DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G35800 AT4G35800 |
| fragaria_vesca | FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 |
| malus_domestica | MD02G1123200.v1.1 MD02G1123400.v1.1 MD02G1125500.v1.1 MD02G1125800.v1.1 MD15G1237200.v1.1 |
| prunus_persica | Prupe.7G175200_v2.0.a1 |
| pyrus_communis | pycom02g09610 pycom15g21110 |
| rosa_chinensis | RchiOBHm_Chr2g0098321 RchiOBHm_Chr2g0098331 |
| rosa_laevigata | RLG00000016790 RLG00000016791 |
| rosa_multiflora | Rmu_co8358581.1_g000001 Rmu_sc0003434.1_g000008 Rmu_sc0023772.1_g000002 Rmu_sc0042863.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00144060 Rroxscaffold_2G00144070 |
| rosa_rugosa | Rorug02G0072000 Rorug02G0072000 Rorug02G0072100 |
| rosa_samantha | Rh2AG119100 Rh2AG119200 Rh2BG122300 Rh2BG122400 Rh2CG123900 Rh2CG124000 Rh2DG123900 Rh2DG124000 |
| rosa_wichuraiana | Rw2G009330 Rw2G009340 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 852, 1002, 1146, 1454 |
| AarI | CACCTGC | 1 cut(s) | 4762 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 295, 2112 |
| Acc36I | ACCTGC | 3 cut(s) | 1402, 2148, 4762 |
| AccB1I | GGYRCC | 3 cut(s) | 243, 1231, 4030 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 3874, 5081 |
| AccII | CGCG | 3 cut(s) | 51, 419, 4147 |
| AccIII | TCCGGA | 2 cut(s) | 2449, 3196 |
| AclWI | GGATC | 9 cut(s) | 764, 1984, 2487, 3188, 3234, 3550, 3563, 3817, 3993 |
| AcoI | YGGCCR | 5 cut(s) | 210, 255, 2591, 3865, 3876 |
| AcsI | RAATTY | 7 cut(s) | 408, 1658, 2049, 2131, 2299, 2402, 3233 |
| AcuI | CTGAAG | 6 cut(s) | 1470, 2541, 2741, 3117, 3513, 3530 |
| AcyI | GRCGYC | 1 cut(s) | 3092 |
| AflII | CTTAAG | 1 cut(s) | 689 |
| AflIII | ACRYGT | 2 cut(s) | 417, 1618 |
| AjiI | CACGTC | 3 cut(s) | 1621, 4350, 4371 |
| Alw21I | GWGCWC | 5 cut(s) | 114, 357, 514, 1224, 3212 |
| Alw26I | GTCTC | 9 cut(s) | 113, 194, 1023, 1064, 2219, 2239, 3452, 4041, 4230 |
| AlwI | GGATC | 9 cut(s) | 764, 1984, 2487, 3188, 3234, 3550, 3563, 3817, 3993 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1511 |
| Ama87I | CYCGRG | 1 cut(s) | 229 |
| Aor13HI | TCCGGA | 2 cut(s) | 2449, 3196 |
| ApaI | GGGCCC | 1 cut(s) | 891 |
| ApeKI | GCWGC | 9 cut(s) | 309, 517, 1649, 1828, 2799, 2933, 4102, 5016, 5227 |
| ApoI | RAATTY | 7 cut(s) | 408, 1658, 2049, 2131, 2299, 2402, 3233 |
| AseI | ATTAAT | 1 cut(s) | 3372 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 597, 2662 |
