Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002476

Physical Location & Seq

Genomic Coordinates Reverse (-)

16960558 .. 16968128

Gene Structure 7571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G35800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5520 bp

ATGGATACGAGGTTTCCGTTCTCTCCGGCCGAGGTCTCTAAAGTCCGGGTGGTCCAGTTTGGCATACTCAGCCCCGATGAGATCAGGCAAATGTCTGTTATACATGTTGAGCATAGTGAGACGACCGAGAAGGGTAAACCTAAGGTGGGAGGATTGAGTGATACCCGTCTTGGTACGATTGATCGGAAGGTGAAGTGTGAGACATGTATGGCTAATATGGCTGAGTGTCCGGGACATTTTGGCTATCTTGAGCTCGCTAAGCCAATGTATCATGTCGGTTTTATGAAGACAGTGTTAAGTATCATGAGATGTGTCTGTTTCAATTGCTCCAAGATTTTAGCTGATGAGGAGGAGCATAAGTTTAAGCAGGCTATGAAGATCAAGAATCCTAAGAATAGGCTTAAGAAGATTCTGGATGCCTGCAAAAACAAGACCAAATGTGATGGTGGTGATGACATTGACGATGTCCAAAGCCACAGCACGGATGAACCAGTAAAAAAGAGCCGAGGTGGATGTGGTGCACAACAACCAAAACTGACTATTGAGGGTATGAAGATGATTGCAGAATACAAAATTCAAAGGAAGAAAAATGATGAGCCAGATCAGCTTCCCGAGCCTGCAGAAAGGAAACAGACACTTGGTGCTGATAGGGTTTTGAGTGTTTTGAAAAGGATTAGTGACGCGGATTGTCAACTCCTAGGTTTCAACCCTAAGTTTGCTCGTCCTGACTGGATGATTCTTGAAGTCCTTCCTATTCCTCCACCCCCTGTCAGACCATCTGTAATGATGGACGCCACTTCCAGGAGTGAGGATGACTTGACCCATCAGCTAGCTATGATTATTCGACACAATGAAAACTTGAAAAGGCAGGAAAAAAATGGAGCGCCAGCTCATATTATATCAGAGTTTACACAACTCTTGCAGTTTCATATAGCTACGTATTTTGATAACGAGTTGCCTGGACAGCCAAGGGCTACTCAGAAATCAGGGAGGCCTATTAAATCAATATGTAGTAGGCTGAAGGCAAAGGAAGGCAGAATCAGGGGTAACTTGATGGGAAAACGTGTTGATTTCTCGGCACGTACTGTTATTACTCCAGATCCAACAATAAATATTGATGAACTTGGTGTTCCGTGGAGTATTGCTCTGAATCTCACATACCCAGAAACAGTTACTCCCTATAACATTGAAAGATTAAAGGAGCTTGTTGATTATGGACCACATCCTCCACCTGGGAAGACTGGAGCGAAATATATCATAAGAGATGATGGCCAAAGACTAGATCTTCGGTATCTTAAGAAGAGCAGTGATCAACATTTGGAACTTGGATACAAGGTGGAGCGGCATTTACAGGATGGTGATTTTGTTCTGTTTAATCGTCAACCAAGTCTGCACAAAATGTCTATCATGGGTCACAGGATTAGGATTATGCCATATTCCACTTTCCGTCTGAATTTGTCTGTCACGTCTCCGTACAATGCTGATTTTGATGGGGATGAGATGAACATGCATGTACCACAATCATTCGAGACCAGAGCCGAGGTGTTAGAGCTGATGATGGTTCCTAAATGTATTGTCTCCCCCCAGGCGAATCGTCCTGTGATGGGAATTGTGCAGGATACCCTCTTGGGGTGCCGTAAAATTACAAAGAGAGATACTTTCATAGAGAAGGATGTATTCATGAACACACTGATGTGGTGGGAAGACTTCGATGGGAAAGTTCCGGCTCCTGCAATCTTGAAGCCTCGTCCTCTTTGGACTGGCAAACAAGTTTTTAATCTTATCATACCAAAACAGATAAATCTGTTGAGGTACTCTGCTTGGCACGCAGATACAGAGACTGGATTTATAACTCCGGGGGATACTCAAGTGCGAATTGAAAGAGGGGAACTTCTTGCCGGAACTCTTTGCAAAAAGACCCTTGGTACATCTAATGGAAGTCTCGTGCATGTCATTTGGGAAGAGGTTGGTCCTGATGCAGCTAGAAAATTCCTCGGTCATACTCAATGGCTTGTCAATTACTGGCTTCTGCAGAATGGTTTTACCATCGGAATTGGTGACACAATTGCCGATTCATCAACAATGGAGAAAATTAATGAAACTATTTCCAATGCAAAAACTGCTGTGAAAGATCTTATCCGGCAGTTCCAGGGAAAGGAATTGGACCCTGAGCCTGGCCGAACTATGAGAGATACATTTGAGAACAGGGTTAACCAGGTTTTGAATAAAGCTCGTGATGATGCTGGAAGTAGTGCTCAAAAGAGTTTAGCAGAAACCAATAACCTTAAGGCCATGGTGACAGCAGGATCCAAAGGAAGTTTCATCAATATTTCTCAAATGACAGCGTGTGTCGGTCAGCAAAATGTTGAAGGGAAGCGAATTCCATTTGGATTTGATGGGCGGACATTGCCACATTTCACCAAAGATGATTATGGTCCTGAAAGTCGTGGTTTTGTTGAGAATTCGTACCTGCGTGGCTTGACTCCTCAAGAGTTCTTTTTCCATGCTATGGGAGGACGAGAAGGTCTTATTGATACTGCTGTGAAGACATCAGAAACTGGATACATTCAGAGGCGATTGGTAAAGGCTATGGAGGATATTATGGTTAAGTATGATGGGACAGTCAGAAACTCTTTGGGTGATGTTATTCAATTTCTCTATGGAGAAGATGGTATGGATGCTGTATGGATAGAATCACAGAAGCTGGATTCCTTGAAAATGAAGAAATCAGAGTTTGATAGGACTTTTAAGTATGAGATTGACGACGAAAACTGGAATCCTACTTACCTAAGTGATGAACATCTTGAAGACTTGAAGGGGATTCGGGAGTTGCGTGATGTATTCGATGCGGAATATTCGAAACTTGAGACTGACAGATTCCAACTCGGGACAGAAATTGCAACAAATGGTGATAGCACTTGGCCATTGCCTGTTAACATCAAGAGGCATATCTGGAATGCGCAGAAGACTTTCAAAATTGACTTGCGCAAAATTTCAGATATGCACCCTGTTGAAATTGTTGATGCTGTTGATAAACTACAGGAGAGGCTGTTGGTTGTTCCTGGTGATGATGCGTTGAGTGTGGAAGCACAGAAAAACGCAACATTGTTCTTTAACATTTTGCTTCGCAGCACTCTTGCTAGTAAAAGAGTGTTGGAAGAATACAAGCTCAGCCGCGAGGCTTTTGAGTGGGTCATTGGTGAGATTGAATCAAGGTTTTTACAATCGCTAGTGGCCCCAGGGGAAATGATCGGTTGTGTTGCTGCTCAATCAATTGGAGAACCTGCTACGCAGATGACTCTGAATACCTTCCATTATGCTGGTGTCAGTGCAAAGAACGTTACGCTCGGAGTTCCCAGGTTGCGTGAAATTATTAATGTAGCTAAGAGGATCAAAACACCATCCCTATCAGTCTATCTCACTCCGGAAGCTAGCAAATCAAAAGAGGGGGCTAAGACTGTTCAGTGTGCTTTGGAGTATACTACTCTCAGGAGTGTTACTCAAGCTACGGAAGTCTGGTATGACCCAGATCCAATGAGTACAATAATTGAAGAGGACTTTGAATTTGTGAGGTCCTACTATGAAATGCCAGATGAAGATGTTTCCCCAGATAAGATATCTCCGTGGCTACTTCGTATAGAGTTGAATCGCGAGATGATGGTTGATAAGAAATTGAGTATGGCGGATATTGCGGAGAAGATCAACCTTGAGTTCGATGATGACCTAACTTGCATATTCAATGATGATAATGCTCAAAAACTGATCCTTCGAATTCGCATTATGAACGATGAGGGCCCAAAGGGAGAGTTGCAAGATGAATCGGCTGAAGATGATGTTTTCCTCAAAAAGATTGAGAGCAACATGCTGACAGAAATGGCACTCAGAGGTATTCCAGACATCAACAAGGTTTTTATAAAACAGGTTAGAAAGAGCAGGTTTGATGAGGAGGGAGGCTTCAAGACATCTGAGGAGTGGATGTTGGATACAGAAGGTGTGAACCTCTTAGCTGTCATGTGTCACGAAGATGTGGATCCAAAGAGGACAACAAGCAATCACTTGATTGAAATTATTGAAGTTCTCGGAATTGAGGCAGTTCGTCGTGCTTTGCTTGATGAACTCCGTGTTGTGATATCCTTTGATGGTTCTTATGTGAATTACCGTCATCTTGCCATCTTGTGTGATACTATGACCTATCGCGGTCATCTGATGGCTATCACTCGACACGGTATCAATAGAAATGACACTGGGCCTCTGATGAGATGCTCTTTTGAAGAAACAGTTGATATTCTGCTAGATGCTGCGGCTTATGCTGAGACAGACTGCTTACGGGGTGTTACTGAGAATATAATGTTGGGTCAACTTGCACCAATTGGGACAGGAGATTGTGAGTTGTATCTGAATGATGAGATGCTGAAGAATGCAATTGAACTTCAGCTCCCTAGCTATATGGATGGTCTTGAATTTGGAATGACTCCTGCTCGTTCACCAGTGTCAGGCACTCCTTACCATGAAGGCATGATGTCTCCAAACTACCTGTTAAGTCCAAATATGCGTTTATCCCCAATGTCAGATGCACAGTTTTCTCCATATGTTGGTGGAATGGCCTTTTCGCCTTCTTCTTCTCCAGGATATAGTCCATCATCGCCTGGATACAGTCCTACTTCTCCCGGTTACAGTCCAACTTCGCCTGGATATAGCCCGACTTCTCCCGGTTACAGTCCAACTTCGCCTACCTACAGTCCCAGTTCTCCTGGCTATAGCCCAACAAGCCCTGCTTATTCTCCTACAAGTCCTTCCTATTCTCCTACCTCTCCGAGCTACAGCCCAACGTCTCCAAGCTATAGCCCAACGTCGCCAAGCTACAGCCCGACATCTCCGAGCTACAGTCCTACTTCCCCAAGTTACAGCCCGACTTCGCCTGCTTACAGCCCGACTTCACCTGCTTACAGCCCAACTTCACCAGCATACAGCCCAACCTCTCCTTCTTACAGCCCAACTTCACCTTCTTACAGCCCAACATCGCCTTCTTACAGCCCTACTTCACCATCTTACAGCCCAACATCTCCGTCTTACAGCCCTACTTCACCCGCATATAGCCCCACATCTCCTGGCTACAGCCCTACTTCACCAAGTTACAGTCCAACATCACCAAGCTACGGTCCTACGTCTCCAAGCTACAACCCTCAGTCTGCTAAATATAGCCCATCTATAGCTTACTCTCCTAGCAATGCAAGACTATCACCAGCTAGCCCCTACAGTCCTACATCTCCCAACTACAGCCCGACATCTCCATCATACTCACCCACATCTCCATCTTATTCACCTTCAAGTCCAACATACAGTCCCAGCAGCCCATACAGCTCAGGAGCAAGCCCAGACTACAGCCCAAGCGCAGGCTACTCGCCAACACTTCCCGGTTATTCACCGTCATCAACGGGTCAGTATACCCCACATGAGGGCGATAAAAAGGACAAGACTGGAAAAAAAGATGCCAGTAAGGATGATAAAGGCAACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0005773 GO:0005911 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030054 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0055029 GO:0055044 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_R

Protein Analysis

1839

Amino Acids

204.62

Weight (kDa)

5.72

Isoelectric Point (pI)

59.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_1	PF04997	14 - 351	1.1e-113	RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2	PF00623	353 - 521	2.1e-71	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3	PF04983	524 - 688	7.1e-51	RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4	PF05000	719 - 819	8.7e-39	RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5	PF04998	826 - 1416	1e-104	RNA polymerase Rpb1, domain 5
RNA_pol_Rpb1_6	PF04992	892 - 1076	7.4e-71	RNA polymerase Rpb1, domain 6
RNA_pol_Rpb1_7	PF04990	1161 - 1295	2.8e-53	RNA polymerase Rpb1, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35800 AT4G35800
fragaria_vesca	FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070
malus_domestica	MD02G1123200.v1.1 MD02G1123400.v1.1 MD02G1125500.v1.1 MD02G1125800.v1.1 MD15G1237200.v1.1
prunus_persica	Prupe.7G175200_v2.0.a1
pyrus_communis	pycom02g09610 pycom15g21110
rosa_chinensis	RchiOBHm_Chr2g0098321 RchiOBHm_Chr2g0098331
rosa_laevigata	RLG00000016790 RLG00000016791
rosa_multiflora	Rmu_co8358581.1_g000001 Rmu_sc0003434.1_g000008 Rmu_sc0023772.1_g000002 Rmu_sc0042863.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144060 Rroxscaffold_2G00144070
rosa_rugosa	Rorug02G0072000 Rorug02G0072000 Rorug02G0072100
rosa_samantha	Rh2AG119100 Rh2AG119200 Rh2BG122300 Rh2BG122400 Rh2CG123900 Rh2CG124000 Rh2DG123900 Rh2DG124000
rosa_wichuraiana	Rw2G009330 Rw2G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1850, 3914
AarI	CACCTGC	1 cut(s)	4948
AasI	GACNNNNNNGTC	1 cut(s)	2523
Acc16I	TGCGCA	2 cut(s)	2961, 2987
Acc36I	ACCTGC	4 cut(s)	2478, 3292, 3924, 4948
AccB1I	GGYRCC	1 cut(s)	1632
AccB7I	CCANNNNNTGG	2 cut(s)	2509, 4592
AccBSI	CCGCTC	1 cut(s)	1342
AccI	GTMKAC	2 cut(s)	3479, 5444
AccII	CGCG	4 cut(s)	683, 3177, 3651, 4197
AccIII	TCCGGA	1 cut(s)	3424
AclI	AACGTT	1 cut(s)	3339
AclWI	GGATC	8 cut(s)	1094, 2301, 2314, 3398, 3524, 3757, 4025, 4038
AcoI	YGGCCR	4 cut(s)	27, 1270, 2176, 2921
