Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002476

Physical Location & Seq

Genomic Coordinates Reverse (-)

6027690 .. 6044933

Gene Structure 17244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g11070.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5529 bp

ATGGATATCCGCTTCCCTTTCTCCCCCTGCGAGGTCGCCAAGGTCCGCCGCGTCCAGTTCGGCATACTCAGCCCGGACGAAATCAGGCAAATGTCTGTGGTGCAGATTGAGCACAGTGAGACAATGCTGGGGGGAAAGCCGAAGACGGCGGGGTTGAGTGACCCTCGGTTGGGGACAATTGACCGGAAGATGAAGTGTGAGACTTGCACGGCGAATATGGCTGAGTGTCCGGGGCACTTTGGGCACCTGGAGCTTGCCAAGCCTATGTTTCATATAGGGTTCATGAAGACCGTGCTCTCCATTATGCGTTGCGTCTGCTTTAACTGCTCTAAAATCCTTGTTGATGAGGATGATCACAAGTTTAAGACGGCTTTGAGAATAAAGAACCCGAAGAATAGGTTAAAGAAAATTTTGGATGCATGCAAGAATAAAACAAAGTGTGAAGGTGGGGATGAGATTGATGTGCAAGATACCGACGAGCCTTTAAAGAAGAGTCGGGGTGGATGTGGTGCTCAGCAGCCCAAGCTTACTATTGATGGTATGAAGATGGTTGCAGAGTATAAAGCGCAAAGGAAGAAGAGTGATGACCAGGAACAGCTTCCTGAGCCTGTGGAAAGGAAGCAGACCCTTACTGCCGAAAGGGTTCTTAGTGTTTTAAAGAGGATAAGTGATGAGGACTGCCAATTATTGGGATTGAACCCCAAGTATGCACGTCCGGATTGGATGATTTTACAAGTTCTTCCTATTCCTCCACAACCTGTCAGACCCTCTGTGATGATGGACACCTCCTCGAGGAGTGAGGATGATTTAACCCATCAGCTGGCCATGATCATCCGCCACAATGAGAATCTGAGGAGACAGGAAAGAAACGGGTCACCTGCTCATATCATCTCAGAGTTTGCACAACTCTTGCAATTCCACATAGCTACATATTTTGATAATGAGTTGCCTGGACTTCCAAGGGCTACACAGAGATCAGGGAGACCCATTAAATCGATTTGTAGTAGGCTTAAGGCAAAGGAAGGCAGGATTAGAGGAAACTTAATGGGGAAGAGGGTTGATTTCTCAGCACGTACGGTTATTACACCAGATCCGAATATCAACATTGATCAATTAGGAGTACCATGGAGTATTGCGTTGAATCTCACATACCCTGAAACTGTGACTCCTTACAATATTGAAAGGTTAAAGGAGCTTGTTGAGTATGGACCCCATCCTCCACCGGGTAAAACTGGTGCAAAGTATATTATAAGAGATGATGGGCAAAGGCTTGATCTACGGTACTTGAAGAAAAGTAGTGATCATCATCTGGAGCTTGGTTATAAGGTGGAGCGTCATTTGAATGATGGAGACTTTGTCCTCTTCAATCGTCAACCCAGTCTCCATAAAATGTCTATTATGGGGCACAGAATCAAAATCATGCCTTACTCAACTTTTCGACTAAACCTCTCTGTCACTTCGCCTTACAATGCTGATTTTGATGGGGATGAAATGAATATGCACGTTCCCCAGTCATTTGAAACTAGGGCAGAGGTGTTGGAGCTCATGATGGTGCCCAAATGCATTGTGTCCCCTCAATCAAATCGTCCTGTGATGGGAATCGTCCAAGATACTCTACTGGGTTGTCGTAAGATCACAAAGAGAGATACCTTCATAGAGAAGGATGTTTTCATGAACATCTTGATGTGGTGGGAGGATTTTGATGGAAAAGTACCTGCTCCTGCTATATTGAAACCACGGCCTCTTTGGACTGGGAAACAGGTGTTCAATCTTATAATACCAAAGCAAATAAATCTCCAGAGAACTTCAGCATGGCACTCGGAGTCAGAAACTGGTAACATCACCCCCGGTGATACTCATGTTAGAATAGAAAAAGGGGAGTTACTTTCTGGAACTCTGTGCAAAAAGGCACTTGGGACATCTACTGGCAGTCTTATACACGTGATATGGGAAGAGGTGGGTCCTGATGCTGCCCGCAAATTTCTTGGTCATACCCAGTGGCTTGTGAATTACTGGCTGTTGCAGAATGCATTTAGCATTGGAATTGGAGACACAATTGCTGATGCAGCAACGATGGAAAAGATTAATGAAACTATTTCCAAGGCGAAAAATGAAGTGAAAGAACTTATCAGTAAAGCCCAATCCAAGAGCCTGGAGCCTGAACCGGGGCGAACTATGATGGATTCCTTTGAAAACAAAGTGAATCAGGTGTTGAATAGGGCTCGTGATGACGCTGGAAGTAGTGCTCAAAAGAGTTTGTCTGAGAGTAACAATCTCAAGGCTATGGTTACAGCCGGATCTAAGGGAAGTTTTATCAACATATCACAGATGACTGCTTGTGTGGGACAGCAGAATGTTGAGGGTAAACGAATCCCATATGGGTTCATAGACCGTACTTTGCCCCACTTCACTAAGGACGACTATGGACCAGAAAGTCGTGGCTTTGTAGAAAATTCATACCTTCGGGGACTAACTCCACAGGAGTTCTTCTTTCATGCTATGGGAGGTAGGGAAGGTCTTATAGATACTGCAGTCAAGACATCTGAGACTGGGTATATCCAGAGGAGACTGGTGAAGGCTATGGAGGATATTATGGTCAAATATGACGGGACTGTGAGAAATTCATTGGGGGATGTCATACAGTTTCTCTATGGAGAAGATGGAATGGATGCTGTATGGATAGAATCTCAAAAGCTGGATTCTCTAAAAATGAAAAAGAAGGAGTTTGACAAGACTTTTGCTTATGTGTTTGATGATGAAAATTGGAATCCAGACTATATGTTGCCTGAACATGTTGAGGATCTAAAAACTATTAGAGAGTTTCGCAACGTGTTTGATGCGGAAGTTTCAAAACTTGAAACTGATAGGCTTCAACTTGGCACAGAGATTGCTGTTACTGGTGATAATTCTTGGCCTTTGCCTGTTAACCTGAAGAGGCTCATTTGGAATGCACAGAAAACTTTTAAAATCGACTTCAGGAGGACATCTGATATGCATCCCATGGAAATTGTTGAGGCTATTGACAAACTACAGGAGAGGCTAAGGGTCGTTCCTGGTGATGATCTGTTGAGTGTTGAAGCACAAAAGAACGCAACTCTCTTTTTCAATATCTTGCTTCGCAGCACATTTGCAAGTAAAAGGGTGTTGGAGGAGTATAGGCTCACTCGTGAAGCATTTGAGTGGGTTATTGGGGAGATAGAGTCACGTTTCCTGCAATCACTTGTAGCACCTGGGGAAATGATTGGTTGCGTTGCTGCACAATCTATTGGTGAACCTGCCACTCAGATGACCCTCAATACCTTCCATTATGCTGGTGTGAGTGCAAAAAATGTGACACTAGGTGTTCCCAGGTTGAGGGAAATTATTAATGTTGCCAAGAGAATCAAAACCCCATCTCTGTCTGTGTACTTAAAGCCTGAAGCTAATAAAACCAAGGAGAGGGCTAAGAATGTGCAGTGTGCCTTGGAATACACTACTTTACGTAGTGTTACCCAAGCTACAGAAGTATGGTATGATCCAGATCCAATGAGCACACTGATAGAAGAGGATCTTGATTTCGTGAGATCTTACTACGAAATGCCAGATGAAGAAGTCAACCCCGACAAAATATCTCCATGGTTGCTTCGCATTGAGTTGAATCGTGAAATGATGGTGGATAAGAAATTGAGCATGGCTGACATTGCTGAGAAGATTAACCTTGAATTTGATGGTGATTTAACTTGTATTTTTAATGATGACAATGCCGAGAAGTTGATCCTTCGAATTCGTATCATGAATGAGGAGACTCCAAAAGGGGATTCACAAGATGAATCTGCTGAAGATGATGTATTCCTGAAGAAGATCGAGAGTAACATGCTTACAGAGATGGCCCTTCGAGGTATCCCAGATATTAATAAAGTGTTCATAAAGCATGGTAAAGTTAACAAGTTTGATCAGAATGAAGGATTCAAAGCAGAGCAAGAATGGATGTTGGATACAGAAGGTGTTAATCTTTTAGCTGTCCTGTGCCATGATGATGTTGATGCCAAGAGAACGACAAGCAATCATTTGATTGAAATTATTGAAGTTCTAGGGATTGAAGCAGTTCGTCGTTCTTTGTTGGATGAGTTGCGTGTTGTCATATCCTTTGATGGATCTTATGTGAACTACCGCCATCTGGCTATCCTATGTGATACCATGACGTATCGCGGCCACTTGATGGCCATTACACGTCATGGTATCAATAGAAATGACACTGGCCCAATGATGAGATGCTCGTTTGAAGAAACAGTGGATATTCTGCTGGATGCTTCGGTTTTTGCAGAAACGGATCATCTGAGGGGTGTGACAGAAAACATAATGTTAGGGCAGCTGGCACCAATTGGGACTGGAGACTGTGCCCTGTATCTCAACGATGAGATGCTAAAGAATGCTATTGAACTCCAGCTGCCTAGCTATGTGGATGGCCTTGATTTTGGCATGACACCATCCCGTTCGCCAGTGTCGGGAACTCCCTTCCGTGATGGAATGATGTCACCTAATTATTTGCTGAGCCCGAATATGCGAATGTCTCCCATCTCAGATGCTCAGTTTTCTCCCTATGTCGGTGGAATGGCATTCTCTCCTGCTTCATCTCCGGGTTACAGCCCATCCTCCCCTGGATACAGTCCGTCCTCCCCTGGATACAGTCCCACGTCCCCTGGTTATAGTCCCACCTCGCCGGGTTACAGCCCCACCTCCCCTGGTTATAGTCCCACTTCTCCAACCTATAGTCCAAGCTCTCCAGGTTATAGTCCAACCAGTCCAGCATATTCTCCTACGAGCCCCTCTTACTCACCTACCTCTCCAAGCTACAGTCCGACCTCTCCAAGCTACAGCCCGACTTCTCCAAGCTACAGCCCGACCTCTCCAAGCTACAGCCCGACTTCCCCCGCTTACAGTCCCACTTCCCCTGCGTACAGCCCCACTTCCCCTGCATACAGTCCAACTTCACCATCATACAGCCCAACATCTCCTTCATACAGCCCCACTTCCCCCTCCTACAGCCCAACATCTCCTTCATACAGCCCCACATCCCCCTCCTACAGCCCCACATCCCCATCCTACAGCCCAACTTCACCTGCCTACAGCCCAACTTCACCGGGTTACAGCCCTACTTCCCCGAGTTATAGTCCAACTTCTCCTAGTTATAGCCCTACCTCTCCGAGTTATAATCCTCCTTCTGCAAAATATAGCCCATCGGTAGCCTACTCTCCGAGCAGTCCAAGATTGTCACCAGCTAGCCCATATAGTCCTACCTCTCCAAATTACAGCCCCACATCACCATCGTATTCACCCACATCACCATCATATTCTCCTTCTAGCCCCTCATACACTCCTGGCAGCCCATATACCTCTGGAGTGAGCCCTGATTACAGCCCAAGTTCTCCACAATACAGTCCAAGTGCTGGGTACTCACCGAGTCAGCCAGGGTACTCCCCATCATCCACTAGCCAGTACACCCCGCAAACAAGCGAAAAGGATGTCAAGGATGACAGAAGCACTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0005773 GO:0005911 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030054 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0055029 GO:0055044 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_R

Protein Analysis

1843

Amino Acids

205.35

Weight (kDa)

5.96

Isoelectric Point (pI)

64.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_1	PF04997	16 - 336	1.6e-87	RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2	PF00623	338 - 492	1e-61	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3	PF04983	504 - 635	3.5e-35	RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4	PF05000	662 - 766	2.8e-38	RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5	PF04998	773 - 1362	2.1e-106	RNA polymerase Rpb1, domain 5
RNA_pol_Rpb1_6	PF04992	839 - 1023	1.5e-66	RNA polymerase Rpb1, domain 6
RNA_pol_Rpb1_7	PF04990	1108 - 1241	5.5e-48	RNA polymerase Rpb1, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35800 AT4G35800
fragaria_vesca	FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070
malus_domestica	MD02G1123200.v1.1 MD02G1123400.v1.1 MD02G1125500.v1.1 MD02G1125800.v1.1 MD15G1237200.v1.1
prunus_persica	Prupe.7G175200_v2.0.a1
pyrus_communis	pycom02g09610 pycom15g21110
rosa_chinensis	RchiOBHm_Chr2g0098321 RchiOBHm_Chr2g0098331
rosa_laevigata	RLG00000016790 RLG00000016791
rosa_multiflora	Rmu_co8358581.1_g000001 Rmu_sc0003434.1_g000008 Rmu_sc0023772.1_g000002 Rmu_sc0042863.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144060 Rroxscaffold_2G00144070
rosa_rugosa	Rorug02G0072000 Rorug02G0072000 Rorug02G0072100
rosa_samantha	Rh2AG119100 Rh2AG119200 Rh2BG122300 Rh2BG122400 Rh2CG123900 Rh2CG124000 Rh2DG123900 Rh2DG124000
rosa_wichuraiana	Rw2G009330 Rw2G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	1250, 1323, 1775, 5190
AarI	CACCTGC	2 cut(s)	886, 5107
AasI	GACNNNNNNGTC	1 cut(s)	2433
AbsI	CCTCGAGG	1 cut(s)	790
Acc36I	ACCTGC	4 cut(s)	886, 1723, 3283, 5107
AccB1I	GGYRCC	3 cut(s)	243, 1552, 4354
