Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002476

Physical Location & Seq

Genomic Coordinates Reverse (-)

10341309 .. 10346551

Gene Structure 5243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG124000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3849 bp

ATGTCATTCATGGGGCATAGAATCAAGATCATGCCATACTCAACTCTTCGCTTGAACTTATCTGTCACTTCACCTTACAATGCTGATTTTGATGGGGATGAAATGAACGTCCATGTTCCTCAGTCATTTGAAACTAGGGCAGAAGCTCTGGAGCTCATGATGGTGCCCAAATGCATTGTTTCCCCTCAGTCGAACCGGCCTGTAATGGGAATAGTCCAAGATACACTGTTAGGTGCTCGAAAAATCACAAAAAGGGATACCTTCATAGAGAAGGACGTTTTTATGAACATCTTGATGTGGTGGGAGGATTTTGACGGGAAAGTGCCTGCTCCTGCAATATTGAAGCCACGACCTCTTTGGACTGGGAAACAGGTTTTTAGTCTTATAATACCGAAACAGATAAATCTCCAGAGAACTTCAGCGTGGCACTCTGAATCAGAAAGTGGTAACATTACCCCTGGTGATACTTTCGTTAGAATAGAAAAGGGGGAGTTACTTTCTGGAACTCTCTGCAAAAGGGCACTTGGGACTTCTACAGGAAGTCTTATACATGTCATATGGGAAGAGGTTGGCCCAGATGCAGCCTCCAAATTCCTTAGTAATACCCAGTGGCTTGTGAATTACTGGCTGTTGCAGGATGGTTTTAGCATTGGAATTGGAGATACAATTGCTGATGCAGCAACAATGGAAAAGATCAATGTAACTATTTCCAAGGCAAAAAATGAAGTGAAAGAACTTATCAGTAAAGCCCAATCCAGGCAGCTGGAGGCTGAACCAGGACGAACTATGATGGAATCCTTTGAAAACAAAGTGAACCAGGTGTTGAATAGGGCTCGTGATGATGCTGGAAGTAGTGCCCAGAAGAGTTTATCTGAGAGTAACAATCTCAAGGCCATGGTCACAGCCGGATCGAAGGGAAGTTTTATCAATATATCGCAGATGACTGCTTGTGTGGGACAGCAAAATGTTGAGGGTAAGCGAATTCCGTATGGATTCACAGACCGGACTTTGCCCCATTTTACAAAAGACGATTATGGACCAGAAAGTCGTGGCTTTGTAGAGAATTCCTACCTGCGTGGATTAACTCCACAGGAGTTTTATTTTCATGCTATGGGTGGTAGGGAAGGCATTATTGATACTGCAGTTAAGACATCTGAGACTGGGTATATCCAGAGGAGACTGGTGAAGGCTATGGAGGATATTATGGTTAAATATGATGGGACTGTCAGAAATTCATTGGGGGATGTAATACAGTTTCTCTATGGGGAAGATGGAATGGACGCTGTTTGGTTAGAATCACAAAAGCTGGATTCTTTAAAGATGAAAAAATCAGAATTTAACAATACTTTCACTTTTGAGTTTGATGATAGAAATTGGAATCCGGACTATATGTTGCCTGAATATGTTGAGGATCTAAAAACTATTGGAGAGTTTCGCTGGGCATTGGACGCTGAAGTTTCAAAACTTGAAACTGATAGGATTCAACTTGGCACAGAGATTGCTGTCGCAGGTGATAATACTTGGCCGTTGCCTGTTAACCTGAAGAGGCTCATTTGGAATGCACAAAAAACTTTCAAAATTGACTTCCGAAGGACTTCTGATATGCAACCAATGGAAATTATAGAAGCTATTGATAATCTTCAAGAGAGGCTGAAGGTTGTTCCTGGTGATGACTTGTTAAGTGTTGAAGCTCAAAATAATGCTACACTCTTTTTCAACATTTTGCTTCGCAGCACTTTTGCTAGCAAAAGGGTGCTAAAAGAGTACAAGCTTACTCGTGAAGCATTTGAGTGGGTTATTGGGGAGGTAGAGGCACGCTTCCTACAATCACTTGTAGCACCTGGGGAAATGATTGGTATTGTTGCTGCACAATCTATTGGCGAGCCTGCCACTCAGATGACTCTCAATACCTTCCACTATGCCGGCGTAAGTGCAAAGAATGTTACTCTAGGTGTTCCAAGGTTGAAGGAAATTATTGATGTATCTAAGCGTATCAAAACACCATCTCTCTCTATCTTCTTGAAGCCTGAAGCTAATAAAACCAAAGAGAAGGCCAAGAATGTCCAGTGTGCTTTGGAATACACTAACCTTGGAAGTGTTACTCAAGCTACAGAATTGTGGTATGATCCGGACCCTATGAGCACAATAATTGAAGAGGATCTTGAATTTGTCCAGTCTTACTATGAAATGCCAGATGAAGAGGTTAGCGCTGAAAAAATATCACCTTGGTTGCTTCGCATAGAGATGAATCGTGAAATGATGGTGGATAAGAAACTGAGTATGGCTGACATTGCTGAGAAGATTAATTGTGAATATAGTGGTAAAATACAGTGTATCTTTAATGATGACAATTCTGAGAAGTTGATACTACGAATCCGTCTCATGAATGAAGAAGCTCCACATGAGGAAGTGAATGATCAATCTGAAGATGATGTTTTCCTGAAGATGATTGAGAGTAACATGCTTACAAAAATGGCTCTTCAAGGGATCCCAGAGATTAAAAAAGTGTTCATAAAGCATGGTAAAGTTAACAAGTTTGATCAGAATGAAGGGTTTATTGCGGAGCAAGAGTGGATGCTGGATACTGAAGGTGTTAATCTCTTAGCTGTCATGTGCCATGAGGATGTTGATGCCAAGAGAACAACAAGCAATGACTTGTATGAAATTATGGAAGTTCTTGGGATTGAGGCAGCTCGACGGGCATTGCTGGATGAGTTGCGTAATGTTATATCATTTGATGGATCCTATGTAAATTACCGGCACCTGGCCATTCTTTGTGAGACCATGACCTATCATGGCTACTTGATGGCCATCACTCGACATGGTATCAATCGAAAGGACACTGGTCCTATGATGCGATGCTCATTTGAACAAACAGTGGACATGCTGCTGGATGCTTCAGTTTTTGCAGAAACAGATCATTTGAGGGGTGTAACAGAAAACATAATGCTGGGCAAGCTGGCACCAATTGGCACTGGAGACTGTGCCCTGTATCTGAATGAAGAGATGTTACAAAATGCTATGGAAGTGCAGCTACCTGGTTATATGGATGGCCTTGATGTTGGCATGACACCATCCCATTCTCCATACCTTGAGAGCATACTGTCTCCTAGTTATTTGCGGAGTCCCAGTAATCCTTTTTCACCAATGTTGGATGCAGCACAGTTTTCTCCATACGTTAGGGGAATTCCCTTTTCTCCTACTTCATCTCCAGGCAACATCCCATCATCTCTTGGCTACTATCCGCCATCCTTTGTATACAGTCCCACCTCCCCATACTATAGCCCCACGTCACCAGGTTATAGTCCAACCAGTCCCCCCTATTCTCCTTCACGTCCATCTTTCACATCACCAGGTTATACTCCAAGCAGTCCTCCCTATTCTCCTTCACGTCCATCTTTCACATCACCAGGTTATAGTCCAACCAGTCCTGTCTATTCTCCTACAAGTCCATATTACTCACCGACCTCACCCGACTATAGCCCTATCTCTCCAACATCGACTCCTTATAGCCCAACTTCACCTGCATACGACCGAACACCACCGCCTTATGGCCTGACTTTACCTGCATATAGTCCCACTTCTCCTTTGTACACCCCAACGTCACCCTCCTACAGCCCGACCTCTCCAAGCTACAGCCCGACTTTCCCCAGATACACCCCCACTTCACCTTCCTACAGCCCCACATTGCCATCATACAGCCCCACATCGCCCTCCTACAGCCCCACATCGCCATCATACAGCCCCACATCCCCATCATACAGCTCTAGCTCCTCATACGATAGCCTGACATCTCCAGGTTACAACCCAACCTCTCCCAGTTATAGCCTGACATCTCTGTACAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0005773 GO:0005911 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030054 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0055029 GO:0055044 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_R

Protein Analysis

1282

Amino Acids

143.43

Weight (kDa)

5.06

Isoelectric Point (pI)

57.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_2	PF00623	1 - 55	1.5e-23	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3	PF04983	58 - 222	9.8e-55	RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4	PF05000	249 - 353	7.4e-39	RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5	PF04998	360 - 949	2.1e-105	RNA polymerase Rpb1, domain 5
