Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002476

Physical Location & Seq

Genomic Coordinates Reverse (-)

10023138 .. 10031430

Gene Structure 8293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1123200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2979 bp

ATGTCTCTTATGGGGCACAAAGTCAAGATCATGCCGTACTCAACATTTCGCTTGAATCTGTCTGTGACCTTGCCATATAATGCTGACTTTGATGGGGATGAAATGAACATGCACGTACCCCAGTCCTTTGAAACCAGGGCTGAAATATCGGAGCTCATGATGGTACCAAAATGCATCGTCTCACCTCAGTCAAATCGACCTGTTATGGGAATCGTCCAGGACACGCTTTTAGGTTGTCGTAAGATGACAAAGAGGGATACCTTCATAGAGAAGGATGTCTTCATGAATATTCTGATGTGGTGTGAGGATTTTGATGGAAAAGTTCCTGCTCCAGCAGTTTTGAAGCCCCGGCCATTATGGACGGGGAAGCAAGTATTCAATCTTATAATTCCGAAACAGATAAATATGCAAAGAACATCTTCATGGCACTCAGAAGCAGAGAGTGGGAACATAACCCCAGGAGACACTTTAGTTAGAATTGAAAAAGGTGAACTGCTTTCGGGAACGCTGTGCGAGAAGACTCTTGGGACTTCTACAGGAAGTCTTATCCATGTTATATGGGAAGAGGTTGGTCCAGATGCAGCGAGCAAGTTCCTCGGTCATACCCAATGGCTTGTGAATTACTGGCTGCTGCAGAATGCTTTTAGCATGGGAATTGGAGATACAATTGCTGATGCTGCAGCAATGGAGAAAATCAATGAAACAATATCAAAGGCAAAAAATGAAGTGAAAGATCTTATAATTAAAGCCCAATCCAAGCAACTTGAGGCTGAACCTGGACGAACTATGATGGAATCTTTCGAAAACAAAGTCAACCAGGTATTGAATAGGGCTCGTGATGACGCTGGAAGTAGTGCTCAAAAGAGTTTGTCCGAAAGCAACAATCTTAAGGCCATGGTTACGGCAGGGTCCAAGGGGAGTTTTATCAACATATCACAGATAACTGCTTGTGTGGGACAGCAGAACGTTGAGGGTAAACGAATCCCATATGGGTTCAGGGACCGGACATTGCCCCACTTTACCAAAGATGACTATGGACCGGAAAGTCGTGGATTTGTGGAGAACTCATACTGGCGCGGACTAACTCCACAGGGGTTCTTTTTTCATGCTATGGGTGGTAGAGAAGGTCTTATTGATACTGCAGTTAAGACATTTGAGACTGGGTACATCCAAAGGAGACTGGTGAAGGCTATGGAGGATATTATGATGAAACATGATGGCACAGTACGTAATTCTTTGGGTGATGTCATTCAGTTTCTCTACGGGGAAGATGGAATGGATGCTGTTTGGATAGAATCACAGAAGCTGGATTCTTTAAGAATGAAAAAATCAGAGTTTGATCAGACTTTTAAGTATGAGGTGGACGAAAATTGGGATCCAGACTACATTTTGCATCAACATGCTGATGATCTCAAAGATAATATAGAGTTTCGCAATGTGTTCGAAGCAGAATTTGAGAAACTTGAAAGAGAGAGATTACTTCTTGGAACAGAGATTGCAGTCACCGGTTATAATTCTTGGCCATTACCTGTTAACTTGAAGAGGCTTATTTGGAATGCACAAAAAACTTTTAAGATTGACTTCCGGAAGACTTCTGATATGCACCCGATGCAAATTGTGGATGCTATTGATAAGCTGACGGAGAGACTGAAAGTTGTTCCTGGTGATGACTTGTTGAGTGTCGAAGCTCAAAAGAATGCTACATTGTTTTTCAACATTCTACTTCGCAGCACTTTCGCAAGCAAATGGGTGTTGGATGAGTACAGGCTTACTCAAGAAGCATTTGATTGGATTAATAGGGAGATAGAGTCACGCTTCCGGCAATCAATCGTAGCACCTGGAGAAATGATTGGTACTGTTGCTGCACAATCTATTGGAGAGCCTGCTACTCAGATGACTCTCAATACTTTCCATTATGCTGGTGTGAGTGCAAAGAATGTTACCCTAGGTGTTCCCAGGTTGAAGGAAATTATCAACGTCGCTAAGAAAATCAAAACGCCTTCTCTGTCTGTCTACTTAAAGCCGGAAGCTAGTAAAACCAAGGAGAGGGCTAAAAATGTCCAGTGTAATTTGGAATACACCACTCTCCGAAATGTTATTCATGCCACAGAAGTATGGTACGATCCAGACCCCATGTGCACAATAATTGAAGAGGATGTTGAACTTGTGAATACCAACTGGGAAATGCCAGATGAAGAGGTTAATTCAGATAGAATATCTCCTTGGTTGCTTCGCATTGAGTTGAATCGCGAAATGATGGTGGATAAGAGGTTGAGCATGGCCGACATTGCTGAGAAGATTAACAATGAATTTGGCGATGATTTAAATTGTATCTTCCTTAATGACAACGCTGAAAAGTTGATCCTTAGAGTGCACATAATGAATGCTGAAGCTCCACAAGCGGAGTTAGGCGACGATTCTGAAGATGAGATTTTCTTGAAGAAGATTGAGAGCAACATGTTGACAGAGATGGCTATTCGTGGCATCCCGGAGATTAAAAAAGTGTTCGTTAAGCACGGTAAAGTTAACAAGTTCGATCAGAACGAAGGATTTAAAGCAGAGCAAGAGTGGATGCTGGATACAGAAGGCGTTAATCTTCTTGCCGTCATGGGCCATGAAGAGGTTGATGCCAGGCGCACTACTAGTAATCACTTGCCCGAAATTCTTGAGGTTCTTGGAATTGAGGCAGCTCGTCGGTCACTGCTGGATGAGTTGCGTGTTGTCATATCTTTTGATGGGTCTTATGTGAACTATCGGCATCTGGCGATCCTCTCTGATCTCATGACATATCGTGGACACTTAATCTTCAACCGCAATGTCACTGGTCCCCTGATGCGCTGCTCATTTGAACAGACGGTTGATATTCTACTCGATGCGGCCATGTTTGGGGAAACAGATTATTTGAGAAGGGTCACGGAAAATATAATGCTAGGTCAGCTTGCACCGATCGGAACAGGAGACTGCTTTGTTTCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0005773 GO:0005911 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030054 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0055029 GO:0055044 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_R

Protein Analysis

993

Amino Acids

112.79

Weight (kDa)

5.23

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_2	PF00623	1 - 55	6.1e-24	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3	PF04983	58 - 222	1e-51	RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4	PF05000	250 - 353	3.4e-39	RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5	PF04998	360 - 936	1.5e-96	RNA polymerase Rpb1, domain 5
RNA_pol_Rpb1_6	PF04992	426 - 609	7e-63	RNA polymerase Rpb1, domain 6
RNA_pol_Rpb1_7	PF04990	694 - 827	3e-47	RNA polymerase Rpb1, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35800 AT4G35800
fragaria_vesca	FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070
malus_domestica	MD02G1123200.v1.1 MD02G1123400.v1.1 MD02G1125500.v1.1 MD02G1125800.v1.1 MD15G1237200.v1.1
prunus_persica	Prupe.7G175200_v2.0.a1
pyrus_communis	pycom02g09610 pycom15g21110
rosa_chinensis	RchiOBHm_Chr2g0098321 RchiOBHm_Chr2g0098331
rosa_laevigata	RLG00000016790 RLG00000016791
rosa_multiflora	Rmu_co8358581.1_g000001 Rmu_sc0003434.1_g000008 Rmu_sc0023772.1_g000002 Rmu_sc0042863.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144060 Rroxscaffold_2G00144070
