Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001353

Physical Location & Seq

Genomic Coordinates Forward (+)

28338965 .. 28339726

Gene Structure 762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18881

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCTAGCTCGACCCCTATGAAGCTTACTTTGGTCGCTCTCTTGTGCGTGGTGGTTACTTTGCCCCTAGCCCAAGCCATCACTTGCGGCCAAGTGGTGAGCAACGTTTCACCTTGCCTAGACTACGTGAAGAATGGCGGCGCTGTCCCTGCCGCTTGCTGCAGCGGAGTTGGAAACCTTAACGCCTTGGCCAAGACCACCCCTGACCGCCAGACCACCTGCAATTGCCTCAAACAGCTTGCCGATAGCATGAAAGGAATCAACCCTGACCTTGCAGCTGGTGTTCCCGGCAAGTGTGGAATTAACGTTCCGTTCAAGATCAGTCCCTCCACCGACTGCGCCACCGTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006649 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010556 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0019222 GO:0030054 GO:0030154 GO:0030312 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0042221 GO:0042335 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0060255 GO:0061024 GO:0065007 GO:0071702 GO:0071840 GO:0071944 GO:0090627 GO:0097708 GO:0098791 GO:1901700 GO:1901957

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

117

Amino Acids

11.84

Weight (kDa)

8.62

Isoelectric Point (pI)

