Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001353

Physical Location & Seq

Genomic Coordinates Forward (+)

9638298 .. 9639956

Gene Structure 1659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0123800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1659 bp

ATGTTGTTTCAGTTCCAATTGCTTCACCTGGACCTGTCCAAGGTTTACCAGTCTTTATCAAGAACCAAACAATTGCATGCTTTGATTATCAAGACCCATCTTTCCCATGACCCATTTTATGCAACTAGAATAGTTAGATTCTATGCAGTCAATGGTGACCTTCACTCTGCACGTAAGGTGTTCGATGAAAGTCCCAGCCGAAGTGTTTATCTTTGGAATTCCATTATTCGAGCCCACGCTCAAGCTCACAAATTTGACCATGCATTTTCTCTGTTTAATAGGATGGTTAGAAGTGAAACCAAACCTGATAACTTCACTTATGCTTGTCTTATACGTGCCTGCTCTGACAACTTTGATTTAGAAGGACTGAGACTTATGCATTGTGGAGTTACAGTTTCTGGGTTGGGACTGGACTCAATTTGTAGCAGTGCACTTGTTACTGCTTATTCAAAACTGGGCCTTGTTGATGAAGCAAGTAGGGTGTTTCATGGGACACCGCAGCTGGACTTGGTAATGTGGAATTCTATGATTTCGGGTTATGGAAATTTCGGGTTTTGGGATAAAGGGCTAGAATTGTTTAGTATGATGAGATGCATGAAGGTAGTGCCTGATGGATATACATTTGTCGGGTTGCTTTCGGGTTTAAAAGATTCGAGCTTGATAAGTGTTGGCCAAGGAATACATGGTATTTGTTTGAAAAGTAATTTGGATTCTAATGATCATGTATGTAGTGTACTTGTGAGCATGTATTCAAGATGCAGGTGTATGGACTCTGCACATAAAGTTTTTAGTGGTTTGTTTGAGCCAGATTTAGTTACTTGGTCTTCTTTGATAACTGGGTATTCTCAGTCTGGAGATTATGAGAAGGCATTGTTCTTCTTCAAGTGTTTGAACATGGAAGGCAAGAAGGCAGATCCTATTTTGATTGCCAGTGTGTTGGCTGCTGCTTCTCAGATAGCAAATGTAGCGCCTGGTAGTGAGATACATGCTTATGTTCTTCGACGTGGACTTGAATCAGATGTCATGATTTCCTCTGCTCTCATAGCCATGTATTCAAAGTGTGGTTTCATGGGGATAGGGACTCGTGTTTTTAAGATCATGCCAGAGAAGAATATTGTTTCATACAATTCATTAATATTGGGTCTTGGTTTGCATGGACTTGCCGCTGAGGCGTTTAGAATGTTTAATGAGATACTGAGAAACGGATTAGTACCTGATGAATCTACTTTCTCTGCTCTCCTTTGTGCATGCTGTCATTCTGGCCTAGTCAAAGATGGCCGAGAAATTTTCAGAAAAATGAGAAAAGAGTTTGGCATTGAAGCTAGAGCAGAGCATTATGTTCATCTGGTGAAGCTTCTTGGGTTGGAGGGTAGGTTGGAAGAGGCTTACAATCTGATCTTGTCCTTGCCAGAACCAGTGGACAGTGGCATTTGGGGAGCACTTTTATCATGCTGTGATGCCTGTGGGGATTCTGAGCTGGCAGAAATTATAGCTCAAAAGCTCTTTGAAAGTAATTCTGAAAAAAGTGCTTACACAGTCATGCTTTCGAATATATATGCTGGTGATGGGAGGTGGGATGATTCAAAGAAGCTAAGGGATTACATTACAGAAAGACAATTGAGGAAAACGACTGGGGTTAGCTGGATTAAAGGTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006649 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010556 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0019222 GO:0030054 GO:0030154 GO:0030312 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0042221 GO:0042335 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0060255 GO:0061024 GO:0065007 GO:0071702 GO:0071840 GO:0071944 GO:0090627 GO:0097708 GO:0098791 GO:1901700 GO:1901957