rosa_rugosa	Rorug02G0072000 Rorug02G0072000 Rorug02G0072100
rosa_samantha	Rh2AG119100 Rh2AG119200 Rh2BG122300 Rh2BG122400 Rh2CG123900 Rh2CG124000 Rh2DG123900 Rh2DG124000
rosa_wichuraiana	Rw2G009330 Rw2G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	386, 740, 1512
AasI	GACNNNNNNGTC	1 cut(s)	1044
Acc65I	GGTACC	1 cut(s)	163
AccB1I	GGYRCC	1 cut(s)	163
AccI	GTMKAC	1 cut(s)	2013
AccII	CGCG	2 cut(s)	1077, 2250
AccIII	TCCGGA	1 cut(s)	1584
AciI	CCGC	4 cut(s)	1077, 2402, 2812, 2876
AclI	AACGTT	1 cut(s)	966
AclWI	GGATC	5 cut(s)	1370, 1383, 2117, 2356, 2761
AcoI	YGGCCR	4 cut(s)	350, 1520, 2280, 2877
AcsI	RAATTY	3 cut(s)	1451, 2309, 2661
AcuI	CTGAAG	2 cut(s)	2409, 2442
AfaI	GTAC	8 cut(s)	38, 117, 165, 1166, 1227, 1763, 1855, 2120
AfiI	CCNNNNNNNGG	4 cut(s)	206, 2046, 2620, 2886
AflII	CTTAAG	1 cut(s)	887
AflIII	ACRYGT	1 cut(s)	2457
AgeI	ACCGGT	1 cut(s)	1505
AhlI	ACTAGT	1 cut(s)	2642
AjnI	CCWGG	9 cut(s)	134, 216, 457, 775, 816, 1660, 1837, 1955, 2630
AjuI	GAANNNNNNNTTGG	2 cut(s)	2206, 2238
AluBI	AGCT	8 cut(s)	154, 1306, 1636, 1688, 2030, 2393, 2690, 2938
AluI	AGCT	8 cut(s)	154, 1306, 1636, 1688, 2030, 2393, 2690, 2938
Alw21I	GWGCWC	4 cut(s)	156, 859, 2141, 2376
Alw26I	GTCTC	7 cut(s)	9, 184, 456, 1151, 1171, 1639, 2952
Alw44I	GTGCAC	2 cut(s)	2137, 2372
AlwI	GGATC	5 cut(s)	1370, 1383, 2117, 2356, 2761
AlwNI	CAGNNNCTG	1 cut(s)	1306
Aor13HI	TCCGGA	1 cut(s)	1584
AoxI	GGCC	6 cut(s)	350, 891, 1520, 2280, 2611, 2877
ApaLI	GTGCAC	2 cut(s)	2137, 2372
ApeKI	GCWGC	9 cut(s)	581, 628, 631, 677, 680, 1728, 1862, 2687, 2838
ApoI	RAATTY	3 cut(s)	1451, 2309, 2661
ArsI	GACNNNNNNTTYG	2 cut(s)	795, 827
AseI	ATTAAT	1 cut(s)	1794
AsiGI	ACCGGT	1 cut(s)	1505
Asp700I	GAANNNNTTC	1 cut(s)	418
Asp718I	GGTACC	1 cut(s)	163
AspA2I	CCTAGG	1 cut(s)	1945
AspLEI	GCGC	3 cut(s)	1077, 2637, 2838
AspS9I	GGNCC	6 cut(s)	572, 909, 1000, 1037, 2611, 2825
AsuC2I	CCSGG	2 cut(s)	349, 2489
AsuHPI	GGTGA	6 cut(s)	174, 500, 1195, 1253, 1495, 1676
AsuII	TTCGAA	2 cut(s)	801, 1443
AvaII	GGWCC	5 cut(s)	572, 909, 1000, 1037, 2825
AvrII	CCTAGG	1 cut(s)	1945
BaeGI	GKGCMC	3 cut(s)	18, 2141, 2376
BaeI	ACNNNNGTAYC	2 cut(s)	1128, 1161
BalI	TGGCCA	1 cut(s)	1522
BamHI	GGATCC	1 cut(s)	1375
BanI	GGYRCC	1 cut(s)	163
BanII	GRGCYC	2 cut(s)	156, 835
BauI	CACGAG	1 cut(s)	834
