Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042863.1

Orthogroup ID

OG0002476

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1310

Gene Structure 1310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042863.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

gatgatttaacacatcagctggccatgattatccgccacaacgagaatctgaggagacaggaaagaaacggatcacccgctcatatcatctcagagtttgcacaactcttgcaattccatatagctacatattttgataatgagttgcctggactaccaagggccacacagagatcagggaggcctattaaatcaatttgtagtaggcttaaggcgaaggaaggtcggattagaggaaacttaatggggaagagggttgatttctcagcacgtacggttattacaccagatccgaacattaacattgatcaattaggagtaccatggagtattgcgctgaatctcacataccctgaaactgtgactccttataatattgaaaggttgaaggagcttgttgagtacgggccccatcctccaccaggtaaaactggtgcaaagtatataataagagatgatggacaaaggcttgatctacggtacttgaaaagaagtagtgatcatcatttggagcttggttataaggtggagcgtcatttgaatgatggagactttgtcctctttaatcgtcaacccagtctccataaaatgtctattatggggcacagaatcaaaatcatgccttactcaacttttcgattaaatctatctgtcacttcgccttataatgctgattttgatggggatgaaatgaatatgcacgttccccagtcatttgaaactagggcagaagtgttggagctcatgatggtgcccaaatgcattgtgtcccctcaatcaaatcgtcctgtgatgggaatagtccaagataccctgttgggttgtcgtaagatcaccaagagggataccttcatagagaaggtacagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0005773 GO:0005911 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030054 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0055029 GO:0055044 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_R

Protein Analysis

289

Amino Acids

33.21

Weight (kDa)

9.3

Isoelectric Point (pI)