| AspLEI | GCGC | 3 cut(s) | 309, 817, 5232 |
| AspS9I | GGNCC | 9 cut(s) | 43, 642, 887, 888, 1640, 2105, 3199, 3914, 5169 |
| AsuC2I | CCSGG | 3 cut(s) | 230, 231, 5013 |
| AsuII | TTCGAA | 1 cut(s) | 3936 |
| AsuNHI | GCTAGC | 2 cut(s) | 2810, 4913 |
| AvaI | CYCGRG | 1 cut(s) | 229 |
| AvaII | GGWCC | 5 cut(s) | 43, 1640, 2105, 3199, 5169 |
| BaeGI | GKGCMC | 7 cut(s) | 230, 246, 891, 1086, 1236, 1927, 4057 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1524, 1557, 2196, 2229 |
| BalI | TGGCCA | 3 cut(s) | 257, 3867, 3878 |
| BamHI | GGATCC | 1 cut(s) | 3555 |
| BanI | GGYRCC | 3 cut(s) | 243, 1231, 4030 |
| BanII | GRGCYC | 6 cut(s) | 74, 891, 1224, 1903, 4211, 5042 |
| BauI | CACGAG | 2 cut(s) | 1902, 2844 |
| BbsI | GAAGAC | 2 cut(s) | 149, 293 |
| Bbv12I | GWGCWC | 5 cut(s) | 114, 357, 514, 1224, 3212 |
| BbvCI | CCTCAGC | 1 cut(s) | 5234 |
| BbvI | GCAGC | 9 cut(s) | 296, 529, 1661, 1840, 2811, 2920, 4089, 5028, 5214 |
| BceAI | ACGGC | 6 cut(s) | 10, 162, 225, 1433, 2578, 5242 |
| BciVI | GTATCC | 3 cut(s) | 1318, 3643, 5078 |
| BclI | TGATCA | 4 cut(s) | 787, 979, 3484, 3607 |
| BcnI | CCSGG | 3 cut(s) | 230, 231, 5013 |
| BcoDI | GTCTC | 9 cut(s) | 113, 194, 1023, 1064, 2219, 2239, 3452, 4041, 4230 |
| BfrI | CTTAAG | 1 cut(s) | 689 |
| BfuAI | ACCTGC | 3 cut(s) | 1402, 2148, 4762 |
| BfuI | GTATCC | 3 cut(s) | 1318, 3643, 5078 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 218, 1745 |
| BlpI | GCTNAGC | 2 cut(s) | 513, 4205 |
| Bme18I | GGWCC | 5 cut(s) | 43, 1640, 2105, 3199, 5169 |
| BmeT110I | CYCGRG | 1 cut(s) | 229 |
| BmgBI | CACGTC | 3 cut(s) | 1621, 4350, 4371 |
| BmgT120I | GGNCC | 9 cut(s) | 43, 642, 887, 888, 1640, 2105, 3199, 3914, 5169 |
| BmiI | GGNNCC | 7 cut(s) | 245, 889, 890, 1233, 3201, 3557, 4032 |
| BmrI | ACTGGG | 6 cut(s) | 1050, 1183, 1440, 1669, 2238, 5088 |
| BmsI | GCATC | 8 cut(s) | 1636, 1732, 1900, 3688, 3912, 3952, 4065, 4228 |
| BmtI | GCTAGC | 2 cut(s) | 2814, 4917 |
| BmuI | ACTGGG | 6 cut(s) | 1050, 1183, 1440, 1669, 2238, 5088 |
| BpiI | GAAGAC | 2 cut(s) | 149, 293 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 148, 180 |
| Bpu10I | CCTNAGC | 1 cut(s) | 5234 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 513, 4205 |
| Bpu14I | TTCGAA | 1 cut(s) | 3936 |
| BpuEI | CTTGAG | 2 cut(s) | 1940, 3156 |
| BpuMI | CCSGG | 3 cut(s) | 230, 231, 5013 |