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

552

Amino Acids

61.38

Weight (kDa)

7.24

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	68 - 115	6.3e-13	PPR repeat family
PPR_2	PF13041	169 - 215	6.2e-09	PPR repeat family
PPR	PF01535	171 - 199	4.5e-07	PPR repeat
PPR_2	PF13041	370 - 419	4.9e-12	PPR repeat family
E_motif	PF20431	490 - 550	6.7e-12	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33355 AT4G33355
fragaria_vesca	FvH4_6g09970 FvH4_6g09980
malus_domestica	MD04G1173600.v1.1 MD04G1173800.v1.1 MD12G1187100.v1.1 MD12G1187200.v1.1 MD12G1187500.v1.1
prunus_persica	Prupe.6G292600_v2.0.a1 Prupe.6G292600_v2.0.a1 Prupe.6G292600_v2.0.a1 Prupe.6G292800_v2.0.a1
pyrus_communis	pycom04g15340 pycom12g17540 pycom12g17550
rosa_chinensis	RchiOBHm_Chr3g0460591 RchiOBHm_Chr3g0460641 RchiOBHm_Chr3g0460651 RchiOBHm_Chr7g0211001
rosa_laevigata	RLG00000003030 RLG00000024990 RLG00000024991
rosa_multiflora	Rmu_co8436807.1_g000001 Rmu_sc0001256.1_g000005 Rmu_sc0001256.1_g000008 Rmu_sc0001256.1_g000009 Rmu_sc0003701.1_g000008 Rmu_sc0011069.1_g000012
rosa_roxburghii	Rroxscaffold_3G00248180 Rroxscaffold_6G00419330 Rroxscaffold_6G00419340
rosa_rugosa	Rorug03G0044200 Rorug03G0044300 Rorug03G0044400 Rorug03G0044500 Rorug07G0123800
rosa_samantha	Rh3AG102300 Rh3AG102400 Rh3BG105900 Rh3BG106000 Rh3BG106100 Rh3CG107900 Rh3CG108000 Rh3DG107400 Rh3DG107600 Rh7AG255400 Rh7BG249900 Rh7CG272000
rosa_wichuraiana	Rw0G010020 Rw3G008690 Rw3G008710 Rw7G021850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	750
Acc36I	ACCTGC	1 cut(s)	750
AciI	CCGC	2 cut(s)	497, 1164
AclWI	GGATC	1 cut(s)	908
AcoI	YGGCCR	2 cut(s)	670, 1276
AcsI	RAATTY	5 cut(s)	217, 251, 520, 544, 1284
AfaI	GTAC	2 cut(s)	735, 1212
AfiI	CCNNNNNNNGG	1 cut(s)	40
AjiI	CACGTC	1 cut(s)	1004
AjnI	CCWGG	2 cut(s)	27, 970
AjuI	GAANNNNNNNTTGG	2 cut(s)	689, 721
Alw21I	GWGCWC	2 cut(s)	433, 1441
Alw26I	GTCTC	1 cut(s)	364
Alw44I	GTGCAC	1 cut(s)	429
AlwI	GGATC	1 cut(s)	908
AlwNI	CAGNNNCTG	1 cut(s)	398
AoxI	GGCC	4 cut(s)	457, 670, 1261, 1276
ApaLI	GTGCAC	1 cut(s)	429
ApeKI	GCWGC	3 cut(s)	499, 941, 944
ApoI	RAATTY	5 cut(s)	217, 251, 520, 544, 1284
AseI	ATTAAT	1 cut(s)	1133
AspLEI	GCGC	1 cut(s)	970
AspS9I	GGNCC	2 cut(s)	31, 457
AsuHPI	GGTGA	4 cut(s)	17, 167, 1360, 1574