AccB7I	CCANNNNNTGG	4 cut(s)	688, 820, 4198, 5426
AccII	CGCG	2 cut(s)	51, 4188
AccIII	TCCGGA	1 cut(s)	715
AclWI	GGATC	9 cut(s)	1085, 2305, 2808, 3509, 3515, 3555, 3748, 4141, 4317
AcoI	YGGCCR	3 cut(s)	822, 4189, 4200
AcsI	RAATTY	6 cut(s)	408, 1979, 2452, 2620, 3701, 3762
AcuI	CTGAAG	6 cut(s)	1791, 2951, 2959, 3438, 3837, 3854
AcvI	CACGTG	1 cut(s)	1942
AdeI	CACNNNGTG	1 cut(s)	3341
AflII	CTTAAG	1 cut(s)	1010
AflIII	ACRYGT	4 cut(s)	1939, 2791, 2829, 4208
AjiI	CACGTC	3 cut(s)	713, 4211, 4674
AjuI	GAANNNNNNNTTGG	6 cut(s)	3781, 3813, 4978, 5010, 5020, 5052
Alw21I	GWGCWC	6 cut(s)	114, 297, 514, 1545, 2248, 3533
AlwI	GGATC	9 cut(s)	1085, 2305, 2808, 3509, 3515, 3555, 3748, 4141, 4317
AlwNI	CAGNNNCTG	1 cut(s)	1832
Ama87I	CYCGRG	2 cut(s)	790, 5140
Aor13HI	TCCGGA	1 cut(s)	715
AoxI	GGCC	8 cut(s)	822, 1739, 2912, 3867, 4189, 4200, 4237, 4444
ApeKI	GCWGC	8 cut(s)	517, 1970, 2066, 3120, 3254, 4348, 4426, 5361
ApoI	RAATTY	6 cut(s)	408, 1979, 2452, 2620, 3701, 3762
ArsI	GACNNNNNNTTYG	4 cut(s)	2720, 2752, 5487, 5519
AseI	ATTAAT	3 cut(s)	2085, 3366, 3891
Asp700I	GAANNNNTTC	3 cut(s)	597, 642, 4083
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	6 cut(s)	43, 1208, 1961, 2426, 3868, 4238
AsuC2I	CCSGG	8 cut(s)	74, 231, 1224, 1848, 2166, 4617, 4701, 5121
AsuII	TTCGAA	1 cut(s)	3760
AsuNHI	GCTAGC	1 cut(s)	5258
AvaI	CYCGRG	2 cut(s)	790, 5140
AvaII	GGWCC	4 cut(s)	43, 1208, 1961, 2426
BaeGI	GKGCMC	5 cut(s)	237, 246, 1407, 1557, 4381
BaeI	ACNNNNGTAYC	4 cut(s)	1845, 1878, 2517, 2550
BalI	TGGCCA	2 cut(s)	824, 4202
BanI	GGYRCC	3 cut(s)	243, 1552, 4354
BanII	GRGCYC	5 cut(s)	1545, 2224, 4535, 4805, 5387
BauI	CACGAG	2 cut(s)	2223, 3165
BbrPI	CACGTG	1 cut(s)	1942
BbsI	GAAGAC	2 cut(s)	149, 293
Bbv12I	GWGCWC	6 cut(s)	114, 297, 514, 1545, 2248, 3533
BbvI	GCAGC	8 cut(s)	529, 1957, 2078, 3132, 3241, 4360, 4413, 5373
BceAI	ACGGC	4 cut(s)	162, 225, 384, 1754
BcgI	CGANNNNNNTGC	2 cut(s)	1800, 1834
BciVI	GTATCC	4 cut(s)	3890, 3967, 4634, 4655
BclI	TGATCA	5 cut(s)	352, 828, 1108, 1300, 3931
BcnI	CCSGG	8 cut(s)	74, 231, 1224, 1848, 2166, 4617, 4701, 5121
BfaI	CTAG	8 cut(s)	1524, 3338, 4070, 4431, 5163, 5259, 5340, 5469
BfrI	CTTAAG	1 cut(s)	1010
BfuAI	ACCTGC	4 cut(s)	886, 1723, 3283, 5107
BfuI	GTATCC	4 cut(s)	3890, 3967, 4634, 4655
BglII	AGATCT	1 cut(s)	3563
BlpI	GCTNAGC	2 cut(s)	513, 4529
Bme18I	GGWCC	4 cut(s)	43, 1208, 1961, 2426
BmeT110I	CYCGRG	2 cut(s)	790, 5140
BmgBI	CACGTC	3 cut(s)	713, 4211, 4674
BmgT120I	GGNCC	6 cut(s)	43, 1208, 1961, 2426, 3868, 4238
BmiI	GGNNCC	6 cut(s)	245, 1210, 1554, 1962, 2157, 4356
BmrI	ACTGGG	6 cut(s)	1371, 1504, 1628, 1761, 1990, 2559
