Rorug03G0044200

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
3438508 .. 3438888
381 bp
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UTR
Exon/CDS
Intron
Rorug03G0044200.1

Sequence Viewer

Length: 381 bp
ATGAGGATGGTGAAAAGGAGGGCTGAAGATTGTGATAGGGAAATGAAGGAGAAGCTGAGTTTGATTGAGAAATCAAAAGAGGAAATGATTCGTGCGGCGGATTTGAAAGGGAAAGAGTTCTGTTTGCTGAAGAAATCAATGGAGGAGTGGTGGAGTAAGCTTGAAGTGAAGGAGAGGGAGCTTGAAGGATGGGTTGATAAGTTGGAATCAAAGGACACTAGCAAGCCCATCACCGCCGCTGTGACAAAACCACGTCCAGTCAACTGCTTGAATGCCGGAAAATCGATCCAACGCAGAAAGAGCAGGAACCACCAACTCCAGCGTCCACCCTCACCAATCGCCAGGATTAGGATATCCCGATCCCCAACCCGGATGCCCTAG

Protein Analysis

126

Amino Acids

14.82

Weight (kDa)

10.06

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 95, 98, 234, 237
AclWI GGATC 2 cut(s) 280, 354
AcuI CTGAAG 2 cut(s) 45, 149
AfiI CCNNNNNNNGG 2 cut(s) 348, 369
AgsI TTSAA 4 cut(s) 106, 164, 185, 271
AjiI CACGTC 1 cut(s) 254
AjnI CCWGG 1 cut(s) 341
AluBI AGCT 3 cut(s) 55, 160, 181
AluI AGCT 3 cut(s) 55, 160, 181
AlwI GGATC 2 cut(s) 280, 354
Asp700I GAANNNNTTC 2 cut(s) 87, 116
AsuC2I CCSGG 1 cut(s) 370
AsuHPI GGTGA 3 cut(s) 22, 223, 324
BccI CCATC 2 cut(s) 183, 236
BciT130I CCWGG 1 cut(s) 343
BcnI CCSGG 1 cut(s) 370
BfaI CTAG 2 cut(s) 219, 379
BisI GCNGC 2 cut(s) 96, 237
BlsI GCNGC 2 cut(s) 97, 238
Bme1390I CCNGG 2 cut(s) 343, 370
BmgBI CACGTC 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 308
BmrFI CCNGG 2 cut(s) 343, 370
BmsI GCATC 1 cut(s) 363
BpmI CTGGAG 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 370
Bsa29I ATCGAT 1 cut(s) 284
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 2 cut(s) 348, 369
Bse1I ACTGG 1 cut(s) 257
BseBI CCWGG 1 cut(s) 343
BseCI ATCGAT 1 cut(s) 284
BseGI GGATG 3 cut(s) 12, 194, 378
BseLI CCNNNNNNNGG 2 cut(s) 348, 369
BseMII CTCAG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 257
BseRI GAGGAG 1 cut(s) 158
BshVI ATCGAT 1 cut(s) 284
BsiSI CCGG 2 cut(s) 276, 370
BslI CCNNNNNNNGG 2 cut(s) 348, 369
BsmI GAATGC 1 cut(s) 277
Bsp143I GATC 2 cut(s) 285, 359
BspACI CCGC 4 cut(s) 95, 98, 234, 237
BspCNI CTCAG 1 cut(s) 48
BspDI ATCGAT 1 cut(s) 284
BspLI GGNNCC 1 cut(s) 308
BspPI GGATC 2 cut(s) 280, 354
BsrI ACTGG 1 cut(s) 257
BssMI GATC 2 cut(s) 285, 359
Bst2UI CCWGG 1 cut(s) 343
BstC8I GCNNGC 1 cut(s) 224
BstDEI CTNAG 1 cut(s) 56
BstF5I GGATG 3 cut(s) 12, 194, 378
BstKTI GATC 2 cut(s) 288, 362
BstMBI GATC 2 cut(s) 285, 359
BstMWI GCNNNNNNNGC 1 cut(s) 300
BstNI CCWGG 1 cut(s) 343
BstSCI CCNGG 2 cut(s) 341, 368
Bsu15I ATCGAT 1 cut(s) 284
BsuTUI ATCGAT 1 cut(s) 284