AcsI	RAATTY	9 cut(s)	573, 1453, 1988, 2379, 2461, 2991, 3563, 3771, 4460
AcuI	CTGAAG	4 cut(s)	1040, 3846, 4415, 4433
AcyI	GRCGYC	1 cut(s)	792
AdeI	CACNNNGTG	1 cut(s)	641
AfaI	GTAC	8 cut(s)	175, 1084, 1475, 1515, 1814, 1927, 2468, 3541
AflII	CTTAAG	3 cut(s)	401, 1295, 2285
AflIII	ACRYGT	3 cut(s)	103, 203, 1063
AjiI	CACGTC	1 cut(s)	1467
AleI	CACNNNNGTG	1 cut(s)	1693
AloI	GAACNNNNNNTCC	2 cut(s)	4419, 4451
Alw21I	GWGCWC	3 cut(s)	255, 523, 2257
Alw44I	GTGCAC	1 cut(s)	519
AlwI	GGATC	8 cut(s)	1094, 2301, 2314, 3398, 3524, 3757, 4025, 4038
AlwNI	CAGNNNCTG	3 cut(s)	1841, 2558, 2704
Ama87I	CYCGRG	2 cut(s)	611, 2885
Aor13HI	TCCGGA	1 cut(s)	3424
ApaI	GGGCCC	1 cut(s)	3797
ApaLI	GTGCAC	1 cut(s)	519
ApeKI	GCWGC	5 cut(s)	1979, 3129, 3263, 4298, 5349
ApoI	RAATTY	9 cut(s)	573, 1453, 1988, 2379, 2461, 2991, 3563, 3771, 4460
ArsI	GACNNNNNNTTYG	4 cut(s)	1269, 1301, 3548, 3580
AseI	ATTAAT	2 cut(s)	2094, 3375
Asp700I	GAANNNNTTC	3 cut(s)	747, 2969, 3308
AspA2I	CCTAGG	1 cut(s)	697
AspLEI	GCGC	4 cut(s)	886, 2962, 2988, 5393
AsuC2I	CCSGG	6 cut(s)	47, 231, 1857, 4668, 4710, 5415
AsuII	TTCGAA	2 cut(s)	2858, 3769
AsuNHI	GCTAGC	3 cut(s)	829, 3431, 5246
AvaI	CYCGRG	2 cut(s)	611, 2885
AvaII	GGWCC	7 cut(s)	52, 1217, 1970, 2164, 2435, 3573, 5159
AvrII	CCTAGG	1 cut(s)	697
AxyI	CCTNAGG	1 cut(s)	141
BaeGI	GKGCMC	2 cut(s)	523, 3797
BaeI	ACNNNNGTAYC	4 cut(s)	1854, 1887, 2526, 2559
BalI	TGGCCA	2 cut(s)	1272, 2923
BamHI	GGATCC	2 cut(s)	2306, 4030
BanI	GGYRCC	1 cut(s)	1632
BanII	GRGCYC	2 cut(s)	255, 3797
BauI	CACGAG	2 cut(s)	1943, 2232
BbsI	GAAGAC	6 cut(s)	293, 1244, 1710, 2552, 2814, 2972
Bbv12I	GWGCWC	3 cut(s)	255, 523, 2257
BbvI	GCAGC	5 cut(s)	1991, 3141, 3250, 4285, 5361
BceAI	ACGGC	1 cut(s)	1620
BcgI	CGANNNNNNTGC	2 cut(s)	5382, 5416
BciVI	GTATCC	6 cut(s)	1322, 1612, 1855, 2555, 3976, 4643
BclI	TGATCA	1 cut(s)	1309
BcnI	CCSGG	6 cut(s)	47, 231, 1857, 4668, 4710, 5415
BfoI	RGCGCY	1 cut(s)	887
BfrI	CTTAAG	3 cut(s)	401, 1295, 2285
BfuAI	ACCTGC	4 cut(s)	2478, 3292, 3924, 4948
BfuI	GTATCC	6 cut(s)	1322, 1612, 1855, 2555, 3976, 4643
BglII	AGATCT	2 cut(s)	1282, 2131
BisI	GCNGC	8 cut(s)	1343, 1980, 3130, 3175, 3264, 4299, 4302, 5350
BlnI	CCTAGG	1 cut(s)	697
BlpI	GCTNAGC	2 cut(s)	258, 3170
BlsI	GCNGC	8 cut(s)	1344, 1981, 3131, 3176, 3265, 4300, 4303, 5351
Bme18I	GGWCC	7 cut(s)	52, 1217, 1970, 2164, 2435, 3573, 5159
BmeT110I	CYCGRG	2 cut(s)	611, 2885
BmgBI	CACGTC	1 cut(s)	1467
BmiI	GGNNCC	8 cut(s)	1563, 1634, 1728, 2166, 2308, 3237, 3795, 4032
BmrI	ACTGGG	2 cut(s)	4254, 4737
BmtI	GCTAGC	3 cut(s)	833, 3435, 5250
BmuI	ACTGGG	2 cut(s)	4254, 4737
BpiI	GAAGAC	6 cut(s)	293, 1244, 1710, 2552, 2814, 2972
BplI	GAGNNNNNCTC	4 cut(s)	1129, 1161, 3484, 3516
BpmI	CTGGAG	3 cut(s)	1080, 1263, 4608