AsuII	TTCGAA	1 cut(s)	1547
AvaII	GGWCC	1 cut(s)	31
BaeGI	GKGCMC	1 cut(s)	433
BalI	TGGCCA	1 cut(s)	672
BanII	GRGCYC	1 cut(s)	235
BauI	CACGAG	1 cut(s)	1083
BbsI	GAAGAC	1 cut(s)	816
Bbv12I	GWGCWC	2 cut(s)	433, 1441
BbvCI	CCTCAGC	1 cut(s)	1167
BbvI	GCAGC	3 cut(s)	511, 928, 931
BccI	CCATC	5 cut(s)	105, 277, 605, 1268, 1559
BciT130I	CCWGG	2 cut(s)	29, 972
BclI	TGATCA	1 cut(s)	718
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	4 cut(s)	126, 569, 1265, 1323
BfoI	RGCGCY	1 cut(s)	971
BfuAI	ACCTGC	1 cut(s)	750
BglI	GCCNNNNNGGC	1 cut(s)	1169
BisI	GCNGC	4 cut(s)	500, 942, 945, 1164
BlsI	GCNGC	4 cut(s)	501, 943, 946, 1165
Bme1390I	CCNGG	2 cut(s)	29, 972
Bme18I	GGWCC	1 cut(s)	31
BmgBI	CACGTC	1 cut(s)	1004
BmgT120I	GGNCC	2 cut(s)	31, 457
BmrFI	CCNGG	2 cut(s)	29, 972
BmrI	ACTGGG	3 cut(s)	464, 846, 1641
BmsI	GCATC	3 cut(s)	581, 746, 1447
BmuI	ACTGGG	3 cut(s)	464, 846, 1641
BpiI	GAAGAC	1 cut(s)	816
BpmI	CTGGAG	1 cut(s)	873
Bpu10I	CCTNAGC	2 cut(s)	1167, 1592
Bpu14I	TTCGAA	1 cut(s)	1547
BpuEI	CTTGAG	1 cut(s)	225
BsaAI	YACGTR	2 cut(s)	173, 335
BsaJI	CCNNGG	2 cut(s)	39, 673
BsaXI	ACNNNNNCTCC	4 cut(s)	378, 408, 1358, 1388
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	7 cut(s)	49, 414, 459, 841, 930, 1415, 1636
BseBI	CCWGG	2 cut(s)	29, 972
BseDI	CCNNGG	2 cut(s)	39, 673
BseGI	GGATG	2 cut(s)	288, 1582
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	6 cut(s)	359, 860, 965, 1158, 1187, 1464
BseNI	ACTGG	7 cut(s)	49, 414, 459, 841, 930, 1415, 1636
BseSI	GKGCMC	1 cut(s)	433
BseXI	GCAGC	3 cut(s)	511, 928, 931
BseYI	CCCAGC	1 cut(s)	194
BsgI	GTGCAG	2 cut(s)	153, 759
BshFI	GGCC	4 cut(s)	459, 672, 1263, 1278
BsiHKAI	GWGCWC	2 cut(s)	433, 1441
BslFI	GGGAC	4 cut(s)	177, 420, 505, 1093
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	364
BsmFI	GGGAC	4 cut(s)	177, 420, 505, 1093
BsnI	GGCC	4 cut(s)	459, 672, 1263, 1278
Bsp119I	TTCGAA	1 cut(s)	1547
Bsp1286I	GDGCHC	3 cut(s)	235, 433, 1441
Bsp143I	GATC	4 cut(s)	718, 913, 1095, 1395
BspACI	CCGC	2 cut(s)	497, 1164
BspANI	GGCC	4 cut(s)	459, 672, 1263, 1278
BspCNI	CTCAG	6 cut(s)	360, 859, 964, 1159, 1188, 1465
BspHI	TCATGA	1 cut(s)	1023
BspMI	ACCTGC	1 cut(s)	750
BspPI	GGATC	1 cut(s)	908
BspT104I	TTCGAA	1 cut(s)	1547
BsrI	ACTGG	7 cut(s)	49, 414, 459, 841, 930, 1415, 1636