BbsI	GAAGAC	3 cut(s)	271, 524, 1595
Bbv12I	GWGCWC	4 cut(s)	156, 859, 2141, 2376
BbvI	GCAGC	9 cut(s)	593, 615, 618, 664, 692, 1740, 1849, 2699, 2825
BccI	CCATC	9 cut(s)	86, 154, 308, 784, 1211, 1265, 2251, 2464, 2729
BceAI	ACGGC	3 cut(s)	19, 918, 2588
BcgI	CGANNNNNNTGC	6 cut(s)	577, 611, 1423, 1457, 1717, 1751
BciT130I	CCWGG	9 cut(s)	136, 218, 459, 777, 818, 1662, 1839, 1957, 2632
BciVI	GTATCC	2 cut(s)	250, 2572
BclI	TGATCA	1 cut(s)	1339
BcnI	CCSGG	2 cut(s)	349, 2489
BcoDI	GTCTC	7 cut(s)	9, 184, 456, 1151, 1171, 1639, 2952
BcuI	ACTAGT	1 cut(s)	2642
BfaI	CTAG	4 cut(s)	1946, 2031, 2643, 2930
BfmI	CTRYAG	4 cut(s)	534, 632, 678, 1140
BfrI	CTTAAG	1 cut(s)	887
BfuI	GTATCC	2 cut(s)	250, 2572
BglII	AGATCT	1 cut(s)	733
BlnI	CCTAGG	1 cut(s)	1945
Bme18I	GGWCC	5 cut(s)	572, 909, 1000, 1037, 2825
BmgT120I	GGNCC	6 cut(s)	572, 909, 1000, 1037, 2611, 2825
BmiI	GGNNCC	5 cut(s)	165, 910, 1001, 1377, 2827
BmrI	ACTGGG	3 cut(s)	115, 1170, 2188
BmuI	ACTGGG	3 cut(s)	115, 1170, 2188
BpiI	GAAGAC	3 cut(s)	271, 524, 1595
BpmI	CTGGAG	2 cut(s)	315, 1860
Bpu14I	TTCGAA	2 cut(s)	801, 1443
BpuEI	CTTGAG	3 cut(s)	785, 1758, 2687
BpuMI	CCSGG	2 cut(s)	349, 2489
BsaAI	YACGTR	2 cut(s)	115, 1229
BsaWI	WCCGGW	4 cut(s)	1002, 1039, 1505, 1584
BsaXI	ACNNNNNCTCC	2 cut(s)	1793, 1823
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 2046, 2620, 2886
Bse118I	RCCGGY	1 cut(s)	1505
Bse1I	ACTGG	8 cut(s)	121, 629, 1076, 1165, 1185, 2062, 2183, 2827
Bse3DI	GCAATG	5 cut(s)	690, 1007, 1441, 2286, 2821
BseAI	TCCGGA	1 cut(s)	1584
BseBI	CCWGG	9 cut(s)	136, 218, 459, 777, 818, 1662, 1839, 1957, 2632
BseLI	CCNNNNNNNGG	4 cut(s)	206, 2046, 2620, 2886
BseMI	GCAATG	5 cut(s)	690, 1007, 1441, 2286, 2821
BseMII	CTCAG	4 cut(s)	200, 444, 1904, 2283
BseNI	ACTGG	8 cut(s)	121, 629, 1076, 1165, 1185, 2062, 2183, 2827
BseSI	GKGCMC	3 cut(s)	18, 2141, 2376
BseXI	GCAGC	9 cut(s)	593, 615, 618, 664, 692, 1740, 1849, 2699, 2825
BsgI	GTGCAG	1 cut(s)	1848
Bsh1236I	CGCG	2 cut(s)	1077, 2250
Bsh1285I	CGRYCG	1 cut(s)	2949
BshFI	GGCC	6 cut(s)	352, 893, 1522, 2282, 2613, 2879
BshNI	GGYRCC	1 cut(s)	163
BshTI	ACCGGT	1 cut(s)	1505
BsiEI	CGRYCG	1 cut(s)	2949
BsiHKAI	GWGCWC	4 cut(s)	156, 859, 2141, 2376
BsiSI	CCGG	8 cut(s)	349, 1003, 1040, 1506, 1585, 1819, 2024, 2489
BslFI	GGGAC	4 cut(s)	541, 969, 1013, 2811
BslI	CCNNNNNNNGG	4 cut(s)	206, 2046, 2620, 2886