| BsaAI | YACGTR | 1 cut(s) | 752 |
| BsaHI | GRCGYC | 1 cut(s) | 3092 |
| BsaWI | WCCGGW | 5 cut(s) | 183, 2070, 2107, 2449, 3196 |
| Bse118I | RCCGGY | 3 cut(s) | 2990, 3765, 3911 |
| Bse3DI | GCAATG | 1 cut(s) | 3357 |
| BseAI | TCCGGA | 2 cut(s) | 2449, 3196 |
| BseMI | GCAATG | 1 cut(s) | 3357 |
| BseRI | GAGGAG | 3 cut(s) | 362, 365, 2257 |
| BseSI | GKGCMC | 7 cut(s) | 230, 246, 891, 1086, 1236, 1927, 4057 |
| BseXI | GCAGC | 9 cut(s) | 296, 529, 1661, 1840, 2811, 2920, 4089, 5028, 5214 |
| BseYI | CCCAGC | 3 cut(s) | 127, 169, 2505 |
| BsgI | GTGCAG | 2 cut(s) | 122, 2919 |
| Bsh1236I | CGCG | 3 cut(s) | 51, 419, 4147 |
| BshNI | GGYRCC | 3 cut(s) | 243, 1231, 4030 |
| BsiHKAI | GWGCWC | 5 cut(s) | 114, 357, 514, 1224, 3212 |
| BsiHKCI | CYCGRG | 1 cut(s) | 229 |
| BsiWI | CGTACG | 1 cut(s) | 752 |
| BslFI | GGGAC | 9 cut(s) | 187, 1234, 1609, 2037, 2302, 4054, 4336, 4357, 4392 |
| BsmAI | GTCTC | 9 cut(s) | 113, 194, 1023, 1064, 2219, 2239, 3452, 4041, 4230 |
| BsmBI | CGTCTC | 1 cut(s) | 3452 |
| BsmFI | GGGAC | 9 cut(s) | 187, 1234, 1609, 2037, 2302, 4054, 4336, 4357, 4392 |
| BsmI | GAATGC | 3 cut(s) | 2632, 4090, 4271 |
| BsoBI | CYCGRG | 1 cut(s) | 229 |
| Bsp119I | TTCGAA | 1 cut(s) | 3936 |
| Bsp120I | GGGCCC | 1 cut(s) | 887 |
| Bsp13I | TCCGGA | 2 cut(s) | 2449, 3196 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 513, 4205 |
| Bsp19I | CCATGG | 3 cut(s) | 803, 1962, 3889 |
| BspEI | TCCGGA | 2 cut(s) | 2449, 3196 |
| BspFNI | CGCG | 3 cut(s) | 51, 419, 4147 |
| BspHI | TCATGA | 4 cut(s) | 282, 1224, 1350, 3450 |
| BspLI | GGNNCC | 7 cut(s) | 245, 889, 890, 1233, 3201, 3557, 4032 |
| BspMAI | CTGCAG | 1 cut(s) | 2212 |
| BspMI | ACCTGC | 3 cut(s) | 1402, 2148, 4762 |
| BspOI | GCTAGC | 2 cut(s) | 2814, 4917 |
| BspPI | GGATC | 9 cut(s) | 764, 1984, 2487, 3188, 3234, 3550, 3563, 3817, 3993 |
| BspQI | GCTCTTC | 1 cut(s) | 3552 |
| BspT104I | TTCGAA | 1 cut(s) | 3936 |
| BspT107I | GGYRCC | 3 cut(s) | 243, 1231, 4030 |
| BspTI | CTTAAG | 1 cut(s) | 689 |
| BsrDI | GCAATG | 1 cut(s) | 3357 |
| BsrFI | RCCGGY | 3 cut(s) | 2990, 3765, 3911 |
| BssAI | RCCGGY | 3 cut(s) | 2990, 3765, 3911 |
| BssNI | GRCGYC | 1 cut(s) | 3092 |
| BssSI | CACGAG | 2 cut(s) | 1902, 2844 |
| BssT1I | CCWWGG | 7 cut(s) | 39, 803, 1962, 3026, 3111, 3293, 3889 |
| Bst2BI | CACGAG | 2 cut(s) | 1902, 2844 |
| Bst6I | CTCTTC | 6 cut(s) | 572, 725, 1626, 1925, 3261, 3552 |