28.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	19 - 105	6.9e-07	Probable lipid transfer
Tryp_alpha_amyl	PF00234	29 - 113	1.1e-14	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33355 AT4G33355
fragaria_vesca	FvH4_6g09970 FvH4_6g09980
malus_domestica	MD04G1173600.v1.1 MD04G1173800.v1.1 MD12G1187100.v1.1 MD12G1187200.v1.1 MD12G1187500.v1.1
prunus_persica	Prupe.6G292600_v2.0.a1 Prupe.6G292600_v2.0.a1 Prupe.6G292600_v2.0.a1 Prupe.6G292800_v2.0.a1
pyrus_communis	pycom04g15340 pycom12g17540 pycom12g17550
rosa_chinensis	RchiOBHm_Chr3g0460591 RchiOBHm_Chr3g0460641 RchiOBHm_Chr3g0460651 RchiOBHm_Chr7g0211001
rosa_laevigata	RLG00000003030 RLG00000024990 RLG00000024991
rosa_multiflora	Rmu_co8436807.1_g000001 Rmu_sc0001256.1_g000005 Rmu_sc0001256.1_g000008 Rmu_sc0001256.1_g000009 Rmu_sc0003701.1_g000008 Rmu_sc0011069.1_g000012
rosa_roxburghii	Rroxscaffold_3G00248180 Rroxscaffold_6G00419330 Rroxscaffold_6G00419340
rosa_rugosa	Rorug03G0044200 Rorug03G0044300 Rorug03G0044400 Rorug03G0044500 Rorug07G0123800
rosa_samantha	Rh3AG102300 Rh3AG102400 Rh3BG105900 Rh3BG106000 Rh3BG106100 Rh3CG107900 Rh3CG108000 Rh3DG107400 Rh3DG107600 Rh7AG255400 Rh7BG249900 Rh7CG272000
rosa_wichuraiana	Rw0G010020 Rw3G008690 Rw3G008710 Rw7G021850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	227
Acc36I	ACCTGC	1 cut(s)	227
AciI	CCGC	5 cut(s)	87, 138, 153, 165, 208
AclI	AACGTT	2 cut(s)	105, 306
AcoI	YGGCCR	2 cut(s)	88, 189
AgsI	TTSAA	1 cut(s)	316
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AloI	GAACNNNNNNTCC	2 cut(s)	291, 323
AluBI	AGCT	4 cut(s)	9, 25, 238, 278
AluI	AGCT	4 cut(s)	9, 25, 238, 278
AoxI	GGCC	2 cut(s)	88, 189
ApeKI	GCWGC	3 cut(s)	159, 162, 275
AspLEI	GCGC	2 cut(s)	143, 341
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	2 cut(s)	102, 109
AsuNHI	GCTAGC	1 cut(s)	5
BalI	TGGCCA	1 cut(s)	191
BbvI	GCAGC	3 cut(s)	146, 174, 287
BccI	CCATC	1 cut(s)	86
BcnI	CCSGG	1 cut(s)	288
BfaI	CTAG	3 cut(s)	6, 68, 119
BfmI	CTRYAG	1 cut(s)	160
BfoI	RGCGCY	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	227
BisI	GCNGC	6 cut(s)	88, 139, 153, 160, 163, 276
BlsI	GCNGC	6 cut(s)	89, 140, 154, 161, 164, 277
Bme1390I	CCNGG	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	288
BmtI	GCTAGC	1 cut(s)	9
BpuMI	CCSGG	1 cut(s)	288
BsaAI	YACGTR	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	186
BseXI	GCAGC	3 cut(s)	146, 174, 287
BshFI	GGCC	2 cut(s)	90, 191
BsiSI	CCGG	1 cut(s)	288
BslFI	GGGAC	2 cut(s)	131, 309
BsmFI	GGGAC	2 cut(s)	131, 309
BsnI	GGCC	2 cut(s)	90, 191
Bsp143I	GATC	1 cut(s)	318
BspACI	CCGC	5 cut(s)	87, 138, 153, 165, 208
BspANI	GGCC	2 cut(s)	90, 191
BspMAI	CTGCAG	1 cut(s)	164
BspMI	ACCTGC	1 cut(s)	227
BspOI	GCTAGC	1 cut(s)	9
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	346
BstBAI	YACGTR	1 cut(s)	127
BstC8I	GCNNGC	3 cut(s)	7, 157, 240
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	2 cut(s)	143, 341
BstKTI	GATC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	160
BstV1I	GCAGC	3 cut(s)	146, 174, 287
BsuRI	GGCC	2 cut(s)	90, 191
BveI	ACCTGC	1 cut(s)	227
Cac8I	GCNNGC	3 cut(s)	7, 157, 240
CfoI	GCGC	2 cut(s)	143, 341
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	9 cut(s)	5, 9, 25, 71, 77, 90, 191, 238, 278
CviKI_1	RGCY	9 cut(s)	5, 9, 25, 71, 77, 90, 191, 238, 278
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
EaeI	YGGCCR	2 cut(s)	88, 189
Eco130I	CCWWGG	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	1 cut(s)	253
FaiI	YATR	2 cut(s)	20, 251
FaqI	GGGAC	2 cut(s)	131, 309
FatI	CATG	1 cut(s)	249
Fnu4HI	GCNGC	6 cut(s)	88, 139, 153, 160, 163, 276
Fsp4HI	GCNGC	6 cut(s)	88, 139, 153, 160, 163, 276
FspBI	CTAG	3 cut(s)	6, 68, 119
GlaI	GCGC	2 cut(s)	142, 340
GluI	GCNGC	6 cut(s)	88, 139, 153, 160, 163, 276
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	90, 191
HapII	CCGG	1 cut(s)	288
HhaI	GCGC	2 cut(s)	143, 341
Hin1II	CATG	1 cut(s)	253
Hin6I	GCGC	2 cut(s)	141, 339
HinP1I	GCGC	2 cut(s)	141, 339
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	1 cut(s)	258
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	2 cut(s)	102, 109
Hpy188III	TCNNGA	1 cut(s)	316
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	3 cut(s)	105, 126, 306
HpyCH4V	TGCA	3 cut(s)	162, 222, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpySE526I	ACGT	3 cut(s)	105, 126, 306
Hsp92II	CATG	1 cut(s)	253
HspAI	GCGC	2 cut(s)	141, 339
Kzo9I	GATC	1 cut(s)	318
LpnPI	CCDG	7 cut(s)	162, 216, 224, 232, 264, 279, 301
Lsp1109I	GCAGC	3 cut(s)	146, 174, 287
MaeI	CTAG	3 cut(s)	6, 68, 119
MaeII	ACGT	3 cut(s)	105, 126, 306
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	1 cut(s)	142
MfeI	CAATTG	1 cut(s)	223
MlsI	TGGCCA	1 cut(s)	191
MluCI	AATT	2 cut(s)	223, 300
MluNI	TGGCCA	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	2 cut(s)	239, 337
Mox20I	TGGCCA	1 cut(s)	191
MscI	TGGCCA	1 cut(s)	191
MseI	TTAA	2 cut(s)	180, 303
Msp20I	TGGCCA	1 cut(s)	191
MspA1I	CMGCKG	2 cut(s)	165, 278
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	288
MunI	CAATTG	1 cut(s)	223
MwoI	GCNNNNNNNGC	1 cut(s)	149
NciI	CCSGG	1 cut(s)	288
NdeII	GATC	1 cut(s)	318
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	1 cut(s)	253
PaqCI	CACCTGC	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	258
PkrI	GCNGC	6 cut(s)	89, 140, 154, 161, 164, 277
Ppu21I	YACGTR	1 cut(s)	127
Psp1406I	AACGTT	2 cut(s)	105, 306
PstI	CTGCAG	1 cut(s)	164
PvuII	CAGCTG	1 cut(s)	278
SaqAI	TTAA	2 cut(s)	180, 303
SatI	GCNGC	6 cut(s)	88, 139, 153, 160, 163, 276
Sau3AI	GATC	1 cut(s)	318
ScrFI	CCNGG	1 cut(s)	288
SfcI	CTRYAG	1 cut(s)	160
Sse9I	AATT	2 cut(s)	223, 300
SsiI	CCGC	5 cut(s)	87, 138, 153, 165, 208
SspMI	CTAG	3 cut(s)	6, 68, 119
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	3 cut(s)	108, 129, 309
TaqI	TCGA	1 cut(s)	11
TasI	AATT	2 cut(s)	223, 300
TauI	GCSGC	3 cut(s)	90, 141, 155
TfiI	GAWTC	1 cut(s)	258
Tru1I	TTAA	2 cut(s)	180, 303
Tru9I	TTAA	2 cut(s)	180, 303
TseI	GCWGC	3 cut(s)	159, 162, 275
TspDTI	ATGAA	2 cut(s)	35, 266
TspGWI	ACGGA	1 cut(s)	300
XspI	CTAG	3 cut(s)	6, 68, 119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.