(s)	542
DpnII	GATC	1 cut(s)	540
EaeI	YGGCCR	2 cut(s)	310, 411
Eco130I	CCWWGG	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	432
EcoT14I	CCWWGG	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	2 cut(s)	309, 412
FaiI	YATR	9 cut(s)	81, 127, 129, 188, 224, 242, 290, 307, 410
FaqI	GGGAC	3 cut(s)	19, 25, 353
FatI	CATG	2 cut(s)	305, 408
Fnu4HI	GCNGC	6 cut(s)	310, 330, 361, 375, 382, 498
FokI	GGATG	3 cut(s)	73, 123, 193
Fsp4HI	GCNGC	6 cut(s)	310, 330, 361, 375, 382, 498
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	1 cut(s)	562
GluI	GCNGC	6 cut(s)	310, 330, 361, 375, 382, 498
GsaI	CCCAGC	1 cut(s)	504
HaeIII	GGCC	2 cut(s)	312, 413
HapII	CCGG	2 cut(s)	465, 510
HhaI	GCGC	1 cut(s)	563
Hin1II	CATG	2 cut(s)	309, 412
Hin6I	GCGC	1 cut(s)	561
HinP1I	GCGC	1 cut(s)	561
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	2 cut(s)	19, 480
HpaII	CCGG	2 cut(s)	465, 510
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	1 cut(s)	538
Hpy8I	GTNNAC	1 cut(s)	153
HpyAV	CCTTC	1 cut(s)	544
HpyCH4III	ACNGT	1 cut(s)	568
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	6 cut(s)	219, 332, 339, 384, 444, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	2 cut(s)	309, 412
HspAI	GCGC	1 cut(s)	561
Kzo9I	GATC	1 cut(s)	540
LpnPI	CCDG	7 cut(s)	38, 384, 419, 446, 478, 486, 523
Lsp1109I	GCAGC	3 cut(s)	316, 368, 509
LweI	GCATC	2 cut(s)	341, 480
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	1 cut(s)	348
MalI	GATC	1 cut(s)	542
MboI	GATC	1 cut(s)	540
MboII	GAAGA	1 cut(s)	95
MfeI	CAATTG	1 cut(s)	445
MlsI	TGGCCA	1 cut(s)	413
MluCI	AATT	2 cut(s)	390, 445
MluNI	TGGCCA	1 cut(s)	413
MlyI	GAGTC	1 cut(s)	474
MnlI	CCTC	4 cut(s)	43, 220, 461, 559
Mox20I	TGGCCA	1 cut(s)	413
MscI	TGGCCA	1 cut(s)	413
MseI	TTAA	1 cut(s)	402
Msp20I	TGGCCA	1 cut(s)	413
MspA1I	CMGCKG	2 cut(s)	425, 500
MspI	CCGG	2 cut(s)	465, 510
MspR9I	CCNGG	2 cut(s)	434, 510
MunI	CAATTG	1 cut(s)	445
MvaI	CCWGG	1 cut(s)	434
MvnI	CGCG	2 cut(s)	40, 142
MwoI	GCNNNNNNNGC	1 cut(s)	326
NciI	CCSGG	1 cut(s)	510
NcoI	CCATGG	1 cut(s)	408
NdeII	GATC	1 cut(s)	540
NheI	GCTAGC	1 cut(s)	227
NlaIII	CATG	2 cut(s)	309, 412
NspI	RCATGY	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	6 cut(s)	311, 331, 362, 376, 383, 499
PleI	GAGTC	1 cut(s)	474
PpsI	GAGTC	1 cut(s)	474
Ppu21I	YACGTR	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	432
PspFI	CCCAGC	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	432
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	6 cut(s)	310, 330, 361, 375, 382, 498
Sau3AI	GATC	1 cut(s)	540
SchI	GAGTC	1 cut(s)	474
ScrFI	CCNGG	2 cut(s)	434, 510
SfaNI	GCATC	2 cut(s)	341, 480
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
Sse9I	AATT	2 cut(s)	390, 445
SsiI	CCGC	7 cut(s)	40, 140, 309, 360, 375, 423, 430
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	2 cut(s)	432, 508
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	1 cut(s)	568
TaiI	ACGT	1 cut(s)	351
TasI	AATT	2 cut(s)	390, 445
TauI	GCSGC	3 cut(s)	312, 363, 377
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TseI	GCWGC	3 cut(s)	329, 381, 497
TspDTI	ATGAA	3 cut(s)	84, 96, 257
TspGWI	ACGGA	1 cut(s)	402
XceI	RCATGY	1 cut(s)	309
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.