54.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35800 AT4G35800
fragaria_vesca	FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070
malus_domestica	MD02G1123200.v1.1 MD02G1123400.v1.1 MD02G1125500.v1.1 MD02G1125800.v1.1 MD15G1237200.v1.1
prunus_persica	Prupe.7G175200_v2.0.a1
pyrus_communis	pycom02g09610 pycom15g21110
rosa_chinensis	RchiOBHm_Chr2g0098321 RchiOBHm_Chr2g0098331
rosa_laevigata	RLG00000016790 RLG00000016791
rosa_multiflora	Rmu_co8358581.1_g000001 Rmu_sc0003434.1_g000008 Rmu_sc0023772.1_g000002 Rmu_sc0042863.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144060 Rroxscaffold_2G00144070
rosa_rugosa	Rorug02G0072000 Rorug02G0072000 Rorug02G0072100
rosa_samantha	Rh2AG119100 Rh2AG119200 Rh2BG122300 Rh2BG122400 Rh2CG123900 Rh2CG124000 Rh2DG123900 Rh2DG124000
rosa_wichuraiana	Rw2G009330 Rw2G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	372, 522, 666
AccB1I	GGYRCC	1 cut(s)	751
AccBSI	CCGCTC	1 cut(s)	80
AciI	CCGC	2 cut(s)	34, 78
AclWI	GGATC	2 cut(s)	79, 284
AcoI	YGGCCR	1 cut(s)	21
AfaI	GTAC	5 cut(s)	274, 321, 404, 482, 864
AfiI	CCNNNNNNNGG	2 cut(s)	422, 794
AflII	CTTAAG	1 cut(s)	209
AgsI	TTSAA	5 cut(s)	380, 388, 487, 541, 719
AjnI	CCWGG	2 cut(s)	148, 421
AluBI	AGCT	5 cut(s)	19, 125, 394, 514, 742
AluI	AGCT	5 cut(s)	19, 125, 394, 514, 742
Alw21I	GWGCWC	1 cut(s)	744
Alw26I	GTCTC	3 cut(s)	49, 543, 584
AlwI	GGATC	2 cut(s)	79, 284
AoxI	GGCC	4 cut(s)	21, 162, 182, 407
ApaI	GGGCCC	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	337
AspS9I	GGNCC	3 cut(s)	162, 407, 408
AsuHPI	GGTGA	2 cut(s)	66, 826
BaeGI	GKGCMC	3 cut(s)	411, 606, 756
BalI	TGGCCA	1 cut(s)	23
BanI	GGYRCC	1 cut(s)	751
BanII	GRGCYC	2 cut(s)	411, 744
Bbv12I	GWGCWC	1 cut(s)	744
BccI	CCATC	6 cut(s)	420, 452, 539, 674, 742, 787
BciT130I	CCWGG	2 cut(s)	150, 423
BciVI	GTATCC	1 cut(s)	838
BclI	TGATCA	2 cut(s)	307, 499
BcoDI	GTCTC	3 cut(s)	49, 543, 584
BfaI	CTAG	1 cut(s)	723
BfrI	CTTAAG	1 cut(s)	209
BfuI	GTATCC	1 cut(s)	838
Bme1390I	CCNGG	2 cut(s)	150, 423
BmgT120I	GGNCC	3 cut(s)	162, 407, 408
BmiI	GGNNCC	3 cut(s)	409, 410, 753
BmrFI	CCNGG	2 cut(s)	150, 423
BmrI	ACTGGG	2 cut(s)	570, 703
BmuI	ACTGGG	2 cut(s)	570, 703
BsaAI	YACGTR	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	158, 323
BsaXI	ACNNNNNCTCC	6 cut(s)	349, 379, 540, 564, 570, 594
Bsc4I	CCNNNNNNNGG	2 cut(s)	422, 794
Bse1I	ACTGG	3 cut(s)	436, 576, 709
BseBI	CCWGG	2 cut(s)	150, 423
BseDI	CCNNGG	2 cut(s)	158, 323
BseGI	GGATG	2 cut(s)	412, 691
BseLI	CCNNNNNNNGG	2 cut(s)	422, 794
BseMII	CTCAG	3 cut(s)	41, 105, 279
BseNI	ACTGG	3 cut(s)	436, 576, 709
BseRI	GAGGAG	1 cut(s)	67
BseSI	GKGCMC	3 cut(s)	411, 606, 756
BshFI	GGCC	4 cut(s)	23, 164, 184, 409
BshNI	GGYRCC	1 cut(s)	751
BsiHKAI	GWGCWC	1 cut(s)	744
BsiWI	CGTACG	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	754
BslI	CCNNNNNNNGG	2 cut(s)	422, 794
BsmAI	GTCTC	3 cut(s)	49, 543, 584
BsmFI	GGGAC	1 cut(s)	754
BsnI	GGCC	4 cut(s)	23, 164, 184, 409
Bsp120I	GGGCCC	1 cut(s)	407
Bsp1286I	GDGCHC	4 cut(s)	411, 606, 744, 756
Bsp143I	GATC	7 cut(s)	71, 173, 289, 307, 472, 499, 831
Bsp19I	CCATGG	1 cut(s)	323
BspACI	CCGC	2 cut(s)	34, 78