BmtI	GCTAGC	1 cut(s)	5262
BmuI	ACTGGG	6 cut(s)	1371, 1504, 1628, 1761, 1990, 2559
BpiI	GAAGAC	2 cut(s)	149, 293
BplI	GAGNNNNNCTC	2 cut(s)	148, 180
BpmI	CTGGAG	8 cut(s)	269, 1331, 1781, 2174, 4389, 4406, 4746, 5397
Bpu10I	CCTNAGC	2 cut(s)	603, 3041
Bpu1102I	GCTNAGC	2 cut(s)	513, 4529
Bpu14I	TTCGAA	1 cut(s)	3760
BpuEI	CTTGAG	1 cut(s)	2261
BpuMI	CCSGG	8 cut(s)	74, 231, 1224, 1848, 2166, 4617, 4701, 5121
Bsa29I	ATCGAT	1 cut(s)	995
BsaAI	YACGTR	3 cut(s)	1073, 1942, 3482
BsaBI	GATNNNNATC	4 cut(s)	1305, 1598, 2994, 3519
BsaI	GGTCTC	1 cut(s)	976
BsaWI	WCCGGW	2 cut(s)	183, 715
BsaXI	ACNNNNNCTCC	8 cut(s)	1150, 1180, 1341, 1365, 1371, 1395, 3185, 3215
Bse3DI	GCAATG	1 cut(s)	3678
Bse8I	GATNNNNATC	4 cut(s)	1305, 1598, 2994, 3519
BseAI	TCCGGA	1 cut(s)	715
BseCI	ATCGAT	1 cut(s)	995
BseJI	GATNNNNATC	4 cut(s)	1305, 1598, 2994, 3519
BseMI	GCAATG	1 cut(s)	3678
BseRI	GAGGAG	6 cut(s)	778, 808, 868, 2578, 3164, 3794
BseSI	GKGCMC	5 cut(s)	237, 246, 1407, 1557, 4381
BseXI	GCAGC	8 cut(s)	529, 1957, 2078, 3132, 3241, 4360, 4413, 5373
BseYI	CCCAGC	2 cut(s)	127, 5426
BsgI	GTGCAG	3 cut(s)	122, 3240, 3473
Bsh1236I	CGCG	2 cut(s)	51, 4188
BshFI	GGCC	8 cut(s)	824, 1741, 2914, 3869, 4191, 4202, 4239, 4446
BshNI	GGYRCC	3 cut(s)	243, 1552, 4354
BshVI	ATCGAT	1 cut(s)	995
BsiHKAI	GWGCWC	6 cut(s)	114, 297, 514, 1545, 2248, 3533
BsiHKCI	CYCGRG	2 cut(s)	790, 5140
BsiWI	CGTACG	1 cut(s)	1073
BsmI	GAATGC	4 cut(s)	2032, 2953, 4414, 4595
BsnI	GGCC	8 cut(s)	824, 1741, 2914, 3869, 4191, 4202, 4239, 4446
Bso31I	GGTCTC	1 cut(s)	976
BsoBI	CYCGRG	2 cut(s)	790, 5140
Bsp119I	TTCGAA	1 cut(s)	3760
Bsp13I	TCCGGA	1 cut(s)	715
Bsp1720I	GCTNAGC	2 cut(s)	513, 4529
Bsp19I	CCATGG	3 cut(s)	1124, 3000, 3614
BspANI	GGCC	8 cut(s)	824, 1741, 2914, 3869, 4191, 4202, 4239, 4446
BspDI	ATCGAT	1 cut(s)	995
BspEI	TCCGGA	1 cut(s)	715
BspFNI	CGCG	2 cut(s)	51, 4188
BspHI	TCATGA	4 cut(s)	282, 1545, 1671, 3771
BspLI	GGNNCC	6 cut(s)	245, 1210, 1554, 1962, 2157, 4356
BspMAI	CTGCAG	1 cut(s)	2533
BspMI	ACCTGC	4 cut(s)	886, 1723, 3283, 5107
BspOI	GCTAGC	1 cut(s)	5262
BspPI	GGATC	9 cut(s)	1085, 2305, 2808, 3509, 3515, 3555, 3748, 4141, 4317
BspT104I	TTCGAA	1 cut(s)	3760
BspT107I	GGYRCC	3 cut(s)	243, 1552, 4354
BspTI	CTTAAG	1 cut(s)	1010
BspTNI	GGTCTC	1 cut(s)	976
BsrDI	GCAATG	1 cut(s)	3678
BssSI	CACGAG	2 cut(s)	2223, 3165
BssT1I	CCWWGG	8 cut(s)	39, 959, 1124, 2100, 3000, 3432, 3462, 3614
Bst2BI	CACGAG	2 cut(s)	2223, 3165
Bst6I	CTCTTC	7 cut(s)	485, 572, 1046, 1367, 1947, 2927, 3537
BstAFI	CTTAAG	1 cut(s)	1010
BstBAI	YACGTR	3 cut(s)	1073, 1942, 3482
BstBI	TTCGAA	1 cut(s)	3760
BstC8I	GCNNGC	6 cut(s)	255, 421, 822, 1975, 4353, 5260