BssECI	CCNNGG	2 cut(s)	39, 673
BssMI	GATC	4 cut(s)	718, 913, 1095, 1395
BssSI	CACGAG	1 cut(s)	1083
BssT1I	CCWWGG	2 cut(s)	39, 673
Bst2BI	CACGAG	1 cut(s)	1083
Bst2UI	CCWGG	2 cut(s)	29, 972
Bst4CI	ACNGT	3 cut(s)	394, 1424, 1537
Bst6I	CTCTTC	1 cut(s)	1374
BstBAI	YACGTR	2 cut(s)	173, 335
BstBI	TTCGAA	1 cut(s)	1547
BstC8I	GCNNGC	4 cut(s)	78, 340, 1249, 1479
BstDEI	CTNAG	7 cut(s)	368, 846, 951, 1167, 1196, 1473, 1592
BstEII	GGTNACC	1 cut(s)	155
BstENI	CCTNNNNNAGG	1 cut(s)	38
BstF5I	GGATG	2 cut(s)	288, 1582
BstH2I	RGCGCY	1 cut(s)	971
BstHHI	GCGC	1 cut(s)	970
BstKTI	GATC	4 cut(s)	721, 916, 1098, 1398
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	4 cut(s)	718, 913, 1095, 1395
BstMWI	GCNNNNNNNGC	3 cut(s)	965, 1043, 1169
BstNI	CCWGG	2 cut(s)	29, 972
BstNSI	RCATGY	4 cut(s)	80, 748, 989, 1251
BstPI	GGTNACC	1 cut(s)	155
BstSCI	CCNGG	2 cut(s)	27, 970
BstSLI	GKGCMC	1 cut(s)	433
BstV1I	GCAGC	3 cut(s)	511, 928, 931
BstV2I	GAAGAC	1 cut(s)	816
BstX2I	RGATCY	1 cut(s)	913
BstXI	CCANNNNNNTGG	1 cut(s)	937
BstYI	RGATCY	1 cut(s)	913
BsuRI	GGCC	4 cut(s)	459, 672, 1263, 1278
BtrI	CACGTC	1 cut(s)	1004
BtsCI	GGATG	2 cut(s)	288, 1582
BtsI	GCAGTG	1 cut(s)	433
BtsIMutI	CAGTG	4 cut(s)	433, 937, 1422, 1429
BveI	ACCTGC	1 cut(s)	750
Cac8I	GCNNGC	4 cut(s)	78, 340, 1249, 1479
CaiI	CAGNNNCTG	1 cut(s)	398
CciI	TCATGA	1 cut(s)	1023
CfoI	GCGC	1 cut(s)	970
Cfr13I	GGNCC	2 cut(s)	31, 457
Csp6I	GTAC	2 cut(s)	734, 1211
CviQI	GTAC	2 cut(s)	734, 1211
DdeI	CTNAG	7 cut(s)	368, 846, 951, 1167, 1196, 1473, 1592
DpnI	GATC	4 cut(s)	720, 915, 1097, 1397
DpnII	GATC	4 cut(s)	718, 913, 1095, 1395
DraI	TTTAAA	1 cut(s)	645
EaeI	YGGCCR	2 cut(s)	670, 1276
Eam1104I	CTCTTC	1 cut(s)	1374
EarI	CTCTTC	1 cut(s)	1374
Eco130I	CCWWGG	2 cut(s)	39, 673
Eco24I	GRGCYC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	31
Eco91I	GGTNACC	1 cut(s)	155
EcoNI	CCTNNNNNAGG	1 cut(s)	38
EcoO65I	GGTNACC	1 cut(s)	155
EcoRI	GAATTC	2 cut(s)	217, 520
EcoRII	CCWGG	2 cut(s)	27, 970
EcoT14I	CCWWGG	2 cut(s)	39, 673
EcoT22I	ATGCAT	3 cut(s)	265, 381, 596
EcoT38I	GRGCYC	1 cut(s)	235
ErhI	CCWWGG	2 cut(s)	39, 673
FaqI	GGGAC	4 cut(s)	177, 420, 505, 1093
FbaI	TGATCA	1 cut(s)	718
Fnu4HI	GCNGC	4 cut(s)	500, 942, 945, 1164
FokI	GGATG	2 cut(s)	295, 1589
FriOI	GRGCYC	1 cut(s)	235