| BstACI | GRCGYC | 1 cut(s) | 3092 |
| BstAFI | CTTAAG | 1 cut(s) | 689 |
| BstBAI | YACGTR | 1 cut(s) | 752 |
| BstBI | TTCGAA | 1 cut(s) | 3936 |
| BstC8I | GCNNGC | 8 cut(s) | 255, 421, 2812, 2884, 2951, 2955, 4915, 5214 |
| BstDSI | CCRYGG | 4 cut(s) | 803, 1415, 1962, 3889 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 900 |
| BstFNI | CGCG | 3 cut(s) | 51, 419, 4147 |
| BstHHI | GCGC | 3 cut(s) | 309, 817, 5232 |
| BstMAI | GTCTC | 9 cut(s) | 113, 194, 1023, 1064, 2219, 2239, 3452, 4041, 4230 |
| BstNSI | RCATGY | 1 cut(s) | 3532 |
| BstSLI | GKGCMC | 7 cut(s) | 230, 246, 891, 1086, 1236, 1927, 4057 |
| BstUI | CGCG | 3 cut(s) | 51, 419, 4147 |
| BstV1I | GCAGC | 9 cut(s) | 296, 529, 1661, 1840, 2811, 2920, 4089, 5028, 5214 |
| BstV2I | GAAGAC | 2 cut(s) | 149, 293 |
| BstX2I | RGATCY | 5 cut(s) | 769, 2479, 3226, 3555, 3809 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1831 |
| BstYI | RGATCY | 5 cut(s) | 769, 2479, 3226, 3555, 3809 |
| BsuI | GTATCC | 3 cut(s) | 1318, 3643, 5078 |
| BtgI | CCRYGG | 4 cut(s) | 803, 1415, 1962, 3889 |
| BtgZI | GCGATG | 1 cut(s) | 4128 |
| BtrI | CACGTC | 3 cut(s) | 1621, 4350, 4371 |
| BtsIMutI | CAGTG | 7 cut(s) | 121, 1682, 3140, 3404, 4161, 5128, 5271 |
| BveI | ACCTGC | 3 cut(s) | 1402, 2148, 4762 |
| Cac8I | GCNNGC | 8 cut(s) | 255, 421, 2812, 2884, 2951, 2955, 4915, 5214 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1511 |
| CciI | TCATGA | 4 cut(s) | 282, 1224, 1350, 3450 |
| CfoI | GCGC | 3 cut(s) | 309, 817, 5232 |
| Cfr10I | RCCGGY | 3 cut(s) | 2990, 3765, 3911 |
| Cfr13I | GGNCC | 9 cut(s) | 43, 642, 887, 888, 1640, 2105, 3199, 3914, 5169 |
| Cfr9I | CCCGGG | 1 cut(s) | 229 |
| CseI | GACGC | 7 cut(s) | 40, 301, 425, 1001, 2357, 2525, 3100 |
| CsiI | ACCWGGT | 2 cut(s) | 901, 1884 |
| DraI | TTTAAA | 2 cut(s) | 486, 2385 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 295, 2112 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 295, 2112 |
| EaeI | YGGCCR | 5 cut(s) | 210, 255, 2591, 3865, 3876 |
| Eam1104I | CTCTTC | 6 cut(s) | 572, 725, 1626, 1925, 3261, 3552 |
| EarI | CTCTTC | 6 cut(s) | 572, 725, 1626, 1925, 3261, 3552 |
| EciI | GGCGGA | 1 cut(s) | 35 |
| Ecl136II | GAGCTC | 1 cut(s) | 1222 |
| Eco130I | CCWWGG | 7 cut(s) | 39, 803, 1962, 3026, 3111, 3293, 3889 |
| Eco147I | AGGCCT | 1 cut(s) | 664 |
| Eco24I | GRGCYC | 6 cut(s) | 74, 891, 1224, 1903, 4211, 5042 |
