Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001353

Physical Location & Seq

Genomic Coordinates Forward (+)

26940845 .. 26942242

Gene Structure 1398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G292800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCTTACTCTGCCATGACTAAGCTTGCTTTGGTGGTGGCCTTGTGCATGGTTGTGAGCGTGCCCATTGCTCAAGCCATAACATGTGGCCAATTGTTCAGCAACCTTGCACCATGCATACCCTACGTGAGAGGCGGTGGAGCTGTGCCTCCAGCTTGCTGCAACGGCATTAGGAACGTCAACAACTTGGCAAAGACCACCCCTGACCGCCAGGCCGCTTGCAACTGCCTGAAACAGCTTTCCGCCAGCATCCCCGGAGTCAACCCTAACAATGCCGCAGCGCTTCCCGGCAAGTGTGGAGTTAGTATTCCTTACAAGATTAGCGCCTCCACCAACTGCAAAACCGTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006649 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010556 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0019222 GO:0030054 GO:0030154 GO:0030312 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0042221 GO:0042335 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0060255 GO:0061024 GO:0065007 GO:0071702 GO:0071840 GO:0071944 GO:0090627 GO:0097708 GO:0098791 GO:1901700 GO:1901957

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

118

Amino Acids

11.95

Weight (kDa)

9.34

Isoelectric Point (pI)