Fsp4HI	GCNGC	4 cut(s)	500, 942, 945, 1164
FspBI	CTAG	4 cut(s)	126, 569, 1265, 1323
GlaI	GCGC	1 cut(s)	969
GluI	GCNGC	4 cut(s)	500, 942, 945, 1164
GsaI	CCCAGC	1 cut(s)	198
GsuI	CTGGAG	1 cut(s)	873
HaeII	RGCGCY	1 cut(s)	971
HaeIII	GGCC	4 cut(s)	459, 672, 1263, 1278
HhaI	GCGC	1 cut(s)	970
Hin6I	GCGC	1 cut(s)	968
HinP1I	GCGC	1 cut(s)	968
HindIII	AAGCTT	1 cut(s)	1352
HphI	GGTGA	4 cut(s)	17, 167, 1360, 1574
Hpy166II	GTNNAC	5 cut(s)	46, 431, 734, 1007, 1420
Hpy188I	TCNGA	7 cut(s)	346, 954, 1018, 1292, 1395, 1474, 1519
Hpy188III	TCNNGA	5 cut(s)	60, 91, 753, 852, 1024
Hpy8I	GTNNAC	5 cut(s)	46, 431, 734, 1007, 1420
Hpy99I	CGWCG	1 cut(s)	1005
HpyAV	CCTTC	6 cut(s)	170, 356, 592, 859, 893, 901
HpyCH4III	ACNGT	3 cut(s)	394, 1424, 1537
HpyCH4IV	ACGT	3 cut(s)	172, 334, 1003
HpyF10VI	GCNNNNNNNGC	3 cut(s)	965, 1043, 1169
HpyF3I	CTNAG	7 cut(s)	368, 846, 951, 1167, 1196, 1473, 1592
HpySE526I	ACGT	3 cut(s)	172, 334, 1003
HspAI	GCGC	1 cut(s)	968
Ksp22I	TGATCA	1 cut(s)	718
Kzo9I	GATC	4 cut(s)	718, 913, 1095, 1395
LmnI	GCTCC	1 cut(s)	1436
Lsp1109I	GCAGC	3 cut(s)	511, 928, 931
LweI	GCATC	3 cut(s)	581, 746, 1447
MaeI	CTAG	4 cut(s)	126, 569, 1265, 1323
MaeII	ACGT	3 cut(s)	172, 334, 1003
MaeIII	GTNAC	4 cut(s)	155, 388, 436, 814
MalI	GATC	4 cut(s)	720, 915, 1097, 1397
MboI	GATC	4 cut(s)	718, 913, 1095, 1395
MboII	GAAGA	6 cut(s)	816, 868, 871, 989, 1120, 1391
MfeI	CAATTG	3 cut(s)	17, 71, 1616
MflI	RGATCY	1 cut(s)	913
MhlI	GDGCHC	3 cut(s)	235, 433, 1441
MlsI	TGGCCA	1 cut(s)	672
MluNI	TGGCCA	1 cut(s)	672
MlyI	GAGTC	3 cut(s)	407, 764, 1075
MmeI	TCCRAC	2 cut(s)	1344, 1356
MnlI	CCTC	6 cut(s)	1042, 1162, 1360, 1375, 1563, 1614
Mox20I	TGGCCA	1 cut(s)	672
Mph1103I	ATGCAT	3 cut(s)	265, 381, 596
MscI	TGGCCA	1 cut(s)	672
MseI	TTAA	6 cut(s)	276, 644, 1092, 1133, 1185, 1647
MslI	CAYNNNNRTG	3 cut(s)	990, 1046, 1538
Msp20I	TGGCCA	1 cut(s)	672
MspA1I	CMGCKG	2 cut(s)	502, 1166
MspR9I	CCNGG	2 cut(s)	29, 972
MunI	CAATTG	3 cut(s)	17, 71, 1616
MvaI	CCWGG	2 cut(s)	29, 972
MwoI	GCNNNNNNNGC	3 cut(s)	965, 1043, 1169
NdeII	GATC	4 cut(s)	718, 913, 1095, 1395
NmeAIII	GCCGAG	1 cut(s)	1304
NmuCI	GTSAC	1 cut(s)	155
NsiI	ATGCAT	3 cut(s)	265, 381, 596
NspI	RCATGY	4 cut(s)	80, 748, 989, 1251
NspV	TTCGAA	1 cut(s)	1547
PaeI	GCATGC	2 cut(s)	80, 1251
PagI	TCATGA	1 cut(s)	1023