RNA_pol_Rpb1_6	PF04992	426 - 610	7.6e-65	RNA polymerase Rpb1, domain 6
RNA_pol_Rpb1_7	PF04990	695 - 828	3.7e-50	RNA polymerase Rpb1, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35800 AT4G35800
fragaria_vesca	FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070
malus_domestica	MD02G1123200.v1.1 MD02G1123400.v1.1 MD02G1125500.v1.1 MD02G1125800.v1.1 MD15G1237200.v1.1
prunus_persica	Prupe.7G175200_v2.0.a1
pyrus_communis	pycom02g09610 pycom15g21110
rosa_chinensis	RchiOBHm_Chr2g0098321 RchiOBHm_Chr2g0098331
rosa_laevigata	RLG00000016790 RLG00000016791
rosa_multiflora	Rmu_co8358581.1_g000001 Rmu_sc0003434.1_g000008 Rmu_sc0023772.1_g000002 Rmu_sc0042863.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144060 Rroxscaffold_2G00144070
rosa_rugosa	Rorug02G0072000 Rorug02G0072000 Rorug02G0072100
rosa_samantha	Rh2AG119100 Rh2AG119200 Rh2BG122300 Rh2BG122400 Rh2CG123900 Rh2CG124000 Rh2DG123900 Rh2DG124000
rosa_wichuraiana	Rw2G009330 Rw2G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	386
AarI	CACCTGC	2 cut(s)	1499, 3532
AasI	GACNNNNNNGTC	1 cut(s)	1044
Acc36I	ACCTGC	4 cut(s)	1080, 1499, 3532, 3574
AccB1I	GGYRCC	3 cut(s)	163, 2760, 2962
AccI	GTMKAC	1 cut(s)	3258
AccIII	TCCGGA	2 cut(s)	1381, 2128
AciI	CCGC	4 cut(s)	2561, 3121, 3245, 3545
AclWI	GGATC	8 cut(s)	916, 1419, 2120, 2166, 2482, 2495, 2736, 2749
AcoI	YGGCCR	3 cut(s)	1523, 2766, 2808
AcsI	RAATTY	7 cut(s)	590, 981, 1063, 1231, 1334, 2165, 3186
AcuI	CTGAAG	9 cut(s)	402, 1473, 1562, 1673, 2049, 2445, 2462, 2607, 2883
AfaI	GTAC	3 cut(s)	1766, 3593, 3842
AfeI	AGCGCT	1 cut(s)	2209
AfiI	CCNNNNNNNGG	4 cut(s)	206, 756, 2764, 3551
AflIII	ACRYGT	1 cut(s)	550
AjiI	CACGTC	3 cut(s)	3291, 3335, 3392
Alw21I	GWGCWC	3 cut(s)	156, 238, 2144
Alw26I	GTCTC	6 cut(s)	1151, 1171, 2384, 2774, 2973, 3111
AlwI	GGATC	8 cut(s)	916, 1419, 2120, 2166, 2482, 2495, 2736, 2749
Aor13HI	TCCGGA	2 cut(s)	1381, 2128
Aor51HI	AGCGCT	1 cut(s)	2209
AoxI	GGCC	9 cut(s)	197, 571, 891, 1523, 2052, 2766, 2808, 3052, 3553
ApeKI	GCWGC	9 cut(s)	581, 677, 760, 1731, 1865, 2690, 2887, 3031, 3158
ApoI	RAATTY	7 cut(s)	590, 981, 1063, 1231, 1334, 2165, 3186
AseI	ATTAAT	1 cut(s)	2304
Asp700I	GAANNNNTTC	1 cut(s)	1594
AspLEI	GCGC	1 cut(s)	2210
AspS9I	GGNCC	4 cut(s)	572, 1037, 2131, 2846
AsuNHI	GCTAGC	1 cut(s)	1742
AvaII	GGWCC	3 cut(s)	1037, 2131, 2846
BaeGI	GKGCMC	4 cut(s)	168, 523, 859, 2989
BaeI	ACNNNNGTAYC	4 cut(s)	456, 489, 1128, 1161
