Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001353

Physical Location & Seq

Genomic Coordinates Reverse (-)

5915391 .. 5916137

Gene Structure 747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g09970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCTAGCTCTACTGCTATGAAGCTTTCTTTGGTCGCTCTCTTGTGCATTGTTGTTGCTTTGCCCATAGCCCAAGCCATCACCTGCGGCCAAGTAGCGAGTAGCATTTCACCTTGCGTAAACTACGTGAAGAGTGGCGGCGCTGTCCCTGCCGCTTGCTGCAACGGAATTAGATCCCTTAACAGCGCGGCTAAGACCACTGCTGACCGCCAGGCCACCTGCAATTGCCTCAAACAGGCCTCCGGTGCCATCAAAGGACTCAACCCTAGCCTTGCAGCTGGGCTTCCAGGCAAGTGTGGGGTTAGCGTTCCGTACAAGATCAGCACCTCCACCAACTGCGCTGCCGTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006649 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010556 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0019222 GO:0030054 GO:0030154 GO:0030312 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0042221 GO:0042335 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0060255 GO:0061024 GO:0065007 GO:0071702 GO:0071840 GO:0071944 GO:0090627 GO:0097708 GO:0098791 GO:1901700 GO:1901957

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

118

Amino Acids

11.54

Weight (kDa)

9.34

Isoelectric Point (pI)

