Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001353

Physical Location & Seq

Genomic Coordinates Reverse (-)

41471492 .. 41472241

Gene Structure 750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00248180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCTAGCTCGACCGCTATGAAGCTTACTTTTGTCGCTCTCTTGTGCATGGTGGTTGCTTTGCCCCTAGCCCAAGCCATCACATGCGGCCAAGTGACGAGCAACGTTTCACCTTGCCTAAACTACGTGAAGAATGGCGGCGCTGTCCCTGCCGCTTGCTGCAGCGGAGTTGGAAACCTTAATGCCATGGCCAAGACCACCCCTGACCGCCAGACCACCTGCAATTGCCTCAAACAGCTTGCCGGTAGCATGAAAGGAATCAACCCTGACCTTGCAGCTGGTGTTCCCGGCAAGTGTGGAGTTAACGTTCCGTTCAAGATCGGCCCCTCCACTGACTGCGCCACCGTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006649 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010556 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0019222 GO:0030054 GO:0030154 GO:0030312 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0042221 GO:0042335 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0060255 GO:0061024 GO:0065007 GO:0071702 GO:0071840 GO:0071944 GO:0090627 GO:0097708 GO:0098791 GO:1901700 GO:1901957

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

117

Amino Acids

11.76

Weight (kDa)

8.95

Isoelectric Point (pI)