| Eco47I | GGWCC | 5 cut(s) | 43, 1640, 2105, 3199, 5169 |
| Eco53kI | GAGCTC | 1 cut(s) | 1222 |
| Eco57I | CTGAAG | 6 cut(s) | 1470, 2541, 2741, 3117, 3513, 3530 |
| Eco88I | CYCGRG | 1 cut(s) | 229 |
| EcoICRI | GAGCTC | 1 cut(s) | 1222 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 900 |
| EcoO109I | RGGNCCY | 1 cut(s) | 888 |
| EcoRI | GAATTC | 2 cut(s) | 2049, 2131 |
| EcoT14I | CCWWGG | 7 cut(s) | 39, 803, 1962, 3026, 3111, 3293, 3889 |
| EcoT22I | ATGCAT | 1 cut(s) | 1244 |
| EcoT38I | GRGCYC | 6 cut(s) | 74, 891, 1224, 1903, 4211, 5042 |
| ErhI | CCWWGG | 7 cut(s) | 39, 803, 1962, 3026, 3111, 3293, 3889 |
| Esp3I | CGTCTC | 1 cut(s) | 3452 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 4468, 4500, 5134, 5166 |
| FaqI | GGGAC | 9 cut(s) | 187, 1234, 1609, 2037, 2302, 4054, 4336, 4357, 4392 |
| FauI | CCCGC | 4 cut(s) | 142, 4594, 4615, 4636 |
| FauNDI | CATATG | 1 cut(s) | 1625 |
| FbaI | TGATCA | 4 cut(s) | 787, 979, 3484, 3607 |
| FriOI | GRGCYC | 6 cut(s) | 74, 891, 1224, 1903, 4211, 5042 |
| GlaI | GCGC | 3 cut(s) | 308, 816, 5231 |
| GsaI | CCCAGC | 3 cut(s) | 131, 173, 2509 |
| HgaI | GACGC | 7 cut(s) | 40, 301, 425, 1001, 2357, 2525, 3100 |
| HhaI | GCGC | 3 cut(s) | 309, 817, 5232 |
| Hin1I | GRCGYC | 1 cut(s) | 3092 |
| Hin6I | GCGC | 3 cut(s) | 307, 815, 5230 |
| HinP1I | GCGC | 3 cut(s) | 307, 815, 5230 |
| HincII | GTYRAC | 3 cut(s) | 1052, 2605, 3598 |
| HindII | GTYRAC | 3 cut(s) | 1052, 2605, 3598 |
| HindIII | AAGCTT | 1 cut(s) | 2837 |
| HpaI | GTTAAC | 2 cut(s) | 2605, 3598 |
| Hpy166II | GTNNAC | 8 cut(s) | 1052, 1882, 2064, 2605, 3598, 3820, 5147, 5292 |
| Hpy8I | GTNNAC | 8 cut(s) | 1052, 1882, 2064, 2605, 3598, 3820, 5147, 5292 |
| Hpy99I | CGWCG | 1 cut(s) | 80 |
| HpyCH4IV | ACGT | 6 cut(s) | 751, 1182, 1539, 1620, 4349, 4370 |
| HpySE526I | ACGT | 6 cut(s) | 751, 1182, 1539, 1620, 4349, 4370 |
| Hsp92I | GRCGYC | 1 cut(s) | 3092 |
| HspAI | GCGC | 3 cut(s) | 307, 815, 5230 |
| Kpn2I | TCCGGA | 2 cut(s) | 2449, 3196 |
| Ksp22I | TGATCA | 4 cut(s) | 787, 979, 3484, 3607 |
| KspAI | GTTAAC | 2 cut(s) | 2605, 3598 |
| LguI | GCTCTTC | 1 cut(s) | 3552 |
| Lsp1109I | GCAGC | 9 cut(s) | 296, 529, 1661, 1840, 2811, 2920, 4089, 5028, 5214 |
| LweI | GCATC | 8 cut(s) | 1636, 1732, 1900, 3688, 3912, 3952, 4065, 4228 |
| MabI | ACCWGGT | 2 cut(s) | 901, 1884 |
| MaeII | ACGT | 6 cut(s) | 751, 1182, 1539, 1620, 4349, 4370 |
| MfeI | CAATTG | 3 cut(s) | 177, 1734, 4035 |
| MflI | RGATCY | 5 cut(s) | 769, 2479, 3226, 3555, 3809 |
| MlsI | TGGCCA | 3 cut(s) | 257, 3867, 3878 |
| MluI | ACGCGT | 1 cut(s) | 417 |
| MluNI | TGGCCA | 3 cut(s) | 257, 3867, 3878 |
| MlyI | GAGTC | 3 cut(s) | 838, 2962, 5197 |
| MmeI | TCCRAC | 8 cut(s) | 686, 1197, 2473, 3627, 4442, 4475, 4559, 4832 |
| Mox20I | TGGCCA | 3 cut(s) | 257, 3867, 3878 |
| Mph1103I | ATGCAT | 1 cut(s) | 1244 |
| MroI | TCCGGA | 2 cut(s) | 2449, 3196 |
| MroXI | GAANNNNTTC | 2 cut(s) | 597, 2662 |
| MscI | TGGCCA | 3 cut(s) | 257, 3867, 3878 |
| MslI | CAYNNNNRTG | 7 cut(s) | 1020, 1229, 1361, 2857, 2963, 3311, 3690 |
| Msp20I | TGGCCA | 3 cut(s) | 257, 3867, 3878 |
| MspA1I | CMGCKG | 3 cut(s) | 635, 1831, 4102 |
| MspCI | CTTAAG | 1 cut(s) | 689 |
| MunI | CAATTG | 3 cut(s) | 177, 1734, 4035 |
| Mva1269I | GAATGC | 3 cut(s) | 2632, 4090, 4271 |
| MvnI | CGCG | 3 cut(s) | 51, 419, 4147 |
| NciI | CCSGG | 3 cut(s) | 230, 231, 5013 |
| NcoI | CCATGG | 3 cut(s) | 803, 1962, 3889 |
| NdeI | CATATG | 1 cut(s) | 1625 |
| NheI | GCTAGC | 2 cut(s) | 2810, 4913 |
| NlaIV | GGNNCC | 7 cut(s) | 245, 889, 890, 1233, 3201, 3557, 4032 |
| NmeAIII | GCCGAG | 1 cut(s) | 145 |
| NmuCI | GTSAC | 7 cut(s) | 233, 841, 1132, 1966, 2572, 4188, 4905 |
| NsiI | ATGCAT | 1 cut(s) | 1244 |
| NspI | RCATGY | 1 cut(s) | 3532 |
| NspV | TTCGAA | 1 cut(s) | 3936 |
| PagI | TCATGA | 4 cut(s) | 282, 1224, 1350, 3450 |
| PaqCI | CACCTGC | 1 cut(s) | 4762 |
| PceI | AGGCCT | 1 cut(s) | 664 |
| PciSI | GCTCTTC | 1 cut(s) | 3552 |
| PctI | GAATGC | 3 cut(s) | 2632, 4090, 4271 |
| PdmI | GAANNNNTTC | 2 cut(s) | 597, 2662 |
| Pfl23II | CGTACG | 1 cut(s) | 752 |
| PflFI | GACNNNGTC | 1 cut(s) | 1034 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 3874, 5081 |
| PleI | GAGTC | 3 cut(s) | 838, 2962, 5197 |
| PpsI | GAGTC | 3 cut(s) | 838, 2962, 5197 |
| Ppu21I | YACGTR | 1 cut(s) | 752 |
| PshBI | ATTAAT | 1 cut(s) | 3372 |
| PsiI | TTATAA | 4 cut(s) | 852, 1002, 1146, 1454 |
| Psp124BI | GAGCTC | 1 cut(s) | 1224 |
| PspFI | CCCAGC | 3 cut(s) | 127, 169, 2505 |
| PspLI | CGTACG | 1 cut(s) | 752 |
| PspN4I | GGNNCC | 7 cut(s) | 245, 889, 890, 1233, 3201, 3557, 4032 |
| PspOMI | GGGCCC | 1 cut(s) | 887 |
| PspPI | GGNCC | 9 cut(s) | 43, 642, 887, 888, 1640, 2105, 3199, 3914, 5169 |