BstDSI	CCRYGG	4 cut(s)	1124, 1736, 3000, 3614
BstEII	GGTNACC	1 cut(s)	873
BstENI	CCTNNNNNAGG	1 cut(s)	790
BstFNI	CGCG	2 cut(s)	51, 4188
BstHHI	GCGC	1 cut(s)	568
BstNSI	RCATGY	3 cut(s)	423, 2795, 3856
BstPI	GGTNACC	1 cut(s)	873
BstSLI	GKGCMC	5 cut(s)	237, 246, 1407, 1557, 4381
BstSNI	TACGTA	1 cut(s)	3482
BstUI	CGCG	2 cut(s)	51, 4188
BstV1I	GCAGC	8 cut(s)	529, 1957, 2078, 3132, 3241, 4360, 4413, 5373
BstV2I	GAAGAC	2 cut(s)	149, 293
BstX2I	RGATCY	7 cut(s)	1090, 2297, 2800, 3520, 3547, 3563, 4133
BstXI	CCANNNNNNTGG	2 cut(s)	2152, 3311
BstYI	RGATCY	7 cut(s)	1090, 2297, 2800, 3520, 3547, 3563, 4133
Bsu15I	ATCGAT	1 cut(s)	995
BsuI	GTATCC	4 cut(s)	3890, 3967, 4634, 4655
BsuRI	GGCC	8 cut(s)	824, 1741, 2914, 3869, 4191, 4202, 4239, 4446
BsuTUI	ATCGAT	1 cut(s)	995
BtgI	CCRYGG	4 cut(s)	1124, 1736, 3000, 3614
BtrI	CACGTC	3 cut(s)	713, 4211, 4674
BtsI	GCAGTG	1 cut(s)	3461
BtsIMutI	CAGTG	7 cut(s)	121, 2003, 3461, 3533, 4233, 4275, 4485
BveI	ACCTGC	4 cut(s)	886, 1723, 3283, 5107
Cac8I	GCNNGC	6 cut(s)	255, 421, 822, 1975, 4353, 5260
CaiI	CAGNNNCTG	1 cut(s)	1832
CciI	TCATGA	4 cut(s)	282, 1545, 1671, 3771
CfoI	GCGC	1 cut(s)	568
Cfr13I	GGNCC	6 cut(s)	43, 1208, 1961, 2426, 3868, 4238
ClaI	ATCGAT	1 cut(s)	995
CseI	GACGC	4 cut(s)	40, 301, 1322, 2240
DraI	TTTAAA	3 cut(s)	486, 657, 2965
DraIII	CACNNNGTG	1 cut(s)	3341
DrdI	GACNNNNNNGTC	1 cut(s)	2433
DseDI	GACNNNNNNGTC	1 cut(s)	2433
EaeI	YGGCCR	3 cut(s)	822, 4189, 4200
Eam1104I	CTCTTC	7 cut(s)	485, 572, 1046, 1367, 1947, 2927, 3537
EarI	CTCTTC	7 cut(s)	485, 572, 1046, 1367, 1947, 2927, 3537
EciI	GGCGGA	2 cut(s)	35, 824
Ecl136II	GAGCTC	1 cut(s)	1543
Eco105I	TACGTA	1 cut(s)	3482
Eco130I	CCWWGG	8 cut(s)	39, 959, 1124, 2100, 3000, 3432, 3462, 3614
Eco24I	GRGCYC	5 cut(s)	1545, 2224, 4535, 4805, 5387
Eco31I	GGTCTC	1 cut(s)	976
Eco32I	GATATC	1 cut(s)	7
Eco47I	GGWCC	4 cut(s)	43, 1208, 1961, 2426
Eco53kI	GAGCTC	1 cut(s)	1543
Eco57I	CTGAAG	6 cut(s)	1791, 2951, 2959, 3438, 3837, 3854
Eco72I	CACGTG	1 cut(s)	1942
Eco88I	CYCGRG	2 cut(s)	790, 5140
Eco91I	GGTNACC	1 cut(s)	873
EcoICRI	GAGCTC	1 cut(s)	1543
EcoNI	CCTNNNNNAGG	1 cut(s)	790
EcoO109I	RGGNCCY	1 cut(s)	1961
EcoO65I	GGTNACC	1 cut(s)	873
EcoRI	GAATTC	1 cut(s)	3762
EcoRV	GATATC	1 cut(s)	7
EcoT14I	CCWWGG	8 cut(s)	39, 959, 1124, 2100, 3000, 3432, 3462, 3614
EcoT22I	ATGCAT	4 cut(s)	421, 1565, 2032, 2997
EcoT38I	GRGCYC	5 cut(s)	1545, 2224, 4535, 4805, 5387
ErhI	CCWWGG	8 cut(s)	39, 959, 1124, 2100, 3000, 3432, 3462, 3614
FalI	AAGNNNNNCTT	2 cut(s)	3534, 3566
FauI	CCCGC	4 cut(s)	142, 1982, 4918, 5490
FauNDI	CATATG	1 cut(s)	2377
FbaI	TGATCA	5 cut(s)	352, 828, 1108, 1300, 3931
FriOI	GRGCYC	5 cut(s)	1545, 2224, 4535, 4805, 5387
