Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00416

Orthogroup ID

OG0001353

Physical Location & Seq

Genomic Coordinates Reverse (-)

1054 .. 2259

Gene Structure 1206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G010020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCTAGCTCTAATGCTATGAAGCTTACTTTGGTTGCTCTCTTGTGCGTGGTGGTTGCTTTGCCCATAGCCCAAGCCATCACATGCGGCCAAGTGGCGAGCAACGTTGCACCTTGCACAACCTACGTGAAGAGTGGCGGCGTTGTCCCTGCCGCTTGCTGCAACGGAGTTAGAAACCTTAACGCCATGGCCAAGACCACCGCTGACCGCCAGGCCGTCTGCAATTGCCTCAAACAGGTTACCGGTAGCATCAAAGGACTCAACCCTAACCTTGCAGCTGGGCTTCCCGGCAAGTGTGGAGTTAGCGTTCCCTACAAGATCAGCACCTCCACCAACTGCGCCAGTTCTGCAGCAAACTGTTTTGCACAATCAATTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006649 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010556 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0019222 GO:0030054 GO:0030154 GO:0030312 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0042221 GO:0042335 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0060255 GO:0061024 GO:0065007 GO:0071702 GO:0071840 GO:0071944 GO:0090627 GO:0097708 GO:0098791 GO:1901700 GO:1901957

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

126

Amino Acids

12.58

Weight (kDa)

9.15

Isoelectric Point (pI)