Bpu10I	CCTNAGC	2 cut(s)	2169, 5362
Bpu1102I	GCTNAGC	2 cut(s)	258, 3170
Bpu14I	TTCGAA	2 cut(s)	2858, 3769
BpuEI	CTTGAG	6 cut(s)	269, 1851, 2472, 2885, 3486, 3728
BpuMI	CCSGG	6 cut(s)	47, 231, 1857, 4668, 4710, 5415
BsaAI	YACGTR	2 cut(s)	939, 1082
BsaBI	GATNNNNATC	3 cut(s)	2799, 4029, 4211
BsaHI	GRCGYC	1 cut(s)	792
BsaI	GGTCTC	2 cut(s)	40, 1523
BsaWI	WCCGGW	1 cut(s)	3424
Bse21I	CCTNAGG	1 cut(s)	141
Bse3DI	GCAATG	3 cut(s)	2405, 2924, 5233
Bse8I	GATNNNNATC	3 cut(s)	2799, 4029, 4211
BseAI	TCCGGA	1 cut(s)	3424
BseJI	GATNNNNATC	3 cut(s)	2799, 4029, 4211
BseMI	GCAATG	3 cut(s)	2405, 2924, 5233
BseRI	GAGGAG	5 cut(s)	362, 365, 2475, 3959, 3983
BseSI	GKGCMC	2 cut(s)	523, 3797
BseX3I	CGGCCG	1 cut(s)	27
BseXI	GCAGC	5 cut(s)	1991, 3141, 3250, 4285, 5361
BseYI	CCCAGC	1 cut(s)	5345
BsgI	GTGCAG	2 cut(s)	1376, 1634
Bsh1236I	CGCG	4 cut(s)	683, 3177, 3651, 4197
Bsh1285I	CGRYCG	2 cut(s)	30, 126
BshNI	GGYRCC	1 cut(s)	1632
BsiEI	CGRYCG	2 cut(s)	30, 126
BsiHKAI	GWGCWC	3 cut(s)	255, 523, 2257
BsiHKCI	CYCGRG	2 cut(s)	611, 2885
BslFI	GGGAC	6 cut(s)	246, 2632, 2902, 4387, 4725, 5328
BsmBI	CGTCTC	4 cut(s)	113, 1473, 4836, 5172
BsmFI	GGGAC	6 cut(s)	246, 2632, 2902, 4387, 4725, 5328
BsmI	GAATGC	2 cut(s)	2962, 4423
Bso31I	GGTCTC	2 cut(s)	40, 1523
BsoBI	CYCGRG	2 cut(s)	611, 2885
Bsp119I	TTCGAA	2 cut(s)	2858, 3769
Bsp120I	GGGCCC	1 cut(s)	3793
Bsp1286I	GDGCHC	4 cut(s)	255, 523, 2257, 3797
Bsp13I	TCCGGA	1 cut(s)	3424
Bsp1720I	GCTNAGC	2 cut(s)	258, 3170
Bsp19I	CCATGG	1 cut(s)	2292
Bsp68I	TCGCGA	1 cut(s)	3651
BspEI	TCCGGA	1 cut(s)	3424
BspFNI	CGCG	4 cut(s)	683, 3177, 3651, 4197
BspHI	TCATGA	2 cut(s)	303, 1680
BspLI	GGNNCC	8 cut(s)	1563, 1634, 1728, 2166, 2308, 3237, 3795, 4032
BspMAI	CTGCAG	2 cut(s)	622, 2034
BspMI	ACCTGC	4 cut(s)	2478, 3292, 3924, 4948
BspOI	GCTAGC	3 cut(s)	833, 3435, 5250
BspPI	GGATC	8 cut(s)	1094, 2301, 2314, 3398, 3524, 3757, 4025, 4038
BspQI	GCTCTTC	1 cut(s)	1295
BspT104I	TTCGAA	2 cut(s)	2858, 3769
BspT107I	GGYRCC	1 cut(s)	1632
BspTI	CTTAAG	3 cut(s)	401, 1295, 2285
BspTNI	GGTCTC	2 cut(s)	40, 1523
BsrBI	CCGCTC	1 cut(s)	1342
BsrDI	GCAATG	3 cut(s)	2405, 2924, 5233
BssNAI	GTATAC	2 cut(s)	3480, 5445
BssNI	GRCGYC	1 cut(s)	792
BssSI	CACGAG	2 cut(s)	1943, 2232
BssT1I	CCWWGG	4 cut(s)	697, 968, 1921, 2292
Bst1107I	GTATAC	2 cut(s)	3480, 5445
Bst2BI	CACGAG	2 cut(s)	1943, 2232
Bst6I	CTCTTC	3 cut(s)	1295, 1956, 3546
BstACI	GRCGYC	1 cut(s)	792
BstAFI	CTTAAG	3 cut(s)	401, 1295, 2285
BstAPI	GCANNNNNTGC	1 cut(s)	2120
BstBAI	YACGTR	2 cut(s)	939, 1082
BstBI	TTCGAA	2 cut(s)	2858, 3769
BstDSI	CCRYGG	3 cut(s)	1133, 2292, 3623
BstFNI	CGCG	4 cut(s)	683, 3177, 3651, 4197
BstH2I	RGCGCY	1 cut(s)	887
BstHHI	GCGC	4 cut(s)	886, 2962, 2988, 5393
BstMCI	CGRYCG	2 cut(s)	30, 126