BspANI	GGCC	4 cut(s)	23, 164, 184, 409
BspCNI	CTCAG	3 cut(s)	42, 104, 278
BspHI	TCATGA	1 cut(s)	744
BspLI	GGNNCC	3 cut(s)	409, 410, 753
BspPI	GGATC	2 cut(s)	79, 284
BspT107I	GGYRCC	1 cut(s)	751
BspTI	CTTAAG	1 cut(s)	209
BsrBI	CCGCTC	1 cut(s)	80
BsrI	ACTGG	3 cut(s)	436, 576, 709
BssECI	CCNNGG	2 cut(s)	158, 323
BssMI	GATC	7 cut(s)	71, 173, 289, 307, 472, 499, 831
BssT1I	CCWWGG	2 cut(s)	158, 323
Bst2UI	CCWGG	2 cut(s)	150, 423
Bst4CI	ACNGT	4 cut(s)	277, 361, 480, 867
Bst6I	CTCTTC	1 cut(s)	245
BstAFI	CTTAAG	1 cut(s)	209
BstBAI	YACGTR	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	3 cut(s)	50, 91, 265
BstDSI	CCRYGG	1 cut(s)	323
BstENI	CCTNNNNNAGG	1 cut(s)	420
BstF5I	GGATG	2 cut(s)	412, 691
BstHHI	GCGC	1 cut(s)	337
BstKTI	GATC	7 cut(s)	74, 176, 292, 310, 475, 502, 834
BstMAI	GTCTC	3 cut(s)	49, 543, 584
BstMBI	GATC	7 cut(s)	71, 173, 289, 307, 472, 499, 831
BstNI	CCWGG	2 cut(s)	150, 423
BstSCI	CCNGG	2 cut(s)	148, 421
BstSLI	GKGCMC	3 cut(s)	411, 606, 756
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuI	GTATCC	1 cut(s)	838
BsuRI	GGCC	4 cut(s)	23, 164, 184, 409
BtgI	CCRYGG	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	412, 691
Cac8I	GCNNGC	1 cut(s)	21
CciI	TCATGA	1 cut(s)	744
CfoI	GCGC	1 cut(s)	337
Cfr13I	GGNCC	3 cut(s)	162, 407, 408
CseI	GACGC	1 cut(s)	521
CsiI	ACCWGGT	1 cut(s)	421
Csp6I	GTAC	5 cut(s)	273, 320, 403, 481, 863
CviAII	CATG	4 cut(s)	25, 324, 619, 745
CviQI	GTAC	5 cut(s)	273, 320, 403, 481, 863
DdeI	CTNAG	3 cut(s)	50, 91, 265
DpnI	GATC	7 cut(s)	73, 175, 291, 309, 474, 501, 833
DpnII	GATC	7 cut(s)	71, 173, 289, 307, 472, 499, 831
EaeI	YGGCCR	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
EciI	GGCGGA	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	742
Eco130I	CCWWGG	2 cut(s)	158, 323
Eco147I	AGGCCT	1 cut(s)	184
Eco24I	GRGCYC	2 cut(s)	411, 744
Eco53kI	GAGCTC	1 cut(s)	742
EcoICRI	GAGCTC	1 cut(s)	742
EcoNI	CCTNNNNNAGG	1 cut(s)	420
EcoO109I	RGGNCCY	1 cut(s)	408
EcoRII	CCWGG	2 cut(s)	148, 421
EcoT14I	CCWWGG	2 cut(s)	158, 323
EcoT22I	ATGCAT	1 cut(s)	764
EcoT38I	GRGCYC	2 cut(s)	411, 744
ErhI	CCWWGG	2 cut(s)	158, 323
FaeI	CATG	4 cut(s)	28, 327, 622, 748
FaqI	GGGAC	1 cut(s)	754
FatI	CATG	4 cut(s)	24, 323, 618, 744
FauI	CCCGC	1 cut(s)	85
FbaI	TGATCA	2 cut(s)	307, 499
FokI	GGATG	2 cut(s)	399, 698
FriOI	GRGCYC	2 cut(s)	411, 744
FspBI	CTAG	1 cut(s)	723
GlaI	GCGC	1 cut(s)	336
HaeIII	GGCC	4 cut(s)	23, 164, 184, 409
HgaI	GACGC	1 cut(s)	521
HhaI	GCGC	1 cut(s)	337
Hin1II	CATG	4 cut(s)	28, 327, 622, 748
Hin6I	GCGC	1 cut(s)	335
HinP1I	GCGC	1 cut(s)	335
HincII	GTYRAC	1 cut(s)	572
HindII	GTYRAC	1 cut(s)	572
HinfI	GANTC	4 cut(s)	46, 340, 364, 609
HphI	GGTGA	2 cut(s)	66, 826
Hpy166II	GTNNAC	1 cut(s)	572
Hpy188I	TCNGA	4 cut(s)	51, 94, 228, 294
Hpy188III	TCNNGA	1 cut(s)	745
Hpy8I	GTNNAC	1 cut(s)	572
HpyAV	CCTTC	5 cut(s)	211, 215, 382, 853, 859
HpyCH4III	ACNGT	4 cut(s)	277, 361, 480, 867
HpyCH4IV	ACGT	2 cut(s)	271, 702
HpyCH4V	TGCA	5 cut(s)	101, 112, 437, 700, 762
HpyF3I	CTNAG	3 cut(s)	50, 91, 265
HpySE526I	ACGT	2 cut(s)	271, 702
Hsp92II	CATG	4 cut(s)	28, 327, 622, 748
HspAI	GCGC	1 cut(s)	335