BalI	TGGCCA	2 cut(s)	2768, 2810
BamHI	GGATCC	2 cut(s)	2487, 2741
BanI	GGYRCC	3 cut(s)	163, 2760, 2962
BanII	GRGCYC	2 cut(s)	156, 835
BarI	GAAGNNNNNNTAC	4 cut(s)	2994, 3018, 3026, 3050
BauI	CACGAG	2 cut(s)	834, 1776
Bbv12I	GWGCWC	3 cut(s)	156, 238, 2144
BbvI	GCAGC	9 cut(s)	593, 689, 772, 1743, 1852, 2702, 2874, 3043, 3170
BceAI	ACGGC	1 cut(s)	1510
BciVI	GTATCC	2 cut(s)	250, 2575
BclI	TGATCA	2 cut(s)	2416, 2539
BcoDI	GTCTC	6 cut(s)	1151, 1171, 2384, 2774, 2973, 3111
BfaI	CTAG	5 cut(s)	135, 1743, 1949, 3111, 3768
BfmI	CTRYAG	9 cut(s)	534, 1140, 2109, 3280, 3478, 3613, 3634, 3676, 3718
BfoI	RGCGCY	1 cut(s)	2211
BfuAI	ACCTGC	4 cut(s)	1080, 1499, 3532, 3574
BfuI	GTATCC	2 cut(s)	250, 2575
BisI	GCNGC	9 cut(s)	582, 678, 761, 1732, 1866, 2691, 2888, 3032, 3159
BlsI	GCNGC	9 cut(s)	583, 679, 762, 1733, 1867, 2692, 2889, 3033, 3160
Bme18I	GGWCC	3 cut(s)	1037, 2131, 2846
BmgBI	CACGTC	3 cut(s)	3291, 3335, 3392
BmgT120I	GGNCC	4 cut(s)	572, 1037, 2131, 2846
BmiI	GGNNCC	6 cut(s)	165, 2133, 2489, 2743, 2762, 2964
BmrI	ACTGGG	5 cut(s)	372, 601, 1170, 3123, 3813
BmsI	GCATC	9 cut(s)	568, 664, 832, 2565, 2620, 2844, 2849, 2884, 3145
BmtI	GCTAGC	1 cut(s)	1746
BmuI	ACTGGG	5 cut(s)	372, 601, 1170, 3123, 3813
BoxI	GACNNNNGTC	1 cut(s)	2844
BpmI	CTGGAG	6 cut(s)	170, 392, 785, 2997, 3195, 3780
BpuEI	CTTGAG	3 cut(s)	872, 2088, 3113
BsaBI	GATNNNNATC	1 cut(s)	2810
BsaI	GGTCTC	1 cut(s)	2774
BsaJI	CCNNGG	7 cut(s)	457, 711, 894, 1841, 1958, 2089, 2225
BsaWI	WCCGGW	3 cut(s)	1002, 1381, 2128
BsaXI	ACNNNNNCTCC	8 cut(s)	2555, 2585, 3115, 3145, 3193, 3223, 3487, 3517
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 756, 2764, 3551
Bse118I	RCCGGY	3 cut(s)	195, 1922, 2757
Bse3DI	GCAATG	4 cut(s)	2289, 2656, 2702, 3686
Bse8I	GATNNNNATC	1 cut(s)	2810
BseAI	TCCGGA	2 cut(s)	1381, 2128
BseDI	CCNNGG	7 cut(s)	457, 711, 894, 1841, 1958, 2089, 2225
BseJI	GATNNNNATC	1 cut(s)	2810
BseLI	CCNNNNNNNGG	4 cut(s)	206, 756, 2764, 3551
BseMI	GCAATG	4 cut(s)	2289, 2656, 2702, 3686
BseMII	CTCAG	8 cut(s)	134, 200, 864, 1146, 1907, 2267, 2286, 2346
BseRI	GAGGAG	2 cut(s)	1189, 3763
BseSI	GKGCMC	4 cut(s)	168, 523, 859, 2989
BseXI	GCAGC	9 cut(s)	593, 689, 772, 1743, 1852, 2702, 2874, 3043, 3170
BseYI	CCCAGC	2 cut(s)	1437, 2950
BsgI	GTGCAG	2 cut(s)	1851, 3050
Bsh1285I	CGRYCG	1 cut(s)	3535
BshFI	GGCC	9 cut(s)	199, 573, 893, 1525, 2054, 2768, 2810, 3054, 3555
BshNI	GGYRCC	3 cut(s)	163, 2760, 2962
BsiEI	CGRYCG	1 cut(s)	3535