30.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	21 - 105	1.4e-07	Probable lipid transfer
Tryp_alpha_amyl	PF00234	29 - 113	9.6e-15	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33355 AT4G33355
fragaria_vesca	FvH4_6g09970 FvH4_6g09980
malus_domestica	MD04G1173600.v1.1 MD04G1173800.v1.1 MD12G1187100.v1.1 MD12G1187200.v1.1 MD12G1187500.v1.1
prunus_persica	Prupe.6G292600_v2.0.a1 Prupe.6G292600_v2.0.a1 Prupe.6G292600_v2.0.a1 Prupe.6G292800_v2.0.a1
pyrus_communis	pycom04g15340 pycom12g17540 pycom12g17550
rosa_chinensis	RchiOBHm_Chr3g0460591 RchiOBHm_Chr3g0460641 RchiOBHm_Chr3g0460651 RchiOBHm_Chr7g0211001
rosa_laevigata	RLG00000003030 RLG00000024990 RLG00000024991
rosa_multiflora	Rmu_co8436807.1_g000001 Rmu_sc0001256.1_g000005 Rmu_sc0001256.1_g000008 Rmu_sc0001256.1_g000009 Rmu_sc0003701.1_g000008 Rmu_sc0011069.1_g000012
rosa_roxburghii	Rroxscaffold_3G00248180 Rroxscaffold_6G00419330 Rroxscaffold_6G00419340
rosa_rugosa	Rorug03G0044200 Rorug03G0044300 Rorug03G0044400 Rorug03G0044500 Rorug07G0123800
rosa_samantha	Rh3AG102300 Rh3AG102400 Rh3BG105900 Rh3BG106000 Rh3BG106100 Rh3CG107900 Rh3CG108000 Rh3DG107400 Rh3DG107600 Rh7AG255400 Rh7BG249900 Rh7CG272000
rosa_wichuraiana	Rw0G010020 Rw3G008690 Rw3G008710 Rw7G021850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	227
Acc36I	ACCTGC	1 cut(s)	227
AciI	CCGC	6 cut(s)	15, 87, 138, 153, 165, 208
AclI	AACGTT	2 cut(s)	105, 306
AcoI	YGGCCR	2 cut(s)	88, 189
AgsI	TTSAA	1 cut(s)	316
AloI	GAACNNNNNNTCC	2 cut(s)	291, 323
AluBI	AGCT	4 cut(s)	9, 25, 238, 278
AluI	AGCT	4 cut(s)	9, 25, 238, 278
AoxI	GGCC	3 cut(s)	88, 189, 322
ApeKI	GCWGC	3 cut(s)	159, 162, 275
AspLEI	GCGC	2 cut(s)	143, 341
AspS9I	GGNCC	1 cut(s)	323
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	102
AsuNHI	GCTAGC	1 cut(s)	5
BalI	TGGCCA	1 cut(s)	191
BbvI	GCAGC	3 cut(s)	146, 174, 287
BccI	CCATC	1 cut(s)	86
BcnI	CCSGG	1 cut(s)	288
BfaI	CTAG	2 cut(s)	6, 68
BfmI	CTRYAG	1 cut(s)	160
BfoI	RGCGCY	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	227
BisI	GCNGC	6 cut(s)	88, 139, 153, 160, 163, 276
BlsI	GCNGC	6 cut(s)	89, 140, 154, 161, 164, 277
Bme1390I	CCNGG	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	1 cut(s)	325
BmrFI	CCNGG	1 cut(s)	288
BmtI	GCTAGC	1 cut(s)	9
BpuMI	CCSGG	1 cut(s)	288
BsaAI	YACGTR	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	291, 321
Bse118I	RCCGGY	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	186
BseXI	GCAGC	3 cut(s)	146, 174, 287
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	3 cut(s)	90, 191, 324
BsiEI	CGRYCG	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	243, 288
BslFI	GGGAC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	3 cut(s)	90, 191, 324
Bsp143I	GATC	1 cut(s)	318
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	6 cut(s)	15, 87, 138, 153, 165, 208
BspANI	GGCC	3 cut(s)	90, 191, 324
BspLI	GGNNCC	1 cut(s)	325
BspMAI	CTGCAG	1 cut(s)	164
BspMI	ACCTGC	1 cut(s)	227
BspOI	GCTAGC	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	242
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	346
BstBAI	YACGTR	1 cut(s)	127
BstC8I	GCNNGC	3 cut(s)	7, 157, 240
BstDSI	CCRYGG	1 cut(s)	186
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	2 cut(s)	143, 341
BstKTI	GATC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	318
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNSI	RCATGY	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	160
BstV1I	GCAGC	3 cut(s)	146, 174, 287
BsuRI	GGCC	3 cut(s)	90, 191, 324
BtgI	CCRYGG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	330
BveI	ACCTGC	1 cut(s)	227
Cac8I	GCNNGC	3 cut(s)	7, 157, 240
CfoI	GCGC	2 cut(s)	143, 341
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	323
CviAII	CATG	4 cut(s)	49, 84, 187, 250
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
EaeI	YGGCCR	2 cut(s)	88, 189
Eco130I	CCWWGG	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	4 cut(s)	52, 87, 190, 253
FaiI	YATR	5 cut(s)	20, 50, 85, 188, 251
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	4 cut(s)	48, 83, 186, 249
Fnu4HI	GCNGC	6 cut(s)	88, 139, 153, 160, 163, 276
Fsp4HI	GCNGC	6 cut(s)	88, 139, 153, 160, 163, 276
FspBI	CTAG	2 cut(s)	6, 68
GlaI	GCGC	2 cut(s)	142, 340
GluI	GCNGC	6 cut(s)	88, 139, 153, 160, 163, 276
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	3 cut(s)	90, 191, 324
HapII	CCGG	2 cut(s)	243, 288
HhaI	GCGC	2 cut(s)	143, 341
Hin1II	CATG	4 cut(s)	52, 87, 190, 253
Hin6I	GCGC	2 cut(s)	141, 339
HinP1I	GCGC	2 cut(s)	141, 339
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	1 cut(s)	258
HpaI	GTTAAC	1 cut(s)	304
HpaII	CCGG	2 cut(s)	243, 288
HphI	GGTGA	1 cut(s)	102
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188III	TCNNGA	1 cut(s)	316
Hpy8I	GTNNAC	1 cut(s)	304
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	3 cut(s)	105, 126, 306
HpyCH4V	TGCA	4 cut(s)	48, 162, 222, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpySE526I	ACGT	3 cut(s)	105, 126, 306
Hsp92II	CATG	4 cut(s)	52, 87, 190, 253
HspAI	GCGC	2 cut(s)	141, 339
KspAI	GTTAAC	1 cut(s)	304
Kzo9I	GATC	1 cut(s)	318
LpnPI	CCDG	8 cut(s)	162, 216, 224, 232, 256, 264, 279, 301
Lsp1109I	GCAGC	3 cut(s)	146, 174, 287
MaeI	CTAG	2 cut(s)	6, 68
MaeII	ACGT	3 cut(s)	105, 126, 306
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	1 cut(s)	142
MfeI	CAATTG	1 cut(s)	223
MlsI	TGGCCA	1 cut(s)	191
MluCI	AATT	1 cut(s)	223
MluNI	TGGCCA	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	2 cut(s)	239, 337
Mox20I	TGGCCA	1 cut(s)	191
MscI	TGGCCA	1 cut(s)	191
MseI	TTAA	2 cut(s)	180, 303
Msp20I	TGGCCA	1 cut(s)	191
MspA1I	CMGCKG	2 cut(s)	165, 278
MspI	CCGG	2 cut(s)	243, 288
MspR9I	CCNGG	1 cut(s)	288
MunI	CAATTG	1 cut(s)	223
MwoI	GCNNNNNNNGC	1 cut(s)	149
NciI	CCSGG	1 cut(s)	288
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	1 cut(s)	318
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	4 cut(s)	52, 87, 190, 253
NlaIV	GGNNCC	1 cut(s)	325
NmuCI	GTSAC	1 cut(s)	94
NspI	RCATGY	1 cut(s)	87
PaqCI	CACCTGC	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	258
PkrI	GCNGC	6 cut(s)	89, 140, 154, 161, 164, 277
Ppu21I	YACGTR	1 cut(s)	127
Psp1406I	AACGTT	2 cut(s)	105, 306
PspN4I	GGNNCC	1 cut(s)	325
PspPI	GGNCC	1 cut(s)	323
PstI	CTGCAG	1 cut(s)	164
PvuII	CAGCTG	1 cut(s)	278
SaqAI	TTAA	2 cut(s)	180, 303
SatI	GCNGC	6 cut(s)	88, 139, 153, 160, 163, 276
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	288
SfcI	CTRYAG	1 cut(s)	160
Sse9I	AATT	1 cut(s)	223
SsiI	CCGC	6 cut(s)	15, 87, 138, 153, 165, 208
SspMI	CTAG	2 cut(s)	6, 68
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	3 cut(s)	108, 129, 309
TaqI	TCGA	1 cut(s)	11
TasI	AATT	1 cut(s)	223
TauI	GCSGC	3 cut(s)	90, 141, 155
TfiI	GAWTC	1 cut(s)	258
Tru1I	TTAA	2 cut(s)	180, 303
Tru9I	TTAA	2 cut(s)	180, 303
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	3 cut(s)	159, 162, 275
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	2 cut(s)	35, 266
TspGWI	ACGGA	1 cut(s)	300
TspRI	CASTG	1 cut(s)	337
XceI	RCATGY	1 cut(s)	87
XspI	CTAG	2 cut(s)	6, 68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.