BtrI CACGTC 1 cut(s) 254
BtsCI GGATG 3 cut(s) 12, 194, 378
Cac8I GCNNGC 1 cut(s) 224
ClaI ATCGAT 1 cut(s) 284
CseI GACGC 1 cut(s) 311
CviJI RGCY 5 cut(s) 23, 55, 160, 181, 226
CviKI_1 RGCY 5 cut(s) 23, 55, 160, 181, 226
DdeI CTNAG 1 cut(s) 56
DpnI GATC 2 cut(s) 287, 361
DpnII GATC 2 cut(s) 285, 359
EciI GGCGGA 1 cut(s) 113
Eco32I GATATC 1 cut(s) 354
Eco57I CTGAAG 2 cut(s) 45, 149
EcoRII CCWGG 1 cut(s) 341
EcoRV GATATC 1 cut(s) 354
Fnu4HI GCNGC 2 cut(s) 96, 237
FokI GGATG 2 cut(s) 19, 201
Fsp4HI GCNGC 2 cut(s) 96, 237
FspBI CTAG 2 cut(s) 219, 379
GluI GCNGC 2 cut(s) 96, 237
GsuI CTGGAG 1 cut(s) 302
HapII CCGG 2 cut(s) 276, 370
HgaI GACGC 1 cut(s) 311
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 2 cut(s) 88, 206
HpaII CCGG 2 cut(s) 276, 370
HphI GGTGA 3 cut(s) 22, 223, 324
Hpy166II GTNNAC 2 cut(s) 262, 326
Hpy188III TCNNGA 1 cut(s) 357
Hpy8I GTNNAC 2 cut(s) 262, 326
HpyAV CCTTC 3 cut(s) 40, 163, 179
HpyCH4IV ACGT 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 300
HpyF3I CTNAG 1 cut(s) 56
HpySE526I ACGT 1 cut(s) 253
Kzo9I GATC 2 cut(s) 285, 359
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 6 cut(s) 270, 289, 289, 328, 332, 355
LweI GCATC 1 cut(s) 363
MaeI CTAG 2 cut(s) 219, 379
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 1 cut(s) 241
MalI GATC 2 cut(s) 287, 361
MboI GATC 2 cut(s) 285, 359
MboII GAAGA 2 cut(s) 38, 142
MmeI TCCRAC 2 cut(s) 183, 313
MnlI CCTC 5 cut(s) 12, 73, 136, 168, 340
MroXI GAANNNNTTC 2 cut(s) 87, 116
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 2 cut(s) 276, 370
MspR9I CCNGG 2 cut(s) 343, 370
Mva1269I GAATGC 1 cut(s) 277
MvaI CCWGG 1 cut(s) 343
MwoI GCNNNNNNNGC 1 cut(s) 300
NciI CCSGG 1 cut(s) 370
NdeII GATC 2 cut(s) 285, 359
NlaIV GGNNCC 1 cut(s) 308
NmuCI GTSAC 1 cut(s) 241
PctI GAATGC 1 cut(s) 277
PdmI GAANNNNTTC 2 cut(s) 87, 116
PfeI GAWTC 2 cut(s) 88, 206
PkrI GCNGC 2 cut(s) 97, 238
Psp6I CCWGG 1 cut(s) 341
PspGI CCWGG 1 cut(s) 341
PspN4I GGNNCC 1 cut(s) 308
SatI GCNGC 2 cut(s) 96, 237
Sau3AI GATC 2 cut(s) 285, 359
ScrFI CCNGG 2 cut(s) 343, 370
SetI ASST 4 cut(s) 57, 162, 183, 256
SfaNI GCATC 1 cut(s) 363
SsiI CCGC 4 cut(s) 95, 98, 234, 237
SspMI CTAG 2 cut(s) 219, 379
StyD4I CCNGG 2 cut(s) 341, 368
TaiI ACGT 1 cut(s) 256
TaqI TCGA 1 cut(s) 284
TauI GCSGC 2 cut(s) 98, 239
TfiI GAWTC 2 cut(s) 88, 206
TseFI GTSAC 1 cut(s) 241
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 59
XmnI GAANNNNTTC 2 cut(s) 87, 116
XspI CTAG 2 cut(s) 219, 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.