BsiHKAI	GWGCWC	3 cut(s)	156, 238, 2144
BsiSI	CCGG	7 cut(s)	196, 906, 1003, 1382, 1923, 2129, 2758
BslFI	GGGAC	7 cut(s)	541, 969, 1234, 3111, 3249, 3300, 3561
BslI	CCNNNNNNNGG	4 cut(s)	206, 756, 2764, 3551
BsmAI	GTCTC	6 cut(s)	1151, 1171, 2384, 2774, 2973, 3111
BsmBI	CGTCTC	1 cut(s)	2384
BsmFI	GGGAC	7 cut(s)	541, 969, 1234, 3111, 3249, 3300, 3561
BsmI	GAATGC	1 cut(s)	1564
BsnI	GGCC	9 cut(s)	199, 573, 893, 1525, 2054, 2768, 2810, 3054, 3555
Bso31I	GGTCTC	1 cut(s)	2774
Bsp1286I	GDGCHC	8 cut(s)	156, 168, 238, 523, 835, 859, 2144, 2989
Bsp13I	TCCGGA	2 cut(s)	1381, 2128
Bsp1407I	TGTACA	2 cut(s)	3591, 3840
Bsp19I	CCATGG	1 cut(s)	894
BspACI	CCGC	4 cut(s)	2561, 3121, 3245, 3545
BspANI	GGCC	9 cut(s)	199, 573, 893, 1525, 2054, 2768, 2810, 3054, 3555
BspCNI	CTCAG	8 cut(s)	133, 199, 865, 1147, 1906, 2268, 2287, 2347
BspEI	TCCGGA	2 cut(s)	1381, 2128
BspHI	TCATGA	2 cut(s)	156, 2382
BspLI	GGNNCC	6 cut(s)	165, 2133, 2489, 2743, 2762, 2964
BspMAI	CTGCAG	1 cut(s)	1144
BspMI	ACCTGC	4 cut(s)	1080, 1499, 3532, 3574
BspOI	GCTAGC	1 cut(s)	1746
BspPI	GGATC	8 cut(s)	916, 1419, 2120, 2166, 2482, 2495, 2736, 2749
BspQI	GCTCTTC	1 cut(s)	2484
BspT107I	GGYRCC	3 cut(s)	163, 2760, 2962
BspTNI	GGTCTC	1 cut(s)	2774
BsrDI	GCAATG	4 cut(s)	2289, 2656, 2702, 3686
BsrFI	RCCGGY	3 cut(s)	195, 1922, 2757
BsrGI	TGTACA	2 cut(s)	3591, 3840
BssAI	RCCGGY	3 cut(s)	195, 1922, 2757
BssECI	CCNNGG	7 cut(s)	457, 711, 894, 1841, 1958, 2089, 2225
BssNAI	GTATAC	1 cut(s)	3259
BssSI	CACGAG	2 cut(s)	834, 1776
BssT1I	CCWWGG	5 cut(s)	711, 894, 1958, 2089, 2225
Bst1107I	GTATAC	1 cut(s)	3259
Bst2BI	CACGAG	2 cut(s)	834, 1776
Bst4CI	ACNGT	9 cut(s)	228, 1225, 1254, 2331, 2878, 2984, 3105, 3165, 3263
Bst6I	CTCTTC	8 cut(s)	51, 558, 857, 1538, 2148, 2193, 2484, 2997
BstAUI	TGTACA	2 cut(s)	3591, 3840
BstC8I	GCNNGC	8 cut(s)	327, 1744, 1816, 1883, 1887, 1924, 2957, 2961
BstDSI	CCRYGG	1 cut(s)	894
BstH2I	RGCGCY	1 cut(s)	2211
BstHHI	GCGC	1 cut(s)	2210
BstMAI	GTCTC	6 cut(s)	1151, 1171, 2384, 2774, 2973, 3111
BstMCI	CGRYCG	1 cut(s)	3535
BstMWI	GCNNNNNNNGC	5 cut(s)	677, 1448, 2291, 2699, 2956
BstNSI	RCATGY	3 cut(s)	554, 2464, 2887
BstPAI	GACNNNNGTC	1 cut(s)	2844
BstSFI	CTRYAG	9 cut(s)	534, 1140, 2109, 3280, 3478, 3613, 3634, 3676, 3718
BstSLI	GKGCMC	4 cut(s)	168, 523, 859, 2989
BstV1I	GCAGC	9 cut(s)	593, 689, 772, 1743, 1852, 2702, 2874, 3043, 3170
BstX2I	RGATCY	4 cut(s)	1411, 2158, 2487, 2741
BstXI	CCANNNNNNTGG	1 cut(s)	763