BstNSI	RCATGY	6 cut(s)	107, 207, 1510, 1514, 1952, 3865
BstSLI	GKGCMC	2 cut(s)	523, 3797
BstSNI	TACGTA	1 cut(s)	939
BstUI	CGCG	4 cut(s)	683, 3177, 3651, 4197
BstV1I	GCAGC	5 cut(s)	1991, 3141, 3250, 4285, 5361
BstV2I	GAAGAC	6 cut(s)	293, 1244, 1710, 2552, 2814, 2972
BstX2I	RGATCY	6 cut(s)	1099, 1282, 2131, 2306, 3529, 4030
BstXI	CCANNNNNNTGG	1 cut(s)	3320
BstYI	RGATCY	6 cut(s)	1099, 1282, 2131, 2306, 3529, 4030
BstZ17I	GTATAC	2 cut(s)	3480, 5445
BstZI	CGGCCG	1 cut(s)	27
Bsu36I	CCTNAGG	1 cut(s)	141
BsuI	GTATCC	6 cut(s)	1322, 1612, 1855, 2555, 3976, 4643
BtgI	CCRYGG	3 cut(s)	1133, 2292, 3623
BtgZI	GCGATG	2 cut(s)	4626, 5004
BtrI	CACGTC	1 cut(s)	1467
BtsI	GCAGTG	1 cut(s)	1312
BtsIMutI	CAGTG	7 cut(s)	297, 1312, 1688, 3334, 3470, 4242, 4494
BtuMI	TCGCGA	1 cut(s)	3651
BveI	ACCTGC	4 cut(s)	2478, 3292, 3924, 4948
CaiI	CAGNNNCTG	3 cut(s)	1841, 2558, 2704
CciI	TCATGA	2 cut(s)	303, 1680
CfoI	GCGC	4 cut(s)	886, 2962, 2988, 5393
CseI	GACGC	2 cut(s)	689, 800
CsiI	ACCWGGT	1 cut(s)	2214
Csp6I	GTAC	8 cut(s)	174, 1083, 1474, 1514, 1813, 1926, 2467, 3540
CviQI	GTAC	8 cut(s)	174, 1083, 1474, 1514, 1813, 1926, 2467, 3540
DraIII	CACNNNGTG	1 cut(s)	641
DrdI	GACNNNNNNGTC	1 cut(s)	2523
DseDI	GACNNNNNNGTC	1 cut(s)	2523
EaeI	YGGCCR	4 cut(s)	27, 1270, 2176, 2921
EagI	CGGCCG	1 cut(s)	27
Eam1104I	CTCTTC	3 cut(s)	1295, 1956, 3546
EarI	CTCTTC	3 cut(s)	1295, 1956, 3546
EciI	GGCGGA	2 cut(s)	2416, 3698
Ecl136II	GAGCTC	1 cut(s)	253
EclXI	CGGCCG	1 cut(s)	27
Eco105I	TACGTA	1 cut(s)	939
Eco130I	CCWWGG	4 cut(s)	697, 968, 1921, 2292
Eco147I	AGGCCT	1 cut(s)	994
Eco24I	GRGCYC	2 cut(s)	255, 3797
Eco31I	GGTCTC	2 cut(s)	40, 1523
Eco32I	GATATC	2 cut(s)	3618, 4131
Eco47I	GGWCC	7 cut(s)	52, 1217, 1970, 2164, 2435, 3573, 5159
Eco52I	CGGCCG	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	253
Eco57I	CTGAAG	4 cut(s)	1040, 3846, 4415, 4433
Eco81I	CCTNAGG	1 cut(s)	141
Eco88I	CYCGRG	2 cut(s)	611, 2885
EcoICRI	GAGCTC	1 cut(s)	253
EcoO109I	RGGNCCY	2 cut(s)	3573, 3793
EcoRI	GAATTC	3 cut(s)	2379, 2461, 3771
EcoRV	GATATC	2 cut(s)	3618, 4131
EcoT14I	CCWWGG	4 cut(s)	697, 968, 1921, 2292
EcoT22I	ATGCAT	1 cut(s)	1512
EcoT38I	GRGCYC	2 cut(s)	255, 3797
ErhI	CCWWGG	4 cut(s)	697, 968, 1921, 2292
Esp3I	CGTCTC	4 cut(s)	113, 1473, 4836, 5172
FalI	AAGNNNNNCTT	2 cut(s)	4759, 4791
FaqI	GGGAC	6 cut(s)	246, 2632, 2902, 4387, 4725, 5328
FauI	CCCGC	1 cut(s)	5095
FauNDI	CATATG	1 cut(s)	4588
FbaI	TGATCA	1 cut(s)	1309
FblI	GTMKAC	2 cut(s)	3479, 5444
Fnu4HI	GCNGC	8 cut(s)	1343, 1980, 3130, 3175, 3264, 4299, 4302, 5350
FriOI	GRGCYC	2 cut(s)	255, 3797
Fsp4HI	GCNGC	8 cut(s)	1343, 1980, 3130, 3175, 3264, 4299, 4302, 5350
FspI	TGCGCA	2 cut(s)	2961, 2987
GlaI	GCGC	4 cut(s)	885, 2961, 2987, 5392
GluI	GCNGC	8 cut(s)	1343, 1980, 3130, 3175, 3264, 4299, 4302, 5350