| PstI | CTGCAG | 1 cut(s) | 2212 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1511 |
| PsuI | RGATCY | 5 cut(s) | 769, 2479, 3226, 3555, 3809 |
| PsyI | GACNNNGTC | 1 cut(s) | 1034 |
| PvuII | CAGCTG | 2 cut(s) | 1831, 4102 |
| RseI | CAYNNNNRTG | 7 cut(s) | 1020, 1229, 1361, 2857, 2963, 3311, 3690 |
| SacI | GAGCTC | 1 cut(s) | 1224 |
| SapI | GCTCTTC | 1 cut(s) | 3552 |
| Sau96I | GGNCC | 9 cut(s) | 43, 642, 887, 888, 1640, 2105, 3199, 3914, 5169 |
| SchI | GAGTC | 3 cut(s) | 838, 2962, 5197 |
| SexAI | ACCWGGT | 2 cut(s) | 901, 1884 |
| SfaNI | GCATC | 8 cut(s) | 1636, 1732, 1900, 3688, 3912, 3952, 4065, 4228 |
| SfuI | TTCGAA | 1 cut(s) | 3936 |
| SinI | GGWCC | 5 cut(s) | 43, 1640, 2105, 3199, 5169 |
| SmaI | CCCGGG | 1 cut(s) | 231 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 1020, 1229, 1361, 2857, 2963, 3311, 3690 |
| SmlI | CTYRAG | 3 cut(s) | 689, 1955, 3171 |
| SmoI | CTYRAG | 3 cut(s) | 689, 1955, 3171 |
| SseBI | AGGCCT | 1 cut(s) | 664 |
| SspI | AATATT | 2 cut(s) | 856, 1407 |
| SstI | GAGCTC | 1 cut(s) | 1224 |
| StuI | AGGCCT | 1 cut(s) | 664 |
| StyI | CCWWGG | 7 cut(s) | 39, 803, 1962, 3026, 3111, 3293, 3889 |
| TaiI | ACGT | 6 cut(s) | 754, 1185, 1542, 1623, 4352, 4373 |
| TaqI | TCGA | 3 cut(s) | 1117, 1979, 3936 |
| TatI | WGTACW | 4 cut(s) | 558, 2832, 5067, 5291 |
| TauI | GCSGC | 2 cut(s) | 51, 1748 |
| TscAI | CASTG | 7 cut(s) | 121, 1682, 3140, 3404, 4161, 5135, 5271 |
| TseFI | GTSAC | 7 cut(s) | 233, 841, 1132, 1966, 2572, 4188, 4905 |
| TseI | GCWGC | 9 cut(s) | 309, 517, 1649, 1828, 2799, 2933, 4102, 5016, 5227 |
| Tsp45I | GTSAC | 7 cut(s) | 233, 841, 1132, 1966, 2572, 4188, 4905 |
| TspGWI | ACGGA | 4 cut(s) | 2043, 3434, 3998, 4470 |
| TspMI | CCCGGG | 1 cut(s) | 229 |
| TspRI | CASTG | 7 cut(s) | 121, 1682, 3140, 3404, 4161, 5135, 5271 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1034 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 3874, 5081 |
| Vha464I | CTTAAG | 1 cut(s) | 689 |
| VpaK11BI | GGWCC | 5 cut(s) | 43, 1640, 2105, 3199, 5169 |
| VspI | ATTAAT | 1 cut(s) | 3372 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 900 |
| XapI | RAATTY | 7 cut(s) | 408, 1658, 2049, 2131, 2299, 2402, 3233 |
| XceI | RCATGY | 1 cut(s) | 3532 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1422 |
| XmaI | CCCGGG | 1 cut(s) | 229 |
| XmnI | GAANNNNTTC | 2 cut(s) | 597, 2662 |
| Zsp2I | ATGCAT | 1 cut(s) | 1244 |