BstYI	RGATCY	4 cut(s)	1411, 2158, 2487, 2741
BstZ17I	GTATAC	1 cut(s)	3259
BsuI	GTATCC	2 cut(s)	250, 2575
BsuRI	GGCC	9 cut(s)	199, 573, 893, 1525, 2054, 2768, 2810, 3054, 3555
BtgI	CCRYGG	1 cut(s)	894
BtgZI	GCGATG	3 cut(s)	2872, 3693, 3714
BtrI	CACGTC	3 cut(s)	3291, 3335, 3392
BtsIMutI	CAGTG	7 cut(s)	224, 614, 2072, 2336, 2841, 2883, 2973
BveI	ACCTGC	4 cut(s)	1080, 1499, 3532, 3574
Cac8I	GCNNGC	8 cut(s)	327, 1744, 1816, 1883, 1887, 1924, 2957, 2961
CciI	TCATGA	2 cut(s)	156, 2382
CfoI	GCGC	1 cut(s)	2210
Cfr10I	RCCGGY	3 cut(s)	195, 1922, 2757
Cfr13I	GGNCC	4 cut(s)	572, 1037, 2131, 2846
CseI	GACGC	2 cut(s)	1289, 1457
CsiI	ACCWGGT	5 cut(s)	816, 3037, 3295, 3352, 3409
Csp6I	GTAC	3 cut(s)	1765, 3592, 3841
CviQI	GTAC	3 cut(s)	1765, 3592, 3841
DraI	TTTAAA	1 cut(s)	1317
DrdI	GACNNNNNNGTC	1 cut(s)	1044
DseDI	GACNNNNNNGTC	1 cut(s)	1044
EaeI	YGGCCR	3 cut(s)	1523, 2766, 2808
Eam1104I	CTCTTC	8 cut(s)	51, 558, 857, 1538, 2148, 2193, 2484, 2997
EarI	CTCTTC	8 cut(s)	51, 558, 857, 1538, 2148, 2193, 2484, 2997
EciI	GGCGGA	1 cut(s)	3234
Ecl136II	GAGCTC	1 cut(s)	154
Eco130I	CCWWGG	5 cut(s)	711, 894, 1958, 2089, 2225
Eco24I	GRGCYC	2 cut(s)	156, 835
Eco31I	GGTCTC	1 cut(s)	2774
Eco47I	GGWCC	3 cut(s)	1037, 2131, 2846
Eco47III	AGCGCT	1 cut(s)	2209
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	9 cut(s)	402, 1473, 1562, 1673, 2049, 2445, 2462, 2607, 2883
EcoICRI	GAGCTC	1 cut(s)	154
EcoRI	GAATTC	3 cut(s)	981, 1063, 3186
EcoT14I	CCWWGG	5 cut(s)	711, 894, 1958, 2089, 2225
EcoT22I	ATGCAT	1 cut(s)	176
EcoT38I	GRGCYC	2 cut(s)	156, 835
ErhI	CCWWGG	5 cut(s)	711, 894, 1958, 2089, 2225
Esp3I	CGTCTC	1 cut(s)	2384
FalI	AAGNNNNNCTT	2 cut(s)	2145, 2177
FaqI	GGGAC	7 cut(s)	541, 969, 1234, 3111, 3249, 3300, 3561
FauNDI	CATATG	1 cut(s)	557
FbaI	TGATCA	2 cut(s)	2416, 2539
FblI	GTMKAC	1 cut(s)	3258
Fnu4HI	GCNGC	9 cut(s)	582, 678, 761, 1732, 1866, 2691, 2888, 3032, 3159
FriOI	GRGCYC	2 cut(s)	156, 835
Fsp4HI	GCNGC	9 cut(s)	582, 678, 761, 1732, 1866, 2691, 2888, 3032, 3159
FspBI	CTAG	5 cut(s)	135, 1743, 1949, 3111, 3768
GlaI	GCGC	1 cut(s)	2209
GluI	GCNGC	9 cut(s)	582, 678, 761, 1732, 1866, 2691, 2888, 3032, 3159
GsaI	CCCAGC	2 cut(s)	1441, 2954
GsuI	CTGGAG	6 cut(s)	170, 392, 785, 2997, 3195, 3780
HaeII	RGCGCY	1 cut(s)	2211
HaeIII	GGCC	9 cut(s)	199, 573, 893, 1525, 2054, 2768, 2810, 3054, 3555
HapII	CCGG	7 cut(s)	196, 906, 1003, 1382, 1923, 2129, 2758
HgaI	GACGC	2 cut(s)	1289, 1457
HhaI	GCGC	1 cut(s)	2210
Hin6I	GCGC	1 cut(s)	2208