GsaI	CCCAGC	1 cut(s)	5349
GsuI	CTGGAG	3 cut(s)	1080, 1263, 4608
HaeII	RGCGCY	1 cut(s)	887
HgaI	GACGC	2 cut(s)	689, 800
HhaI	GCGC	4 cut(s)	886, 2962, 2988, 5393
Hin1I	GRCGYC	1 cut(s)	792
Hin6I	GCGC	4 cut(s)	884, 2960, 2986, 5391
HinP1I	GCGC	4 cut(s)	884, 2960, 2986, 5391
HincII	GTYRAC	5 cut(s)	692, 1382, 2212, 2935, 4358
HindII	GTYRAC	5 cut(s)	692, 1382, 2212, 2935, 4358
HpaI	GTTAAC	2 cut(s)	2212, 2935
Hpy99I	CGWCG	3 cut(s)	2768, 4101, 4855
HpyCH4IV	ACGT	8 cut(s)	938, 1063, 1081, 1466, 3339, 4829, 4850, 5165
HpySE526I	ACGT	8 cut(s)	938, 1063, 1081, 1466, 3339, 4829, 4850, 5165
Hsp92I	GRCGYC	1 cut(s)	792
HspAI	GCGC	4 cut(s)	884, 2960, 2986, 5391
Kpn2I	TCCGGA	1 cut(s)	3424
Ksp22I	TGATCA	1 cut(s)	1309
KspAI	GTTAAC	2 cut(s)	2212, 2935
LguI	GCTCTTC	1 cut(s)	1295
LmnI	GCTCC	9 cut(s)	332, 352, 881, 1201, 1244, 1339, 1732, 4440, 5366
Lsp1109I	GCAGC	5 cut(s)	1991, 3141, 3250, 4285, 5361
MabI	ACCWGGT	1 cut(s)	2214
MaeII	ACGT	8 cut(s)	938, 1063, 1081, 1466, 3339, 4829, 4850, 5165
MbiI	CCGCTC	1 cut(s)	1342
MfeI	CAATTG	5 cut(s)	322, 2064, 3273, 4368, 4422
MflI	RGATCY	6 cut(s)	1099, 1282, 2131, 2306, 3529, 4030
MhlI	GDGCHC	4 cut(s)	255, 523, 2257, 3797
MlsI	TGGCCA	2 cut(s)	1272, 2923
MluNI	TGGCCA	2 cut(s)	1272, 2923
MlyI	GAGTC	3 cut(s)	2476, 3292, 4465
MmeI	TCCRAC	8 cut(s)	1127, 2905, 3135, 3960, 4703, 4745, 5165, 5357
Mox20I	TGGCCA	2 cut(s)	1272, 2923
Mph1103I	ATGCAT	1 cut(s)	1512
MroI	TCCGGA	1 cut(s)	3424
MroXI	GAANNNNTTC	3 cut(s)	747, 2969, 3308
MscI	TGGCCA	2 cut(s)	1272, 2923
MslI	CAYNNNNRTG	3 cut(s)	1691, 1693, 4023
Msp20I	TGGCCA	2 cut(s)	1272, 2923
MspCI	CTTAAG	3 cut(s)	401, 1295, 2285
MunI	CAATTG	5 cut(s)	322, 2064, 3273, 4368, 4422
Mva1269I	GAATGC	2 cut(s)	2962, 4423
MvnI	CGCG	4 cut(s)	683, 3177, 3651, 4197
NciI	CCSGG	6 cut(s)	47, 231, 1857, 4668, 4710, 5415
NcoI	CCATGG	1 cut(s)	2292
NdeI	CATATG	1 cut(s)	4588
NheI	GCTAGC	3 cut(s)	829, 3431, 5246
NlaIV	GGNNCC	8 cut(s)	1563, 1634, 1728, 2166, 2308, 3237, 3795, 4032
NmeAIII	GCCGAG	4 cut(s)	55, 530, 1055, 1564
NmuCI	GTSAC	6 cut(s)	677, 1412, 1462, 2057, 2296, 4016
NruI	TCGCGA	1 cut(s)	3651
NsbI	TGCGCA	2 cut(s)	2961, 2987
NsiI	ATGCAT	1 cut(s)	1512
NspI	RCATGY	6 cut(s)	107, 207, 1510, 1514, 1952, 3865
NspV	TTCGAA	2 cut(s)	2858, 3769
OliI	CACNNNNGTG	1 cut(s)	1693
PagI	TCATGA	2 cut(s)	303, 1680
PaqCI	CACCTGC	1 cut(s)	4948
PasI	CCCWGGG	1 cut(s)	3239
PceI	AGGCCT	1 cut(s)	994
PciI	ACATGT	2 cut(s)	103, 203
PciSI	GCTCTTC	1 cut(s)	1295
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 2830
PctI	GAATGC	2 cut(s)	2962, 4423
PdmI	GAANNNNTTC	3 cut(s)	747, 2969, 3308
PflFI	GACNNNGTC	1 cut(s)	464
PflMI	CCANNNNNTGG	2 cut(s)	2509, 4592
PfoI	TCCNGGA	3 cut(s)	229, 800, 4624