PaqCI	CACCTGC	1 cut(s)	750
PfeI	GAWTC	7 cut(s)	138, 650, 710, 1013, 1220, 1469, 1580
PkrI	GCNGC	4 cut(s)	501, 943, 946, 1165
PleI	GAGTC	3 cut(s)	407, 764, 1075
PpsI	GAGTC	3 cut(s)	407, 764, 1075
Ppu21I	YACGTR	2 cut(s)	173, 335
PshBI	ATTAAT	1 cut(s)	1133
Psp6I	CCWGG	2 cut(s)	27, 970
PspEI	GGTNACC	1 cut(s)	155
PspFI	CCCAGC	1 cut(s)	194
PspGI	CCWGG	2 cut(s)	27, 970
PspPI	GGNCC	2 cut(s)	31, 457
PstNI	CAGNNNCTG	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	913
PvuII	CAGCTG	1 cut(s)	502
RsaI	GTAC	2 cut(s)	735, 1212
RsaNI	GTAC	2 cut(s)	734, 1211
RseI	CAYNNNNRTG	3 cut(s)	990, 1046, 1538
SaqAI	TTAA	6 cut(s)	276, 644, 1092, 1133, 1185, 1647
SatI	GCNGC	4 cut(s)	500, 942, 945, 1164
Sau3AI	GATC	4 cut(s)	718, 913, 1095, 1395
Sau96I	GGNCC	2 cut(s)	31, 457
SchI	GAGTC	3 cut(s)	407, 764, 1075
ScrFI	CCNGG	2 cut(s)	29, 972
SduI	GDGCHC	3 cut(s)	235, 433, 1441
SfaNI	GCATC	3 cut(s)	581, 746, 1447
SfuI	TTCGAA	1 cut(s)	1547
SinI	GGWCC	1 cut(s)	31
SmiMI	CAYNNNNRTG	3 cut(s)	990, 1046, 1538
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
SphI	GCATGC	2 cut(s)	80, 1251
SsiI	CCGC	2 cut(s)	497, 1164
SspI	AATATT	2 cut(s)	1114, 1137
SspMI	CTAG	4 cut(s)	126, 569, 1265, 1323
StyD4I	CCNGG	2 cut(s)	27, 970
StyI	CCWWGG	2 cut(s)	39, 673
TaaI	ACNGT	3 cut(s)	394, 1424, 1537
TaiI	ACGT	3 cut(s)	175, 337, 1006
TaqI	TCGA	5 cut(s)	183, 229, 653, 1000, 1547
TatI	WGTACW	1 cut(s)	733
TauI	GCSGC	1 cut(s)	1166
TfiI	GAWTC	7 cut(s)	138, 650, 710, 1013, 1220, 1469, 1580
Tru1I	TTAA	6 cut(s)	276, 644, 1092, 1133, 1185, 1647
Tru9I	TTAA	6 cut(s)	276, 644, 1092, 1133, 1185, 1647
TscAI	CASTG	4 cut(s)	433, 937, 1422, 1429
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	3 cut(s)	499, 941, 944
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	9 cut(s)	201, 476, 483, 611, 1057, 1110, 1119, 1233, 1331
TspGWI	ACGGA	1 cut(s)	1218
TspRI	CASTG	4 cut(s)	433, 937, 1422, 1429
VneI	GTGCAC	1 cut(s)	429
VpaK11BI	GGWCC	1 cut(s)	31
VspI	ATTAAT	1 cut(s)	1133
XagI	CCTNNNNNAGG	1 cut(s)	38
XapI	RAATTY	5 cut(s)	217, 251, 520, 544, 1284
XceI	RCATGY	4 cut(s)	80, 748, 989, 1251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	680
XspI	CTAG	4 cut(s)	126, 569, 1265, 1323
Zsp2I	ATGCAT	3 cut(s)	265, 381, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.