HinP1I	GCGC	1 cut(s)	2208
HincII	GTYRAC	2 cut(s)	1537, 2530
HindII	GTYRAC	2 cut(s)	1537, 2530
HindIII	AAGCTT	1 cut(s)	1769
HpaI	GTTAAC	2 cut(s)	1537, 2530
HpaII	CCGG	7 cut(s)	196, 906, 1003, 1382, 1923, 2129, 2758
Hpy166II	GTNNAC	6 cut(s)	814, 1537, 2530, 2881, 3259, 3594
Hpy8I	GTNNAC	6 cut(s)	814, 1537, 2530, 2881, 3259, 3594
Hpy99I	CGWCG	1 cut(s)	2700
HpyCH4III	ACNGT	9 cut(s)	228, 1225, 1254, 2331, 2878, 2984, 3105, 3165, 3263
HpyCH4IV	ACGT	7 cut(s)	108, 276, 3177, 3290, 3334, 3391, 3602
HpyF10VI	GCNNNNNNNGC	5 cut(s)	677, 1448, 2291, 2699, 2956
HpySE526I	ACGT	7 cut(s)	108, 276, 3177, 3290, 3334, 3391, 3602
HspAI	GCGC	1 cut(s)	2208
Kpn2I	TCCGGA	2 cut(s)	1381, 2128
KroI	GCCGGC	1 cut(s)	1922
KroNI	GCCGGC	1 cut(s)	1924
Ksp22I	TGATCA	2 cut(s)	2416, 2539
KspAI	GTTAAC	2 cut(s)	1537, 2530
LguI	GCTCTTC	1 cut(s)	2484
LmnI	GCTCC	5 cut(s)	151, 334, 2401, 2563, 3776
Lsp1109I	GCAGC	9 cut(s)	593, 689, 772, 1743, 1852, 2702, 2874, 3043, 3170
LweI	GCATC	9 cut(s)	568, 664, 832, 2565, 2620, 2844, 2849, 2884, 3145
MabI	ACCWGGT	5 cut(s)	816, 3037, 3295, 3352, 3409
MaeI	CTAG	5 cut(s)	135, 1743, 1949, 3111, 3768
MaeII	ACGT	7 cut(s)	108, 276, 3177, 3290, 3334, 3391, 3602
MfeI	CAATTG	2 cut(s)	666, 2967
MflI	RGATCY	4 cut(s)	1411, 2158, 2487, 2741
MhlI	GDGCHC	8 cut(s)	156, 168, 238, 523, 835, 859, 2144, 2989
MlsI	TGGCCA	2 cut(s)	2768, 2810
MluNI	TGGCCA	2 cut(s)	2768, 2810
MlyI	GAGTC	3 cut(s)	1894, 3133, 3496
MmeI	TCCRAC	4 cut(s)	3132, 3332, 3446, 3518
Mox20I	TGGCCA	2 cut(s)	2768, 2810
Mph1103I	ATGCAT	1 cut(s)	176
MroI	TCCGGA	2 cut(s)	1381, 2128
MroNI	GCCGGC	1 cut(s)	1922
MroXI	GAANNNNTTC	1 cut(s)	1594
MscI	TGGCCA	2 cut(s)	2768, 2810
MslI	CAYNNNNRTG	6 cut(s)	161, 293, 1789, 1895, 2243, 2622
Msp20I	TGGCCA	2 cut(s)	2768, 2810
MspA1I	CMGCKG	1 cut(s)	763
MspI	CCGG	7 cut(s)	196, 906, 1003, 1382, 1923, 2129, 2758
MunI	CAATTG	2 cut(s)	666, 2967
Mva1269I	GAATGC	1 cut(s)	1564
MwoI	GCNNNNNNNGC	5 cut(s)	677, 1448, 2291, 2699, 2956
NaeI	GCCGGC	1 cut(s)	1924
NcoI	CCATGG	1 cut(s)	894
NdeI	CATATG	1 cut(s)	557
NgoMIV	GCCGGC	1 cut(s)	1922
NheI	GCTAGC	1 cut(s)	1742
NlaIV	GGNNCC	6 cut(s)	165, 2133, 2489, 2743, 2762, 2964
NmuCI	GTSAC	4 cut(s)	64, 898, 3291, 3603
NsiI	ATGCAT	1 cut(s)	176
NspI	RCATGY	3 cut(s)	554, 2464, 2887
PagI	TCATGA	2 cut(s)	156, 2382
PaqCI	CACCTGC	2 cut(s)	1499, 3532
PciI	ACATGT	1 cut(s)	550
PciSI	GCTCTTC	1 cut(s)	2484
PctI	GAATGC	1 cut(s)	1564
PdiI	GCCGGC	1 cut(s)	1924