FspBI	CTAG	8 cut(s)	1524, 3338, 4070, 4431, 5163, 5259, 5340, 5469
GlaI	GCGC	1 cut(s)	567
GsaI	CCCAGC	2 cut(s)	131, 5430
GsuI	CTGGAG	8 cut(s)	269, 1331, 1781, 2174, 4389, 4406, 4746, 5397
HaeIII	GGCC	8 cut(s)	824, 1741, 2914, 3869, 4191, 4202, 4239, 4446
HgaI	GACGC	4 cut(s)	40, 301, 1322, 2240
HhaI	GCGC	1 cut(s)	568
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HincII	GTYRAC	4 cut(s)	1373, 2926, 3595, 3922
HindII	GTYRAC	4 cut(s)	1373, 2926, 3595, 3922
HindIII	AAGCTT	1 cut(s)	524
HpaI	GTTAAC	2 cut(s)	2926, 3922
Hpy166II	GTNNAC	9 cut(s)	1373, 2366, 2926, 3272, 3406, 3595, 3922, 4144, 5478
Hpy8I	GTNNAC	9 cut(s)	1373, 2366, 2926, 3272, 3406, 3595, 3922, 4144, 5478
Hpy99I	CGWCG	2 cut(s)	479, 4092
HspAI	GCGC	1 cut(s)	566
Kpn2I	TCCGGA	1 cut(s)	715
Ksp22I	TGATCA	5 cut(s)	352, 828, 1108, 1300, 3931
KspAI	GTTAAC	2 cut(s)	2926, 3922
LmnI	GCTCC	7 cut(s)	250, 1192, 1312, 1330, 1540, 1723, 2155
Lsp1109I	GCAGC	8 cut(s)	529, 1957, 2078, 3132, 3241, 4360, 4413, 5373
MaeI	CTAG	8 cut(s)	1524, 3338, 4070, 4431, 5163, 5259, 5340, 5469
MfeI	CAATTG	3 cut(s)	177, 2055, 4359
MflI	RGATCY	7 cut(s)	1090, 2297, 2800, 3520, 3547, 3563, 4133
MlsI	TGGCCA	2 cut(s)	824, 4202
MluNI	TGGCCA	2 cut(s)	824, 4202
MlyI	GAGTC	6 cut(s)	502, 1159, 1832, 3209, 3778, 5449
MmeI	TCCRAC	9 cut(s)	1518, 3126, 3951, 4080, 4766, 4799, 4862, 4988, 5177
Mox20I	TGGCCA	2 cut(s)	824, 4202
Mph1103I	ATGCAT	4 cut(s)	421, 1565, 2032, 2997
MroI	TCCGGA	1 cut(s)	715
MroXI	GAANNNNTTC	3 cut(s)	597, 642, 4083
MscI	TGGCCA	2 cut(s)	824, 4202
MslI	CAYNNNNRTG	6 cut(s)	1341, 1550, 1682, 3178, 3284, 4014
Msp20I	TGGCCA	2 cut(s)	824, 4202
MspA1I	CMGCKG	3 cut(s)	820, 4351, 4426
MspCI	CTTAAG	1 cut(s)	1010
MunI	CAATTG	3 cut(s)	177, 2055, 4359
Mva1269I	GAATGC	4 cut(s)	2032, 2953, 4414, 4595
MvnI	CGCG	2 cut(s)	51, 4188
NciI	CCSGG	8 cut(s)	74, 231, 1224, 1848, 2166, 4617, 4701, 5121
NcoI	CCATGG	3 cut(s)	1124, 3000, 3614
NdeI	CATATG	1 cut(s)	2377
NheI	GCTAGC	1 cut(s)	5258
NlaIV	GGNNCC	6 cut(s)	245, 1210, 1554, 1962, 2157, 4356
NmeAIII	GCCGAG	1 cut(s)	3769
NmuCI	GTSAC	9 cut(s)	158, 873, 1162, 1453, 3201, 3331, 4324, 4512, 5250
NsiI	ATGCAT	4 cut(s)	421, 1565, 2032, 2997
NspI	RCATGY	3 cut(s)	423, 2795, 3856
NspV	TTCGAA	1 cut(s)	3760
PaeI	GCATGC	1 cut(s)	423
PaeR7I	CTCGAG	1 cut(s)	790
PagI	TCATGA	4 cut(s)	282, 1545, 1671, 3771
PaqCI	CACCTGC	2 cut(s)	886, 5107
PciI	ACATGT	1 cut(s)	2791
PctI	GAATGC	4 cut(s)	2032, 2953, 4414, 4595
PdmI	GAANNNNTTC	3 cut(s)	597, 642, 4083
Pfl23II	CGTACG	1 cut(s)	1073
PflFI	GACNNNGTC	1 cut(s)	1355
PflMI	CCANNNNNTGG	4 cut(s)	688, 820, 4198, 5426
PleI	GAGTC	6 cut(s)	501, 1159, 1831, 3208, 3778, 5448