BsmAI	GTCTC	7 cut(s)	9, 184, 456, 1151, 1171, 1639, 2952
BsmBI	CGTCTC	1 cut(s)	184
BsmFI	GGGAC	4 cut(s)	541, 969, 1013, 2811
BsmI	GAATGC	4 cut(s)	643, 1561, 1702, 2389
BsnI	GGCC	6 cut(s)	352, 893, 1522, 2282, 2613, 2879
Bsp119I	TTCGAA	2 cut(s)	801, 1443
Bsp1286I	GDGCHC	6 cut(s)	18, 156, 835, 859, 2141, 2376
Bsp13I	TCCGGA	1 cut(s)	1584
Bsp19I	CCATGG	1 cut(s)	894
Bsp68I	TCGCGA	1 cut(s)	2250
BspACI	CCGC	4 cut(s)	1077, 2402, 2812, 2876
BspANI	GGCC	6 cut(s)	352, 893, 1522, 2282, 2613, 2879
BspCNI	CTCAG	4 cut(s)	199, 443, 1903, 2284
BspEI	TCCGGA	1 cut(s)	1584
BspFNI	CGCG	2 cut(s)	1077, 2250
BspHI	TCATGA	3 cut(s)	156, 282, 2781
BspLI	GGNNCC	5 cut(s)	165, 910, 1001, 1377, 2827
BspMAI	CTGCAG	3 cut(s)	636, 682, 1144
BspPI	GGATC	5 cut(s)	1370, 1383, 2117, 2356, 2761
BspT104I	TTCGAA	2 cut(s)	801, 1443
BspT107I	GGYRCC	1 cut(s)	163
BspTI	CTTAAG	1 cut(s)	887
BsrDI	GCAATG	5 cut(s)	690, 1007, 1441, 2286, 2821
BsrFI	RCCGGY	1 cut(s)	1505
BsrI	ACTGG	8 cut(s)	121, 629, 1076, 1165, 1185, 2062, 2183, 2827
BssAI	RCCGGY	1 cut(s)	1505
BssSI	CACGAG	1 cut(s)	834
BssT1I	CCWWGG	5 cut(s)	894, 912, 1945, 2040, 2222
Bst2BI	CACGAG	1 cut(s)	834
Bst2UI	CCWGG	9 cut(s)	136, 218, 459, 777, 818, 1662, 1839, 1957, 2632
Bst4CI	ACNGT	4 cut(s)	1225, 1858, 2519, 2857
Bst6I	CTCTTC	5 cut(s)	558, 1535, 2145, 2190, 2613
BstAFI	CTTAAG	1 cut(s)	887
BstAPI	GCANNNNNTGC	1 cut(s)	1609
BstBAI	YACGTR	2 cut(s)	115, 1229
BstBI	TTCGAA	2 cut(s)	801, 1443
BstC8I	GCNNGC	4 cut(s)	586, 1741, 1884, 2940
BstDEI	CTNAG	6 cut(s)	186, 430, 1890, 1983, 2292, 2366
BstDSI	CCRYGG	1 cut(s)	894
BstFNI	CGCG	2 cut(s)	1077, 2250
BstHHI	GCGC	3 cut(s)	1077, 2637, 2838
BstMAI	GTCTC	7 cut(s)	9, 184, 456, 1151, 1171, 1639, 2952
BstMCI	CGRYCG	1 cut(s)	2949
BstMWI	GCNNNNNNNGC	5 cut(s)	677, 1609, 2288, 2399, 2935
BstNI	CCWGG	9 cut(s)	136, 218, 459, 777, 818, 1662, 1839, 1957, 2632
BstNSI	RCATGY	3 cut(s)	112, 1403, 2461
BstSFI	CTRYAG	4 cut(s)	534, 632, 678, 1140
BstSLI	GKGCMC	3 cut(s)	18, 2141, 2376
BstSNI	TACGTA	1 cut(s)	1229
BstUI	CGCG	2 cut(s)	1077, 2250
BstV1I	GCAGC	9 cut(s)	593, 615, 618, 664, 692, 1740, 1849, 2699, 2825
BstV2I	GAAGAC	3 cut(s)	271, 524, 1595
BstX2I	RGATCY	2 cut(s)	733, 1375
BstXI	CCANNNNNNTGG	1 cut(s)	1919
BstYI	RGATCY	2 cut(s)	733, 1375
BsuI	GTATCC	2 cut(s)	250, 2572
BsuRI	GGCC	6 cut(s)	352, 893, 1522, 2282, 2613, 2879