PdmI	GAANNNNTTC	1 cut(s)	1594
PkrI	GCNGC	9 cut(s)	583, 679, 762, 1733, 1867, 2692, 2889, 3033, 3160
PleI	GAGTC	3 cut(s)	1894, 3132, 3496
PpsI	GAGTC	3 cut(s)	1894, 3132, 3496
PscI	ACATGT	1 cut(s)	550
PshAI	GACNNNNGTC	1 cut(s)	2844
PshBI	ATTAAT	1 cut(s)	2304
PsiI	TTATAA	1 cut(s)	386
Psp124BI	GAGCTC	1 cut(s)	156
PspFI	CCCAGC	2 cut(s)	1437, 2950
PspN4I	GGNNCC	6 cut(s)	165, 2133, 2489, 2743, 2762, 2964
PspPI	GGNCC	4 cut(s)	572, 1037, 2131, 2846
PstI	CTGCAG	1 cut(s)	1144
PsuI	RGATCY	4 cut(s)	1411, 2158, 2487, 2741
PvuII	CAGCTG	1 cut(s)	763
RsaI	GTAC	3 cut(s)	1766, 3593, 3842
RsaNI	GTAC	3 cut(s)	1765, 3592, 3841
RseI	CAYNNNNRTG	6 cut(s)	161, 293, 1789, 1895, 2243, 2622
SacI	GAGCTC	1 cut(s)	156
SapI	GCTCTTC	1 cut(s)	2484
SatI	GCNGC	9 cut(s)	582, 678, 761, 1732, 1866, 2691, 2888, 3032, 3159
Sau96I	GGNCC	4 cut(s)	572, 1037, 2131, 2846
SchI	GAGTC	3 cut(s)	1894, 3133, 3496
SduI	GDGCHC	8 cut(s)	156, 168, 238, 523, 835, 859, 2144, 2989
SexAI	ACCWGGT	5 cut(s)	816, 3037, 3295, 3352, 3409
SfaNI	GCATC	9 cut(s)	568, 664, 832, 2565, 2620, 2844, 2849, 2884, 3145
SfcI	CTRYAG	9 cut(s)	534, 1140, 2109, 3280, 3478, 3613, 3634, 3676, 3718
SinI	GGWCC	3 cut(s)	1037, 2131, 2846
SmiMI	CAYNNNNRTG	6 cut(s)	161, 293, 1789, 1895, 2243, 2622
SmlI	CTYRAG	3 cut(s)	887, 2103, 3092
SmoI	CTYRAG	3 cut(s)	887, 2103, 3092
SsiI	CCGC	4 cut(s)	2561, 3121, 3245, 3545
SspI	AATATT	1 cut(s)	339
SspMI	CTAG	5 cut(s)	135, 1743, 1949, 3111, 3768
SstI	GAGCTC	1 cut(s)	156
StyI	CCWWGG	5 cut(s)	711, 894, 1958, 2089, 2225
TaaI	ACNGT	9 cut(s)	228, 1225, 1254, 2331, 2878, 2984, 3105, 3165, 3263
TaiI	ACGT	7 cut(s)	111, 279, 3180, 3293, 3337, 3394, 3605
TaqI	TCGA	7 cut(s)	191, 238, 911, 2695, 2818, 2833, 3500
TaqII	GACCGA	1 cut(s)	3549
TatI	WGTACW	3 cut(s)	1764, 3591, 3840
TscAI	CASTG	7 cut(s)	231, 614, 2072, 2336, 2848, 2883, 2980
TseFI	GTSAC	4 cut(s)	64, 898, 3291, 3603
TseI	GCWGC	9 cut(s)	581, 677, 760, 1731, 1865, 2690, 2887, 3031, 3158
Tsp45I	GTSAC	4 cut(s)	64, 898, 3291, 3603
TspGWI	ACGGA	2 cut(s)	975, 2366
TspRI	CASTG	7 cut(s)	231, 614, 2072, 2336, 2848, 2883, 2980
VpaK11BI	GGWCC	3 cut(s)	1037, 2131, 2846
VspI	ATTAAT	1 cut(s)	2304
XapI	RAATTY	7 cut(s)	590, 981, 1063, 1231, 1334, 2165, 3186
XceI	RCATGY	3 cut(s)	554, 2464, 2887
XcmI	CCANNNNNNNNNTGG	1 cut(s)	354
XmiI	GTMKAC	1 cut(s)	3258
XmnI	GAANNNNTTC	1 cut(s)	1594
XspI	CTAG	5 cut(s)	135, 1743, 1949, 3111, 3768
Zsp2I	ATGCAT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.