PkrI	GCNGC	8 cut(s)	1344, 1981, 3131, 3176, 3265, 4300, 4303, 5351
PleI	GAGTC	3 cut(s)	2476, 3292, 4465
PpsI	GAGTC	3 cut(s)	2476, 3292, 4465
Ppu21I	YACGTR	2 cut(s)	939, 1082
PpuMI	RGGWCCY	1 cut(s)	3573
PscI	ACATGT	2 cut(s)	103, 203
PshBI	ATTAAT	2 cut(s)	2094, 3375
PsiI	TTATAA	2 cut(s)	1850, 3914
Psp124BI	GAGCTC	1 cut(s)	255
Psp1406I	AACGTT	1 cut(s)	3339
Psp5II	RGGWCCY	1 cut(s)	3573
PspFI	CCCAGC	1 cut(s)	5345
PspN4I	GGNNCC	8 cut(s)	1563, 1634, 1728, 2166, 2308, 3237, 3795, 4032
PspOMI	GGGCCC	1 cut(s)	3793
PspPPI	RGGWCCY	1 cut(s)	3573
PstI	CTGCAG	2 cut(s)	622, 2034
PstNI	CAGNNNCTG	3 cut(s)	1841, 2558, 2704
PsuI	RGATCY	6 cut(s)	1099, 1282, 2131, 2306, 3529, 4030
PsyI	GACNNNGTC	1 cut(s)	464
RruI	TCGCGA	1 cut(s)	3651
RsaI	GTAC	8 cut(s)	175, 1084, 1475, 1515, 1814, 1927, 2468, 3541
RsaNI	GTAC	8 cut(s)	174, 1083, 1474, 1514, 1813, 1926, 2467, 3540
RseI	CAYNNNNRTG	3 cut(s)	1691, 1693, 4023
SacI	GAGCTC	1 cut(s)	255
SapI	GCTCTTC	1 cut(s)	1295
SatI	GCNGC	8 cut(s)	1343, 1980, 3130, 3175, 3264, 4299, 4302, 5350
SchI	GAGTC	3 cut(s)	2476, 3292, 4465
SduI	GDGCHC	4 cut(s)	255, 523, 2257, 3797
SexAI	ACCWGGT	1 cut(s)	2214
SfuI	TTCGAA	2 cut(s)	2858, 3769
SinI	GGWCC	7 cut(s)	52, 1217, 1970, 2164, 2435, 3573, 5159
SmiMI	CAYNNNNRTG	3 cut(s)	1691, 1693, 4023
SmlI	CTYRAG	9 cut(s)	248, 401, 1295, 1866, 2285, 2487, 2864, 3501, 3707
SmoI	CTYRAG	9 cut(s)	248, 401, 1295, 1866, 2285, 2487, 2864, 3501, 3707
SnaBI	TACGTA	1 cut(s)	939
SseBI	AGGCCT	1 cut(s)	994
SspI	AATATT	3 cut(s)	1114, 2329, 2855
SstI	GAGCTC	1 cut(s)	255
StuI	AGGCCT	1 cut(s)	994
StyI	CCWWGG	4 cut(s)	697, 968, 1921, 2292
TaiI	ACGT	8 cut(s)	941, 1066, 1084, 1469, 3342, 4832, 4853, 5168
TaqI	TCGA	8 cut(s)	844, 1527, 1710, 2844, 2858, 3714, 3769, 4219
TaqII	GACCGA	3 cut(s)	140, 1985, 2342
TatI	WGTACW	1 cut(s)	3539
TauI	GCSGC	3 cut(s)	1345, 3177, 4304
TscAI	CASTG	7 cut(s)	297, 1312, 1695, 3334, 3470, 4249, 4494
TseFI	GTSAC	6 cut(s)	677, 1412, 1462, 2057, 2296, 4016
TseI	GCWGC	5 cut(s)	1979, 3129, 3263, 4298, 5349
Tsp45I	GTSAC	6 cut(s)	677, 1412, 1462, 2057, 2296, 4016
TspGWI	ACGGA	9 cut(s)	6, 497, 1122, 1436, 1461, 3524, 3612, 4109, 5055
TspRI	CASTG	7 cut(s)	297, 1312, 1695, 3334, 3470, 4249, 4494
Tth111I	GACNNNGTC	1 cut(s)	464
Van91I	CCANNNNNTGG	2 cut(s)	2509, 4592
Vha464I	CTTAAG	3 cut(s)	401, 1295, 2285
VneI	GTGCAC	1 cut(s)	519
VpaK11BI	GGWCC	7 cut(s)	52, 1217, 1970, 2164, 2435, 3573, 5159
VspI	ATTAAT	2 cut(s)	2094, 3375
XapI	RAATTY	9 cut(s)	573, 1453, 1988, 2379, 2461, 2991, 3563, 3771, 4460
XceI	RCATGY	6 cut(s)	107, 207, 1510, 1514, 1952, 3865
XmaJI	CCTAGG	1 cut(s)	697
XmiI	GTMKAC	2 cut(s)	3479, 5444
XmnI	GAANNNNTTC	3 cut(s)	747, 2969, 3308
Zsp2I	ATGCAT	1 cut(s)	1512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.