BtgI	CCRYGG	1 cut(s)	894
BtgZI	GCGATG	1 cut(s)	2331
BtsI	GCAGTG	1 cut(s)	2699
BtsIMutI	CAGTG	3 cut(s)	2069, 2699, 2820
BtuMI	TCGCGA	1 cut(s)	2250
Cac8I	GCNNGC	4 cut(s)	586, 1741, 1884, 2940
CaiI	CAGNNNCTG	1 cut(s)	1306
CciI	TCATGA	3 cut(s)	156, 282, 2781
CfoI	GCGC	3 cut(s)	1077, 2637, 2838
Cfr10I	RCCGGY	1 cut(s)	1505
Cfr13I	GGNCC	6 cut(s)	572, 909, 1000, 1037, 2611, 2825
CseI	GACGC	1 cut(s)	851
CsiI	ACCWGGT	1 cut(s)	816
Csp6I	GTAC	8 cut(s)	37, 116, 164, 1165, 1226, 1762, 1854, 2119
CspAI	ACCGGT	1 cut(s)	1505
CviQI	GTAC	8 cut(s)	37, 116, 164, 1165, 1226, 1762, 1854, 2119
DdeI	CTNAG	6 cut(s)	186, 430, 1890, 1983, 2292, 2366
DraI	TTTAAA	2 cut(s)	2325, 2554
DrdI	GACNNNNNNGTC	1 cut(s)	1044
DseDI	GACNNNNNNGTC	1 cut(s)	1044
EaeI	YGGCCR	4 cut(s)	350, 1520, 2280, 2877
Eam1104I	CTCTTC	5 cut(s)	558, 1535, 2145, 2190, 2613
EarI	CTCTTC	5 cut(s)	558, 1535, 2145, 2190, 2613
Ecl136II	GAGCTC	1 cut(s)	154
Eco105I	TACGTA	1 cut(s)	1229
Eco130I	CCWWGG	5 cut(s)	894, 912, 1945, 2040, 2222
Eco24I	GRGCYC	2 cut(s)	156, 835
Eco47I	GGWCC	5 cut(s)	572, 909, 1000, 1037, 2825
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	2 cut(s)	2409, 2442
EcoICRI	GAGCTC	1 cut(s)	154
EcoRII	CCWGG	9 cut(s)	134, 216, 457, 775, 816, 1660, 1837, 1955, 2630
EcoT14I	CCWWGG	5 cut(s)	894, 912, 1945, 2040, 2222
EcoT22I	ATGCAT	1 cut(s)	176
EcoT38I	GRGCYC	2 cut(s)	156, 835
ErhI	CCWWGG	5 cut(s)	894, 912, 1945, 2040, 2222
Esp3I	CGTCTC	1 cut(s)	184
FalI	AAGNNNNNCTT	6 cut(s)	263, 295, 403, 435, 1565, 1597
FaqI	GGGAC	4 cut(s)	541, 969, 1013, 2811
FauNDI	CATATG	1 cut(s)	988
FbaI	TGATCA	1 cut(s)	1339
FblI	GTMKAC	1 cut(s)	2013
FriOI	GRGCYC	2 cut(s)	156, 835
FspBI	CTAG	4 cut(s)	1946, 2031, 2643, 2930
GlaI	GCGC	3 cut(s)	1076, 2636, 2837
GsuI	CTGGAG	2 cut(s)	315, 1860
HaeIII	GGCC	6 cut(s)	352, 893, 1522, 2282, 2613, 2879
HapII	CCGG	8 cut(s)	349, 1003, 1040, 1506, 1585, 1819, 2024, 2489
HgaI	GACGC	1 cut(s)	851
HhaI	GCGC	3 cut(s)	1077, 2637, 2838
Hin6I	GCGC	3 cut(s)	1075, 2635, 2836
HinP1I	GCGC	3 cut(s)	1075, 2635, 2836
HincII	GTYRAC	4 cut(s)	814, 1534, 2463, 2527
HindII	GTYRAC	4 cut(s)	814, 1534, 2463, 2527
HpaI	GTTAAC	2 cut(s)	1534, 2527
HpaII	CCGG	8 cut(s)	349, 1003, 1040, 1506, 1585, 1819, 2024, 2489
HphI	GGTGA	6 cut(s)	174, 500, 1195, 1253, 1495, 1676
Hpy99I	CGWCG	3 cut(s)	1982, 2417, 2697