27.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	22 - 106	4.1e-06	Probable lipid transfer
Tryp_alpha_amyl	PF00234	29 - 113	4.8e-15	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33355 AT4G33355
fragaria_vesca	FvH4_6g09970 FvH4_6g09980
malus_domestica	MD04G1173600.v1.1 MD04G1173800.v1.1 MD12G1187100.v1.1 MD12G1187200.v1.1 MD12G1187500.v1.1
prunus_persica	Prupe.6G292600_v2.0.a1 Prupe.6G292600_v2.0.a1 Prupe.6G292600_v2.0.a1 Prupe.6G292800_v2.0.a1
pyrus_communis	pycom04g15340 pycom12g17540 pycom12g17550
rosa_chinensis	RchiOBHm_Chr3g0460591 RchiOBHm_Chr3g0460641 RchiOBHm_Chr3g0460651 RchiOBHm_Chr7g0211001
rosa_laevigata	RLG00000003030 RLG00000024990 RLG00000024991
rosa_multiflora	Rmu_co8436807.1_g000001 Rmu_sc0001256.1_g000005 Rmu_sc0001256.1_g000008 Rmu_sc0001256.1_g000009 Rmu_sc0003701.1_g000008 Rmu_sc0011069.1_g000012
rosa_roxburghii	Rroxscaffold_3G00248180 Rroxscaffold_6G00419330 Rroxscaffold_6G00419340
rosa_rugosa	Rorug03G0044200 Rorug03G0044300 Rorug03G0044400 Rorug03G0044500 Rorug07G0123800
rosa_samantha	Rh3AG102300 Rh3AG102400 Rh3BG105900 Rh3BG106000 Rh3BG106100 Rh3CG107900 Rh3CG108000 Rh3DG107400 Rh3DG107600 Rh7AG255400 Rh7BG249900 Rh7CG272000
rosa_wichuraiana	Rw0G010020 Rw3G008690 Rw3G008710 Rw7G021850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	92, 227
Acc36I	ACCTGC	2 cut(s)	92, 227
AccB1I	GGYRCC	1 cut(s)	245
AccII	CGCG	1 cut(s)	188
AciI	CCGC	5 cut(s)	87, 138, 153, 188, 208
AclWI	GGATC	1 cut(s)	168
AcoI	YGGCCR	1 cut(s)	88
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	235
AjnI	CCWGG	2 cut(s)	210, 286
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	3 cut(s)	9, 25, 278
AluI	AGCT	3 cut(s)	9, 25, 278
AlwI	GGATC	1 cut(s)	168
AoxI	GGCC	3 cut(s)	88, 213, 237
ApeKI	GCWGC	3 cut(s)	159, 275, 341
AspLEI	GCGC	3 cut(s)	143, 188, 341
AsuHPI	GGTGA	2 cut(s)	73, 102
AsuNHI	GCTAGC	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	245
BbvI	GCAGC	3 cut(s)	146, 287, 328
BccI	CCATC	2 cut(s)	86, 257
BceAI	ACGGC	1 cut(s)	329
BciT130I	CCWGG	2 cut(s)	212, 288
BfaI	CTAG	2 cut(s)	6, 267
BfoI	RGCGCY	1 cut(s)	144
BfuAI	ACCTGC	2 cut(s)	92, 227
BisI	GCNGC	7 cut(s)	88, 139, 153, 160, 189, 276, 342
BlsI	GCNGC	7 cut(s)	89, 140, 154, 161, 190, 277, 343
Bme1390I	CCNGG	2 cut(s)	212, 288
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	2 cut(s)	212, 288
BmtI	GCTAGC	1 cut(s)	9
BsaAI	YACGTR	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
BseBI	CCWGG	2 cut(s)	212, 288
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseXI	GCAGC	3 cut(s)	146, 287, 328
BseYI	CCCAGC	1 cut(s)	278
Bsh1236I	CGCG	1 cut(s)	188
BshFI	GGCC	3 cut(s)	90, 215, 239
BshNI	GGYRCC	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	3 cut(s)	90, 215, 239
Bsp143I	GATC	2 cut(s)	173, 318
BspACI	CCGC	5 cut(s)	87, 138, 153, 188, 208
BspANI	GGCC	3 cut(s)	90, 215, 239
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	1 cut(s)	247
BspMI	ACCTGC	2 cut(s)	92, 227
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	168
BspT107I	GGYRCC	1 cut(s)	245
BssMI	GATC	2 cut(s)	173, 318
Bst2UI	CCWGG	2 cut(s)	212, 288
Bst6I	CTCTTC	1 cut(s)	125
BstBAI	YACGTR	1 cut(s)	127
BstC8I	GCNNGC	2 cut(s)	7, 157
BstDEI	CTNAG	1 cut(s)	192
BstENI	CCTNNNNNAGG	1 cut(s)	233
BstFNI	CGCG	1 cut(s)	188
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	3 cut(s)	143, 188, 341
BstKTI	GATC	2 cut(s)	176, 321
BstMBI	GATC	2 cut(s)	173, 318
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 245
BstNI	CCWGG	2 cut(s)	212, 288
BstSCI	CCNGG	2 cut(s)	210, 286
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	3 cut(s)	146, 287, 328
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
BsuRI	GGCC	3 cut(s)	90, 215, 239
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
BveI	ACCTGC	2 cut(s)	92, 227
Cac8I	GCNNGC	2 cut(s)	7, 157
CfoI	GCGC	3 cut(s)	143, 188, 341
Csp6I	GTAC	1 cut(s)	313
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	2 cut(s)	175, 320
DpnII	GATC	2 cut(s)	173, 318
EaeI	YGGCCR	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco147I	AGGCCT	1 cut(s)	239
EcoNI	CCTNNNNNAGG	1 cut(s)	233
EcoRII	CCWGG	2 cut(s)	210, 286
FaiI	YATR	2 cut(s)	20, 68
FaqI	GGGAC	1 cut(s)	131
Fnu4HI	GCNGC	7 cut(s)	88, 139, 153, 160, 189, 276, 342
Fsp4HI	GCNGC	7 cut(s)	88, 139, 153, 160, 189, 276, 342
FspBI	CTAG	2 cut(s)	6, 267
GlaI	GCGC	3 cut(s)	142, 187, 340
GluI	GCNGC	7 cut(s)	88, 139, 153, 160, 189, 276, 342
GsaI	CCCAGC	1 cut(s)	282
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	3 cut(s)	90, 215, 239
HapII	CCGG	1 cut(s)	243
HhaI	GCGC	3 cut(s)	143, 188, 341
Hin6I	GCGC	3 cut(s)	141, 186, 339
HinP1I	GCGC	3 cut(s)	141, 186, 339
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	1 cut(s)	258
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	2 cut(s)	73, 102
Hpy166II	GTNNAC	1 cut(s)	121
Hpy8I	GTNNAC	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	4 cut(s)	48, 162, 222, 275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 245
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	1 cut(s)	126
HspAI	GCGC	3 cut(s)	141, 186, 339
Kzo9I	GATC	2 cut(s)	173, 318
Lsp1109I	GCAGC	3 cut(s)	146, 287, 328
MaeI	CTAG	2 cut(s)	6, 267
MaeII	ACGT	1 cut(s)	126
MalI	GATC	2 cut(s)	175, 320
MboI	GATC	2 cut(s)	173, 318
MboII	GAAGA	1 cut(s)	142
MfeI	CAATTG	1 cut(s)	223
MflI	RGATCY	1 cut(s)	173
MluCI	AATT	2 cut(s)	168, 223
MlyI	GAGTC	1 cut(s)	252
MnlI	CCTC	3 cut(s)	239, 250, 337
MseI	TTAA	1 cut(s)	180
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	2 cut(s)	212, 288
MunI	CAATTG	1 cut(s)	223
MvaI	CCWGG	2 cut(s)	212, 288
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	2 cut(s)	149, 245
NdeII	GATC	2 cut(s)	173, 318
NheI	GCTAGC	1 cut(s)	5
NlaIV	GGNNCC	1 cut(s)	247
PaqCI	CACCTGC	2 cut(s)	92, 227
PceI	AGGCCT	1 cut(s)	239
PkrI	GCNGC	7 cut(s)	89, 140, 154, 161, 190, 277, 343
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
Ppu21I	YACGTR	1 cut(s)	127
Psp6I	CCWGG	2 cut(s)	210, 286
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	2 cut(s)	210, 286
PspN4I	GGNNCC	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	173
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	7 cut(s)	88, 139, 153, 160, 189, 276, 342
Sau3AI	GATC	2 cut(s)	173, 318
SchI	GAGTC	1 cut(s)	252
ScrFI	CCNGG	2 cut(s)	212, 288
SetI	ASST	8 cut(s)	11, 27, 86, 115, 129, 221, 280, 329
Sse9I	AATT	2 cut(s)	168, 223
SseBI	AGGCCT	1 cut(s)	239
SsiI	CCGC	5 cut(s)	87, 138, 153, 188, 208
SspMI	CTAG	2 cut(s)	6, 267
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	210, 286
TaiI	ACGT	1 cut(s)	129
TasI	AATT	2 cut(s)	168, 223
TauI	GCSGC	4 cut(s)	90, 141, 155, 191
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	3 cut(s)	159, 275, 341
TspDTI	ATGAA	1 cut(s)	35
TspGWI	ACGGA	2 cut(s)	180, 300
TspRI	CASTG	1 cut(s)	205
XagI	CCTNNNNNAGG	1 cut(s)	233
XspI	CTAG	2 cut(s)	6, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.