Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001353

Physical Location & Seq

Genomic Coordinates Reverse (-)

8508129 .. 8510575

Gene Structure 2447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG108000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCATCTGCAGTGGTGAAGCTTGCTTTGGTGGCTCTCATGTGCATTGTGGTGGCTGTCCCCGTCGCCCAGGCCATCACTTGCGGCCAAGTAACCCAAAGCGTGGCACCGTGCATCAACTACGTCAAGAACGGTGGCTCTATCCCTGCCACTTGCTGCAACGGAATCCGCAACCTTAACAGCCAGGCCAAGACCACAGCCGACCGCAAGCAAACTTGTACTTGCCTAAAGAACGCAGCTGGATCCATTCCCGGAGTTAACCCTAACCTCGCCGCTGGTCTTCCCGGCAAATGTGGTGTCAGCGTTCCCTACAAGATCAGCACGGCCACCAACTGCAACAATGTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006649 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010556 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0019222 GO:0030054 GO:0030154 GO:0030312 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0042221 GO:0042335 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0060255 GO:0061024 GO:0065007 GO:0071702 GO:0071840 GO:0071944 GO:0090627 GO:0097708 GO:0098791 GO:1901700 GO:1901957

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

116

Amino Acids

11.71

Weight (kDa)

9.34

Isoelectric Point (pI)