HpyAV	CCTTC	9 cut(s)	265, 271, 1118, 1180, 1957, 2010, 2540, 2579, 2901
HpyCH4III	ACNGT	4 cut(s)	1225, 1858, 2519, 2857
HpyCH4IV	ACGT	4 cut(s)	114, 966, 1228, 1977
HpyF10VI	GCNNNNNNNGC	5 cut(s)	677, 1609, 2288, 2399, 2935
HpyF3I	CTNAG	6 cut(s)	186, 430, 1890, 1983, 2292, 2366
HpySE526I	ACGT	4 cut(s)	114, 966, 1228, 1977
HspAI	GCGC	3 cut(s)	1075, 2635, 2836
Kpn2I	TCCGGA	1 cut(s)	1584
KpnI	GGTACC	1 cut(s)	167
Ksp22I	TGATCA	1 cut(s)	1339
KspAI	GTTAAC	2 cut(s)	1534, 2527
LmnI	GCTCC	3 cut(s)	151, 334, 2398
Lsp1109I	GCAGC	9 cut(s)	593, 615, 618, 664, 692, 1740, 1849, 2699, 2825
MabI	ACCWGGT	1 cut(s)	816
MaeI	CTAG	4 cut(s)	1946, 2031, 2643, 2930
MaeII	ACGT	4 cut(s)	114, 966, 1228, 1977
MaeIII	GTNAC	8 cut(s)	64, 898, 1501, 1809, 1939, 2697, 2818, 2911
MfeI	CAATTG	1 cut(s)	666
MflI	RGATCY	2 cut(s)	733, 1375
MhlI	GDGCHC	6 cut(s)	18, 156, 835, 859, 2141, 2376
MlsI	TGGCCA	1 cut(s)	1522
MluNI	TGGCCA	1 cut(s)	1522
MlyI	GAGTC	3 cut(s)	514, 1817, 1891
MmeI	TCCRAC	1 cut(s)	1734
Mox20I	TGGCCA	1 cut(s)	1522
Mph1103I	ATGCAT	1 cut(s)	176
MroI	TCCGGA	1 cut(s)	1584
MroXI	GAANNNNTTC	1 cut(s)	418
MscI	TGGCCA	1 cut(s)	1522
MslI	CAYNNNNRTG	3 cut(s)	421, 1398, 1404
Msp20I	TGGCCA	1 cut(s)	1522
MspCI	CTTAAG	1 cut(s)	887
MspI	CCGG	8 cut(s)	349, 1003, 1040, 1506, 1585, 1819, 2024, 2489
MunI	CAATTG	1 cut(s)	666
Mva1269I	GAATGC	4 cut(s)	643, 1561, 1702, 2389
MvaI	CCWGG	9 cut(s)	136, 218, 459, 777, 818, 1662, 1839, 1957, 2632
MvnI	CGCG	2 cut(s)	1077, 2250
MwoI	GCNNNNNNNGC	5 cut(s)	677, 1609, 2288, 2399, 2935
NciI	CCSGG	2 cut(s)	349, 2489
NcoI	CCATGG	1 cut(s)	894
NdeI	CATATG	1 cut(s)	988
NlaIV	GGNNCC	5 cut(s)	165, 910, 1001, 1377, 2827
NmuCI	GTSAC	6 cut(s)	64, 1501, 1809, 2697, 2818, 2911
NruI	TCGCGA	1 cut(s)	2250
NsiI	ATGCAT	1 cut(s)	176
NspI	RCATGY	3 cut(s)	112, 1403, 2461
NspV	TTCGAA	2 cut(s)	801, 1443
PagI	TCATGA	3 cut(s)	156, 282, 2781
PciI	ACATGT	1 cut(s)	2457
PcsI	WCGNNNNNNNCGW	1 cut(s)	2541
PctI	GAATGC	4 cut(s)	643, 1561, 1702, 2389
PdmI	GAANNNNTTC	1 cut(s)	418
PfeI	GAWTC	8 cut(s)	55, 210, 794, 981, 1295, 1310, 2245, 2417
PfoI	TCCNGGA	2 cut(s)	216, 2487
PinAI	ACCGGT	1 cut(s)	1505
Ple19I	CGATCG	1 cut(s)	2949
PleI	GAGTC	3 cut(s)	514, 1816, 1891
PpsI	GAGTC	3 cut(s)	514, 1816, 1891
Ppu21I	YACGTR	2 cut(s)	115, 1229
PscI	ACATGT	1 cut(s)	2457
PshBI	ATTAAT	1 cut(s)	1794
PsiI	TTATAA	3 cut(s)	386, 740, 1512
Psp124BI	GAGCTC	1 cut(s)	156