PmaCI	CACGTG	1 cut(s)	1942
PmlI	CACGTG	1 cut(s)	1942
PpsI	GAGTC	6 cut(s)	501, 1159, 1831, 3208, 3778, 5448
Ppu21I	YACGTR	3 cut(s)	1073, 1942, 3482
PpuMI	RGGWCCY	1 cut(s)	1961
PscI	ACATGT	1 cut(s)	2791
PshBI	ATTAAT	3 cut(s)	2085, 3366, 3891
PsiI	TTATAA	4 cut(s)	1250, 1323, 1775, 5190
Psp124BI	GAGCTC	1 cut(s)	1545
Psp5II	RGGWCCY	1 cut(s)	1961
PspCI	CACGTG	1 cut(s)	1942
PspEI	GGTNACC	1 cut(s)	873
PspFI	CCCAGC	2 cut(s)	127, 5426
PspLI	CGTACG	1 cut(s)	1073
PspN4I	GGNNCC	6 cut(s)	245, 1210, 1554, 1962, 2157, 4356
PspPI	GGNCC	6 cut(s)	43, 1208, 1961, 2426, 3868, 4238
PspPPI	RGGWCCY	1 cut(s)	1961
PspXI	VCTCGAGB	1 cut(s)	790
PstI	CTGCAG	1 cut(s)	2533
PstNI	CAGNNNCTG	1 cut(s)	1832
PsuI	RGATCY	7 cut(s)	1090, 2297, 2800, 3520, 3547, 3563, 4133
PsyI	GACNNNGTC	1 cut(s)	1355
PvuII	CAGCTG	3 cut(s)	820, 4351, 4426
RseI	CAYNNNNRTG	6 cut(s)	1341, 1550, 1682, 3178, 3284, 4014
SacI	GAGCTC	1 cut(s)	1545
Sau96I	GGNCC	6 cut(s)	43, 1208, 1961, 2426, 3868, 4238
SchI	GAGTC	6 cut(s)	502, 1159, 1832, 3209, 3778, 5449
Sfr274I	CTCGAG	1 cut(s)	790
SfuI	TTCGAA	1 cut(s)	3760
SinI	GGWCC	4 cut(s)	43, 1208, 1961, 2426
SlaI	CTCGAG	1 cut(s)	790
SmiMI	CAYNNNNRTG	6 cut(s)	1341, 1550, 1682, 3178, 3284, 4014
SmlI	CTYRAG	3 cut(s)	790, 1010, 2276
SmoI	CTYRAG	3 cut(s)	790, 1010, 2276
SnaBI	TACGTA	1 cut(s)	3482
SphI	GCATGC	1 cut(s)	423
SspI	AATATT	1 cut(s)	1177
SspMI	CTAG	8 cut(s)	1524, 3338, 4070, 4431, 5163, 5259, 5340, 5469
SstI	GAGCTC	1 cut(s)	1545
StyI	CCWWGG	8 cut(s)	39, 959, 1124, 2100, 3000, 3432, 3462, 3614
TaqI	TCGA	7 cut(s)	791, 995, 1438, 2970, 3760, 3843, 3874
TatI	WGTACW	2 cut(s)	3405, 5475
TauI	GCSGC	2 cut(s)	51, 4191
TscAI	CASTG	7 cut(s)	121, 2003, 3461, 3540, 4240, 4275, 4485
TseFI	GTSAC	9 cut(s)	158, 873, 1162, 1453, 3201, 3331, 4324, 4512, 5250
TseI	GCWGC	8 cut(s)	517, 1970, 2066, 3120, 3254, 4348, 4426, 5361
Tsp45I	GTSAC	9 cut(s)	158, 873, 1162, 1453, 3201, 3331, 4324, 4512, 5250
TspGWI	ACGGA	3 cut(s)	4322, 4487, 4638
TspRI	CASTG	7 cut(s)	121, 2003, 3461, 3540, 4240, 4275, 4485
Tth111I	GACNNNGTC	1 cut(s)	1355
Van91I	CCANNNNNTGG	4 cut(s)	688, 820, 4198, 5426
Vha464I	CTTAAG	1 cut(s)	1010
VpaK11BI	GGWCC	4 cut(s)	43, 1208, 1961, 2426
VspI	ATTAAT	3 cut(s)	2085, 3366, 3891
XagI	CCTNNNNNAGG	1 cut(s)	790
XapI	RAATTY	6 cut(s)	408, 1979, 2452, 2620, 3701, 3762
XceI	RCATGY	3 cut(s)	423, 2795, 3856
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1743
XhoI	CTCGAG	1 cut(s)	790
XmnI	GAANNNNTTC	3 cut(s)	597, 642, 4083
XspI	CTAG	8 cut(s)	1524, 3338, 4070, 4431, 5163, 5259, 5340, 5469
Zsp2I	ATGCAT	4 cut(s)	421, 1565, 2032, 2997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.