27.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	20 - 106	2.4e-06	Probable lipid transfer
Tryp_alpha_amyl	PF00234	29 - 113	1.8e-14	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33355 AT4G33355
fragaria_vesca	FvH4_6g09970 FvH4_6g09980
malus_domestica	MD04G1173600.v1.1 MD04G1173800.v1.1 MD12G1187100.v1.1 MD12G1187200.v1.1 MD12G1187500.v1.1
prunus_persica	Prupe.6G292600_v2.0.a1 Prupe.6G292600_v2.0.a1 Prupe.6G292600_v2.0.a1 Prupe.6G292800_v2.0.a1
pyrus_communis	pycom04g15340 pycom12g17540 pycom12g17550
rosa_chinensis	RchiOBHm_Chr3g0460591 RchiOBHm_Chr3g0460641 RchiOBHm_Chr3g0460651 RchiOBHm_Chr7g0211001
rosa_laevigata	RLG00000003030 RLG00000024990 RLG00000024991
rosa_multiflora	Rmu_co8436807.1_g000001 Rmu_sc0001256.1_g000005 Rmu_sc0001256.1_g000008 Rmu_sc0001256.1_g000009 Rmu_sc0003701.1_g000008 Rmu_sc0011069.1_g000012
rosa_roxburghii	Rroxscaffold_3G00248180 Rroxscaffold_6G00419330 Rroxscaffold_6G00419340
rosa_rugosa	Rorug03G0044200 Rorug03G0044300 Rorug03G0044400 Rorug03G0044500 Rorug07G0123800
rosa_samantha	Rh3AG102300 Rh3AG102400 Rh3BG105900 Rh3BG106000 Rh3BG106100 Rh3CG107900 Rh3CG108000 Rh3DG107400 Rh3DG107600 Rh7AG255400 Rh7BG249900 Rh7CG272000
rosa_wichuraiana	Rw0G010020 Rw3G008690 Rw3G008710 Rw7G021850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	87, 138, 153, 201, 208
AclI	AACGTT	1 cut(s)	105
AcoI	YGGCCR	2 cut(s)	88, 189
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgeI	ACCGGT	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	210
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AloI	GAACNNNNNNTCC	2 cut(s)	291, 323
AluBI	AGCT	3 cut(s)	9, 25, 278
AluI	AGCT	3 cut(s)	9, 25, 278
AoxI	GGCC	3 cut(s)	88, 189, 213
ApeKI	GCWGC	3 cut(s)	159, 275, 350
AsiGI	ACCGGT	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	341
AsuC2I	CCSGG	1 cut(s)	288
AsuNHI	GCTAGC	1 cut(s)	5
BalI	TGGCCA	1 cut(s)	191
BbvI	GCAGC	3 cut(s)	146, 287, 362
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	212
BcnI	CCSGG	1 cut(s)	288
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	348
BisI	GCNGC	6 cut(s)	88, 139, 153, 160, 276, 351
BlsI	GCNGC	6 cut(s)	89, 140, 154, 161, 277, 352
Bme1390I	CCNGG	2 cut(s)	212, 288
BmrFI	CCNGG	2 cut(s)	212, 288
BmsI	GCATC	1 cut(s)	258
BmtI	GCTAGC	1 cut(s)	9
BpuMI	CCSGG	1 cut(s)	288
BsaAI	YACGTR	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	242
BsaXI	ACNNNNNCTCC	2 cut(s)	291, 321
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseNI	ACTGG	1 cut(s)	342
BseXI	GCAGC	3 cut(s)	146, 287, 362
BseYI	CCCAGC	1 cut(s)	278
BshFI	GGCC	3 cut(s)	90, 191, 215
BshTI	ACCGGT	1 cut(s)	242
BsiSI	CCGG	2 cut(s)	243, 288
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	3 cut(s)	90, 191, 215
Bsp143I	GATC	1 cut(s)	318
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	5 cut(s)	87, 138, 153, 201, 208
BspANI	GGCC	3 cut(s)	90, 191, 215
BspHI	TCATGA	1 cut(s)	377
BspMAI	CTGCAG	1 cut(s)	352
BspOI	GCTAGC	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	342
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	359
Bst6I	CTCTTC	1 cut(s)	125
BstBAI	YACGTR	1 cut(s)	127
BstC8I	GCNNGC	3 cut(s)	7, 100, 157
BstDSI	CCRYGG	1 cut(s)	186
BstEII	GGTNACC	1 cut(s)	238
BstENI	CCTNNNNNAGG	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNI	CCWGG	1 cut(s)	212
BstNSI	RCATGY	1 cut(s)	87
BstPI	GGTNACC	1 cut(s)	238
BstSCI	CCNGG	2 cut(s)	210, 286
BstSFI	CTRYAG	1 cut(s)	348
BstV1I	GCAGC	3 cut(s)	146, 287, 362
BsuRI	GGCC	3 cut(s)	90, 191, 215
BtgI	CCRYGG	1 cut(s)	186
Cac8I	GCNNGC	3 cut(s)	7, 100, 157
CciI	TCATGA	1 cut(s)	377
CfoI	GCGC	1 cut(s)	341
Cfr10I	RCCGGY	1 cut(s)	242
CspAI	ACCGGT	1 cut(s)	242
CviAII	CATG	3 cut(s)	84, 187, 378
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
EaeI	YGGCCR	2 cut(s)	88, 189
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	186
Eco91I	GGTNACC	1 cut(s)	238
EcoNI	CCTNNNNNAGG	1 cut(s)	233
EcoO65I	GGTNACC	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	3 cut(s)	87, 190, 381
FaiI	YATR	5 cut(s)	20, 68, 85, 188, 379
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	3 cut(s)	83, 186, 377
Fnu4HI	GCNGC	6 cut(s)	88, 139, 153, 160, 276, 351
Fsp4HI	GCNGC	6 cut(s)	88, 139, 153, 160, 276, 351
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	6 cut(s)	88, 139, 153, 160, 276, 351
GsaI	CCCAGC	1 cut(s)	282
HaeIII	GGCC	3 cut(s)	90, 191, 215
HapII	CCGG	2 cut(s)	243, 288
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	3 cut(s)	87, 190, 381
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	1 cut(s)	258
HpaII	CCGG	2 cut(s)	243, 288
Hpy188III	TCNNGA	1 cut(s)	378
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4IV	ACGT	2 cut(s)	105, 126
HpyCH4V	TGCA	7 cut(s)	110, 117, 162, 222, 275, 350, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpySE526I	ACGT	2 cut(s)	105, 126
Hsp92II	CATG	3 cut(s)	87, 190, 381
HspAI	GCGC	1 cut(s)	339
Kzo9I	GATC	1 cut(s)	318
LpnPI	CCDG	8 cut(s)	162, 197, 221, 224, 256, 264, 301, 355
Lsp1109I	GCAGC	3 cut(s)	146, 287, 362
LweI	GCATC	1 cut(s)	258
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	2 cut(s)	105, 126
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	1 cut(s)	142
MfeI	CAATTG	1 cut(s)	223
MlsI	TGGCCA	1 cut(s)	191
MluCI	AATT	2 cut(s)	223, 372
MluNI	TGGCCA	1 cut(s)	191
MlyI	GAGTC	1 cut(s)	252
MnlI	CCTC	2 cut(s)	239, 337
Mox20I	TGGCCA	1 cut(s)	191
MscI	TGGCCA	1 cut(s)	191
MseI	TTAA	1 cut(s)	180
Msp20I	TGGCCA	1 cut(s)	191
MspA1I	CMGCKG	2 cut(s)	203, 278
MspI	CCGG	2 cut(s)	243, 288
MspR9I	CCNGG	2 cut(s)	212, 288
MunI	CAATTG	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	347
NciI	CCSGG	1 cut(s)	288
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	1 cut(s)	318
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	3 cut(s)	87, 190, 381
NspI	RCATGY	1 cut(s)	87
PagI	TCATGA	1 cut(s)	377
PinAI	ACCGGT	1 cut(s)	242
PkrI	GCNGC	6 cut(s)	89, 140, 154, 161, 277, 352
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
Ppu21I	YACGTR	1 cut(s)	127
Psp1406I	AACGTT	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	210
PspEI	GGTNACC	1 cut(s)	238
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	210
PstI	CTGCAG	1 cut(s)	352
PvuII	CAGCTG	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	6 cut(s)	88, 139, 153, 160, 276, 351
Sau3AI	GATC	1 cut(s)	318
SchI	GAGTC	1 cut(s)	252
ScrFI	CCNGG	2 cut(s)	212, 288
SfaNI	GCATC	1 cut(s)	258
SfcI	CTRYAG	1 cut(s)	348
Sse9I	AATT	2 cut(s)	223, 372
SsiI	CCGC	5 cut(s)	87, 138, 153, 201, 208
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	2 cut(s)	210, 286
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	359
TaiI	ACGT	2 cut(s)	108, 129
TasI	AATT	2 cut(s)	223, 372
TauI	GCSGC	3 cut(s)	90, 141, 155
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TseI	GCWGC	3 cut(s)	159, 275, 350
TspDTI	ATGAA	2 cut(s)	35, 366
TspGWI	ACGGA	1 cut(s)	180
XagI	CCTNNNNNAGG	1 cut(s)	233
XceI	RCATGY	1 cut(s)	87
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.