Psp1406I	AACGTT	1 cut(s)	966
Psp6I	CCWGG	9 cut(s)	134, 216, 457, 775, 816, 1660, 1837, 1955, 2630
PspGI	CCWGG	9 cut(s)	134, 216, 457, 775, 816, 1660, 1837, 1955, 2630
PspN4I	GGNNCC	5 cut(s)	165, 910, 1001, 1377, 2827
PspPI	GGNCC	6 cut(s)	572, 909, 1000, 1037, 2611, 2825
PstI	CTGCAG	3 cut(s)	636, 682, 1144
PstNI	CAGNNNCTG	1 cut(s)	1306
PsuI	RGATCY	2 cut(s)	733, 1375
PvuI	CGATCG	1 cut(s)	2949
RruI	TCGCGA	1 cut(s)	2250
RsaI	GTAC	8 cut(s)	38, 117, 165, 1166, 1227, 1763, 1855, 2120
RsaNI	GTAC	8 cut(s)	37, 116, 164, 1165, 1226, 1762, 1854, 2119
RseI	CAYNNNNRTG	3 cut(s)	421, 1398, 1404
SacI	GAGCTC	1 cut(s)	156
Sau96I	GGNCC	6 cut(s)	572, 909, 1000, 1037, 2611, 2825
SchI	GAGTC	3 cut(s)	514, 1817, 1891
SduI	GDGCHC	6 cut(s)	18, 156, 835, 859, 2141, 2376
SexAI	ACCWGGT	1 cut(s)	816
SfcI	CTRYAG	4 cut(s)	534, 632, 678, 1140
SfuI	TTCGAA	2 cut(s)	801, 1443
SinI	GGWCC	5 cut(s)	572, 909, 1000, 1037, 2825
SmiI	ATTTAAAT	1 cut(s)	2325
SmiMI	CAYNNNNRTG	3 cut(s)	421, 1398, 1404
SmlI	CTYRAG	4 cut(s)	764, 887, 1773, 2666
SmoI	CTYRAG	4 cut(s)	764, 887, 1773, 2666
SnaBI	TACGTA	1 cut(s)	1229
SpeI	ACTAGT	1 cut(s)	2642
SsiI	CCGC	4 cut(s)	1077, 2402, 2812, 2876
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	4 cut(s)	1946, 2031, 2643, 2930
SstI	GAGCTC	1 cut(s)	156
StyI	CCWWGG	5 cut(s)	894, 912, 1945, 2040, 2222
SwaI	ATTTAAAT	1 cut(s)	2325
TaaI	ACNGT	4 cut(s)	1225, 1858, 2519, 2857
TaiI	ACGT	4 cut(s)	117, 969, 1231, 1980
TaqI	TCGA	6 cut(s)	196, 801, 1443, 1683, 2535, 2871
TaqII	GACCGA	2 cut(s)	587, 2685
TatI	WGTACW	1 cut(s)	1761
TauI	GCSGC	1 cut(s)	2879
TfiI	GAWTC	8 cut(s)	55, 210, 794, 981, 1295, 1310, 2245, 2417
TscAI	CASTG	3 cut(s)	2069, 2706, 2827
TseFI	GTSAC	6 cut(s)	64, 1501, 1809, 2697, 2818, 2911
TseI	GCWGC	9 cut(s)	581, 628, 631, 677, 680, 1728, 1862, 2687, 2838
Tsp45I	GTSAC	6 cut(s)	64, 1501, 1809, 2697, 2818, 2911
TspGWI	ACGGA	2 cut(s)	1655, 2930
TspRI	CASTG	3 cut(s)	2069, 2706, 2827
Vha464I	CTTAAG	1 cut(s)	887
VneI	GTGCAC	2 cut(s)	2137, 2372
VpaK11BI	GGWCC	5 cut(s)	572, 909, 1000, 1037, 2825
VspI	ATTAAT	1 cut(s)	1794
XapI	RAATTY	3 cut(s)	1451, 2309, 2661
XceI	RCATGY	3 cut(s)	112, 1403, 2461
XmaJI	CCTAGG	1 cut(s)	1945
XmiI	GTMKAC	1 cut(s)	2013
XmnI	GAANNNNTTC	1 cut(s)	418
XspI	CTAG	4 cut(s)	1946, 2031, 2643, 2930
Zsp2I	ATGCAT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.