28.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33355 AT4G33355
fragaria_vesca	FvH4_6g09970 FvH4_6g09980
malus_domestica	MD04G1173600.v1.1 MD04G1173800.v1.1 MD12G1187100.v1.1 MD12G1187200.v1.1 MD12G1187500.v1.1
prunus_persica	Prupe.6G292600_v2.0.a1 Prupe.6G292600_v2.0.a1 Prupe.6G292600_v2.0.a1 Prupe.6G292800_v2.0.a1
pyrus_communis	pycom04g15340 pycom12g17540 pycom12g17550
rosa_chinensis	RchiOBHm_Chr3g0460591 RchiOBHm_Chr3g0460641 RchiOBHm_Chr3g0460651 RchiOBHm_Chr7g0211001
rosa_laevigata	RLG00000003030 RLG00000024990 RLG00000024991
rosa_multiflora	Rmu_co8436807.1_g000001 Rmu_sc0001256.1_g000005 Rmu_sc0001256.1_g000008 Rmu_sc0001256.1_g000009 Rmu_sc0003701.1_g000008 Rmu_sc0011069.1_g000012
rosa_roxburghii	Rroxscaffold_3G00248180 Rroxscaffold_6G00419330 Rroxscaffold_6G00419340
rosa_rugosa	Rorug03G0044200 Rorug03G0044300 Rorug03G0044400 Rorug03G0044500 Rorug07G0123800
rosa_samantha	Rh3AG102300 Rh3AG102400 Rh3BG105900 Rh3BG106000 Rh3BG106100 Rh3CG107900 Rh3CG108000 Rh3DG107400 Rh3DG107600 Rh7AG255400 Rh7BG249900 Rh7CG272000
rosa_wichuraiana	Rw0G010020 Rw3G008690 Rw3G008710 Rw7G021850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	135, 208, 216, 243, 276
AcoI	YGGCCR	1 cut(s)	88
AfeI	AGCGCT	1 cut(s)	282
AflIII	ACRYGT	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	4 cut(s)	25, 143, 155, 238
AluI	AGCT	4 cut(s)	25, 143, 155, 238
Aor51HI	AGCGCT	1 cut(s)	282
AoxI	GGCC	3 cut(s)	39, 88, 213
ApeKI	GCWGC	2 cut(s)	159, 278
AspLEI	GCGC	2 cut(s)	283, 326
AsuC2I	CCSGG	2 cut(s)	255, 288
BaeGI	GKGCMC	1 cut(s)	66
BalI	TGGCCA	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	146, 290
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	212
BcnI	CCSGG	2 cut(s)	255, 288
BfoI	RGCGCY	2 cut(s)	284, 327
BisI	GCNGC	4 cut(s)	160, 216, 276, 279
BlsI	GCNGC	4 cut(s)	161, 217, 277, 280
Bme1390I	CCNGG	3 cut(s)	212, 255, 288
BmrFI	CCNGG	3 cut(s)	212, 255, 288
BmsI	GCATC	1 cut(s)	258
BpmI	CTGGAG	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	57
BpuMI	CCSGG	2 cut(s)	255, 288
BsaAI	YACGTR	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	1 cut(s)	249
BseMI	GCAATG	1 cut(s)	66
BseSI	GKGCMC	1 cut(s)	66
BseXI	GCAGC	2 cut(s)	146, 290
BshFI	GGCC	3 cut(s)	41, 90, 215
BsiSI	CCGG	2 cut(s)	255, 288
BsnI	GGCC	3 cut(s)	41, 90, 215
Bsp1286I	GDGCHC	1 cut(s)	66
BspACI	CCGC	5 cut(s)	135, 208, 216, 243, 276
BspANI	GGCC	3 cut(s)	41, 90, 215
BsrDI	GCAATG	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	346
BstBAI	YACGTR	1 cut(s)	127
BstC8I	GCNNGC	5 cut(s)	27, 62, 157, 220, 247
BstDEI	CTNAG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	249
BstH2I	RGCGCY	2 cut(s)	284, 327
BstHHI	GCGC	2 cut(s)	283, 326
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 165
BstNI	CCWGG	1 cut(s)	212
BstNSI	RCATGY	1 cut(s)	87
BstSCI	CCNGG	3 cut(s)	210, 253, 286
BstSLI	GKGCMC	1 cut(s)	66
BstV1I	GCAGC	2 cut(s)	146, 290
BsuRI	GGCC	3 cut(s)	41, 90, 215
BtsCI	GGATG	1 cut(s)	249
Cac8I	GCNNGC	5 cut(s)	27, 62, 157, 220, 247
CfoI	GCGC	2 cut(s)	283, 326
CviAII	CATG	4 cut(s)	16, 49, 84, 114
CviJI	RGCY	9 cut(s)	5, 25, 41, 77, 90, 143, 155, 215, 238
CviKI_1	RGCY	9 cut(s)	5, 25, 41, 77, 90, 143, 155, 215, 238
DdeI	CTNAG	1 cut(s)	21
EaeI	YGGCCR	1 cut(s)	88
EciI	GGCGGA	1 cut(s)	232
Eco47III	AGCGCT	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	210
EcoT22I	ATGCAT	1 cut(s)	119
FaeI	CATG	4 cut(s)	19, 52, 87, 117
FaiI	YATR	6 cut(s)	17, 50, 80, 85, 115, 119
FatI	CATG	4 cut(s)	15, 48, 83, 113
Fnu4HI	GCNGC	4 cut(s)	160, 216, 276, 279
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	4 cut(s)	160, 216, 276, 279
GlaI	GCGC	2 cut(s)	282, 325
GluI	GCNGC	4 cut(s)	160, 216, 276, 279
GsuI	CTGGAG	1 cut(s)	135
HaeII	RGCGCY	2 cut(s)	284, 327
HaeIII	GGCC	3 cut(s)	41, 90, 215
HapII	CCGG	2 cut(s)	255, 288
HhaI	GCGC	2 cut(s)	283, 326
Hin1II	CATG	4 cut(s)	19, 52, 87, 117
Hin6I	GCGC	2 cut(s)	281, 324
HinP1I	GCGC	2 cut(s)	281, 324
HincII	GTYRAC	2 cut(s)	181, 262
HindII	GTYRAC	2 cut(s)	181, 262
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	1 cut(s)	258
HpaII	CCGG	2 cut(s)	255, 288
Hpy166II	GTNNAC	2 cut(s)	181, 262
Hpy8I	GTNNAC	2 cut(s)	181, 262
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	2 cut(s)	126, 177
HpyCH4V	TGCA	6 cut(s)	48, 110, 117, 162, 222, 339
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 165
HpyF3I	CTNAG	1 cut(s)	21
HpySE526I	ACGT	2 cut(s)	126, 177
Hsp92II	CATG	4 cut(s)	19, 52, 87, 117
HspAI	GCGC	2 cut(s)	281, 324
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	8 cut(s)	165, 197, 216, 224, 242, 259, 268, 301
Lsp1109I	GCAGC	2 cut(s)	146, 290
LweI	GCATC	1 cut(s)	258
MaeII	ACGT	2 cut(s)	126, 177
MfeI	CAATTG	1 cut(s)	92
MhlI	GDGCHC	1 cut(s)	66
MlsI	TGGCCA	1 cut(s)	90
MluCI	AATT	1 cut(s)	92
MluNI	TGGCCA	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	267
MnlI	CCTC	3 cut(s)	125, 159, 337
Mox20I	TGGCCA	1 cut(s)	90
Mph1103I	ATGCAT	1 cut(s)	119
MscI	TGGCCA	1 cut(s)	90
MslI	CAYNNNNRTG	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	90
MspI	CCGG	2 cut(s)	255, 288
MspR9I	CCNGG	3 cut(s)	212, 255, 288
MunI	CAATTG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	2 cut(s)	11, 165
NciI	CCSGG	2 cut(s)	255, 288
NlaIII	CATG	4 cut(s)	19, 52, 87, 117
NsiI	ATGCAT	1 cut(s)	119
NspI	RCATGY	1 cut(s)	87
PciI	ACATGT	1 cut(s)	83
PkrI	GCNGC	4 cut(s)	161, 217, 277, 280
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Ppu21I	YACGTR	1 cut(s)	127
PscI	ACATGT	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
RseI	CAYNNNNRTG	1 cut(s)	53
SatI	GCNGC	4 cut(s)	160, 216, 276, 279
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	3 cut(s)	212, 255, 288
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	7 cut(s)	27, 108, 129, 145, 157, 180, 240
SfaNI	GCATC	1 cut(s)	258
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	1 cut(s)	92
SsiI	CCGC	5 cut(s)	135, 208, 216, 243, 276
StyD4I	CCNGG	3 cut(s)	210, 253, 286
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	2 cut(s)	129, 180
TasI	AATT	1 cut(s)	92
TauI	GCSGC	2 cut(s)	218, 278
TseI	GCWGC	2 cut(s)	159, 278
XceI	RCATGY	1 cut(s)	87
Zsp2I	ATGCAT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.