20.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	17 - 105	1.8e-06	Probable lipid transfer
Tryp_alpha_amyl	PF00234	28 - 112	2.2e-14	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33355 AT4G33355
fragaria_vesca	FvH4_6g09970 FvH4_6g09980
malus_domestica	MD04G1173600.v1.1 MD04G1173800.v1.1 MD12G1187100.v1.1 MD12G1187200.v1.1 MD12G1187500.v1.1
prunus_persica	Prupe.6G292600_v2.0.a1 Prupe.6G292600_v2.0.a1 Prupe.6G292600_v2.0.a1 Prupe.6G292800_v2.0.a1
pyrus_communis	pycom04g15340 pycom12g17540 pycom12g17550
rosa_chinensis	RchiOBHm_Chr3g0460591 RchiOBHm_Chr3g0460641 RchiOBHm_Chr3g0460651 RchiOBHm_Chr7g0211001
rosa_laevigata	RLG00000003030 RLG00000024990 RLG00000024991
rosa_multiflora	Rmu_co8436807.1_g000001 Rmu_sc0001256.1_g000005 Rmu_sc0001256.1_g000008 Rmu_sc0001256.1_g000009 Rmu_sc0003701.1_g000008 Rmu_sc0011069.1_g000012
rosa_roxburghii	Rroxscaffold_3G00248180 Rroxscaffold_6G00419330 Rroxscaffold_6G00419340
rosa_rugosa	Rorug03G0044200 Rorug03G0044300 Rorug03G0044400 Rorug03G0044500 Rorug07G0123800
rosa_samantha	Rh3AG102300 Rh3AG102400 Rh3BG105900 Rh3BG106000 Rh3BG106100 Rh3CG107900 Rh3CG108000 Rh3DG107400 Rh3DG107600 Rh7AG255400 Rh7BG249900 Rh7CG272000
rosa_wichuraiana	Rw0G010020 Rw3G008690 Rw3G008710 Rw7G021850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	106
AccB7I	CCANNNNNTGG	1 cut(s)	103
AciI	CCGC	4 cut(s)	84, 169, 205, 273
AclWI	GGATC	2 cut(s)	237, 250
AcoI	YGGCCR	2 cut(s)	85, 324
AfaI	GTAC	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	103
AjnI	CCWGG	2 cut(s)	69, 183
AjuI	GAANNNNNNNTTGG	2 cut(s)	11, 43
AluBI	AGCT	2 cut(s)	22, 239
AluI	AGCT	2 cut(s)	22, 239
AlwI	GGATC	2 cut(s)	237, 250
AoxI	GGCC	4 cut(s)	72, 85, 186, 324
ApeKI	GCWGC	2 cut(s)	156, 236
ArsI	GACNNNNNNTTYG	2 cut(s)	282, 314
AsuC2I	CCSGG	2 cut(s)	252, 285
AsuHPI	GGTGA	1 cut(s)	28
BamHI	GGATCC	1 cut(s)	242
BanI	GGYRCC	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	143, 248
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	339
BciT130I	CCWGG	2 cut(s)	71, 185
BcnI	CCSGG	2 cut(s)	252, 285
BfmI	CTRYAG	1 cut(s)	9
BisI	GCNGC	4 cut(s)	85, 157, 237, 273
BlsI	GCNGC	4 cut(s)	86, 158, 238, 274
Bme1390I	CCNGG	4 cut(s)	71, 185, 252, 285
BmiI	GGNNCC	2 cut(s)	108, 244
BmrFI	CCNGG	4 cut(s)	71, 185, 252, 285
BmsI	GCATC	2 cut(s)	14, 123
BpiI	GAAGAC	1 cut(s)	272
BpuMI	CCSGG	2 cut(s)	252, 285
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
BseBI	CCWGG	2 cut(s)	71, 185
BseDI	CCNNGG	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseXI	GCAGC	2 cut(s)	143, 248
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	4 cut(s)	74, 87, 188, 326
BshNI	GGYRCC	1 cut(s)	106
BsiEI	CGRYCG	1 cut(s)	205
BsiSI	CCGG	2 cut(s)	252, 285
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	4 cut(s)	74, 87, 188, 326
Bsp143I	GATC	2 cut(s)	242, 315
BspACI	CCGC	4 cut(s)	84, 169, 205, 273
BspANI	GGCC	4 cut(s)	74, 87, 188, 326
BspLI	GGNNCC	2 cut(s)	108, 244
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	2 cut(s)	237, 250
BspT107I	GGYRCC	1 cut(s)	106
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	242, 315
Bst2UI	CCWGG	2 cut(s)	71, 185
Bst4CI	ACNGT	2 cut(s)	111, 134
BstC8I	GCNNGC	2 cut(s)	24, 209
BstKTI	GATC	2 cut(s)	245, 318
BstMBI	GATC	2 cut(s)	242, 315
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNI	CCWGG	2 cut(s)	71, 185
BstSCI	CCNGG	4 cut(s)	69, 183, 250, 283
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	143, 248
BstV2I	GAAGAC	1 cut(s)	272
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
BsuRI	GGCC	4 cut(s)	74, 87, 188, 326
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	2 cut(s)	24, 209
Csp6I	GTAC	1 cut(s)	219
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CviAII	CATG	1 cut(s)	40
CviQI	GTAC	1 cut(s)	219
DpnI	GATC	2 cut(s)	244, 317
DpnII	GATC	2 cut(s)	242, 315
EaeI	YGGCCR	2 cut(s)	85, 324
EcoRII	CCWGG	2 cut(s)	69, 183
FaeI	CATG	1 cut(s)	43
FaiI	YATR	1 cut(s)	41
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	1 cut(s)	39
Fnu4HI	GCNGC	4 cut(s)	85, 157, 237, 273
Fsp4HI	GCNGC	4 cut(s)	85, 157, 237, 273
GluI	GCNGC	4 cut(s)	85, 157, 237, 273
HaeIII	GGCC	4 cut(s)	74, 87, 188, 326
HapII	CCGG	2 cut(s)	252, 285
Hin1II	CATG	1 cut(s)	43
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	1 cut(s)	165
HpaI	GTTAAC	1 cut(s)	259
HpaII	CCGG	2 cut(s)	252, 285
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188III	TCNNGA	1 cut(s)	127
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	1 cut(s)	68
HpyCH4III	ACNGT	2 cut(s)	111, 134
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	5 cut(s)	11, 45, 114, 159, 336
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	43
KspAI	GTTAAC	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	242, 315
LpnPI	CCDG	9 cut(s)	56, 83, 159, 170, 197, 225, 261, 265, 298
Lsp1109I	GCAGC	2 cut(s)	143, 248
LweI	GCATC	2 cut(s)	14, 123
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	2 cut(s)	244, 317
MboI	GATC	2 cut(s)	242, 315
MboII	GAAGA	1 cut(s)	272
MflI	RGATCY	1 cut(s)	242
MnlI	CCTC	1 cut(s)	278
MseI	TTAA	2 cut(s)	177, 258
MslI	CAYNNNNRTG	1 cut(s)	50
MspA1I	CMGCKG	2 cut(s)	239, 275
MspI	CCGG	2 cut(s)	252, 285
MspR9I	CCNGG	4 cut(s)	71, 185, 252, 285
MvaI	CCWGG	2 cut(s)	71, 185
MwoI	GCNNNNNNNGC	1 cut(s)	32
NciI	CCSGG	2 cut(s)	252, 285
NdeII	GATC	2 cut(s)	242, 315
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	2 cut(s)	108, 244
PfeI	GAWTC	1 cut(s)	165
PflMI	CCANNNNNTGG	1 cut(s)	103
PfoI	TCCNGGA	1 cut(s)	250
PkrI	GCNGC	4 cut(s)	86, 158, 238, 274
Psp6I	CCWGG	2 cut(s)	69, 183
PspGI	CCWGG	2 cut(s)	69, 183
PspN4I	GGNNCC	2 cut(s)	108, 244
PstI	CTGCAG	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	242
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
RseI	CAYNNNNRTG	1 cut(s)	50
SaqAI	TTAA	2 cut(s)	177, 258
SatI	GCNGC	4 cut(s)	85, 157, 237, 273
Sau3AI	GATC	2 cut(s)	242, 315
ScrFI	CCNGG	4 cut(s)	71, 185, 252, 285
SetI	ASST	5 cut(s)	24, 126, 177, 241, 270
SfaNI	GCATC	2 cut(s)	14, 123
SfcI	CTRYAG	1 cut(s)	9
SmiMI	CAYNNNNRTG	1 cut(s)	50
SsiI	CCGC	4 cut(s)	84, 169, 205, 273
StyD4I	CCNGG	4 cut(s)	69, 183, 250, 283
TaaI	ACNGT	2 cut(s)	111, 134
TaiI	ACGT	1 cut(s)	126
TatI	WGTACW	1 cut(s)	218
TauI	GCSGC	2 cut(s)	87, 275
TfiI	GAWTC	1 cut(s)	165
Tru1I	TTAA	2 cut(s)	177, 258
Tru9I	TTAA	2 cut(s)	177, 258
TscAI	CASTG	1 cut(s)	18
TseI	GCWGC	2 cut(s)	156, 236
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	18
Van91I	CCANNNNNTGG	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.