Ksp22I	TGATCA	2 cut(s)	307, 499
Kzo9I	GATC	7 cut(s)	71, 173, 289, 307, 472, 499, 831
LmnI	GCTCC	4 cut(s)	391, 511, 529, 739
MabI	ACCWGGT	1 cut(s)	421
MaeI	CTAG	1 cut(s)	723
MaeII	ACGT	2 cut(s)	271, 702
MaeIII	GTNAC	2 cut(s)	361, 652
MalI	GATC	7 cut(s)	73, 175, 291, 309, 474, 501, 833
MbiI	CCGCTC	1 cut(s)	80
MboI	GATC	7 cut(s)	71, 173, 289, 307, 472, 499, 831
MboII	GAAGA	1 cut(s)	262
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	4 cut(s)	411, 606, 744, 756
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	3 cut(s)	113, 195, 311
MluNI	TGGCCA	1 cut(s)	23
MlyI	GAGTC	1 cut(s)	358
MmeI	TCCRAC	2 cut(s)	206, 717
MnlI	CCTC	8 cut(s)	45, 174, 227, 246, 426, 569, 783, 834
Mox20I	TGGCCA	1 cut(s)	23
Mph1103I	ATGCAT	1 cut(s)	764
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	7 cut(s)	8, 189, 210, 242, 300, 564, 641
MslI	CAYNNNNRTG	2 cut(s)	540, 749
Msp20I	TGGCCA	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	19
MspCI	CTTAAG	1 cut(s)	209
MspR9I	CCNGG	2 cut(s)	150, 423
MvaI	CCWGG	2 cut(s)	150, 423
NcoI	CCATGG	1 cut(s)	323
NdeII	GATC	7 cut(s)	71, 173, 289, 307, 472, 499, 831
NlaIII	CATG	4 cut(s)	28, 327, 622, 748
NlaIV	GGNNCC	3 cut(s)	409, 410, 753
NmuCI	GTSAC	2 cut(s)	361, 652
NsiI	ATGCAT	1 cut(s)	764
PagI	TCATGA	1 cut(s)	744
PceI	AGGCCT	1 cut(s)	184
PfeI	GAWTC	3 cut(s)	46, 340, 609
Pfl23II	CGTACG	1 cut(s)	272
PflFI	GACNNNGTC	1 cut(s)	554
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
Ppu21I	YACGTR	1 cut(s)	272
PsiI	TTATAA	3 cut(s)	372, 522, 666
Psp124BI	GAGCTC	1 cut(s)	744
Psp6I	CCWGG	2 cut(s)	148, 421
PspGI	CCWGG	2 cut(s)	148, 421
PspLI	CGTACG	1 cut(s)	272
PspN4I	GGNNCC	3 cut(s)	409, 410, 753
PspOMI	GGGCCC	1 cut(s)	407
PspPI	GGNCC	3 cut(s)	162, 407, 408
PsuI	RGATCY	1 cut(s)	289
PsyI	GACNNNGTC	1 cut(s)	554
PvuII	CAGCTG	1 cut(s)	19
RsaI	GTAC	5 cut(s)	274, 321, 404, 482, 864
RsaNI	GTAC	5 cut(s)	273, 320, 403, 481, 863
RseI	CAYNNNNRTG	2 cut(s)	540, 749
SacI	GAGCTC	1 cut(s)	744
SaqAI	TTAA	7 cut(s)	8, 189, 210, 242, 300, 564, 641
Sau3AI	GATC	7 cut(s)	71, 173, 289, 307, 472, 499, 831
Sau96I	GGNCC	3 cut(s)	162, 407, 408
SchI	GAGTC	1 cut(s)	358
ScrFI	CCNGG	2 cut(s)	150, 423
SduI	GDGCHC	4 cut(s)	411, 606, 744, 756
SexAI	ACCWGGT	1 cut(s)	421
SmiMI	CAYNNNNRTG	2 cut(s)	540, 749
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	3 cut(s)	113, 195, 311
SseBI	AGGCCT	1 cut(s)	184
SsiI	CCGC	2 cut(s)	34, 78
SspI	AATATT	1 cut(s)	376
SspMI	CTAG	1 cut(s)	723
SstI	GAGCTC	1 cut(s)	744
StuI	AGGCCT	1 cut(s)	184
StyD4I	CCNGG	2 cut(s)	148, 421
StyI	CCWWGG	2 cut(s)	158, 323
TaaI	ACNGT	4 cut(s)	277, 361, 480, 867
TaiI	ACGT	2 cut(s)	274, 705
TaqI	TCGA	1 cut(s)	637
TasI	AATT	3 cut(s)	113, 195, 311
TfiI	GAWTC	3 cut(s)	46, 340, 609
Tru1I	TTAA	7 cut(s)	8, 189, 210, 242, 300, 564, 641
Tru9I	TTAA	7 cut(s)	8, 189, 210, 242, 300, 564, 641
TseFI	GTSAC	2 cut(s)	361, 652
Tsp45I	GTSAC	2 cut(s)	361, 652
TspDTI	ATGAA	3 cut(s)	702, 707, 841
TspGWI	ACGGA	1 cut(s)	84
Tth111I	GACNNNGTC	1 cut(s)	554
Vha464I	CTTAAG	1 cut(s)	209
XagI	CCTNNNNNAGG	1 cut(s)	420
XspI	CTAG	1 cut(s)	723
Zsp2I	ATGCAT	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.