DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G35800 AT4G35800 |
| fragaria_vesca | FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 |
| malus_domestica | MD02G1123200.v1.1 MD02G1123400.v1.1 MD02G1125500.v1.1 MD02G1125800.v1.1 MD15G1237200.v1.1 |
| prunus_persica | Prupe.7G175200_v2.0.a1 |
| pyrus_communis | pycom02g09610 pycom15g21110 |
| rosa_chinensis | RchiOBHm_Chr2g0098321 RchiOBHm_Chr2g0098331 |
| rosa_laevigata | RLG00000016790 RLG00000016791 |
| rosa_multiflora | Rmu_co8358581.1_g000001 Rmu_sc0003434.1_g000008 Rmu_sc0023772.1_g000002 Rmu_sc0042863.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00144060 Rroxscaffold_2G00144070 |
| rosa_rugosa | Rorug02G0072000 Rorug02G0072000 Rorug02G0072100 |
| rosa_samantha | Rh2AG119100 Rh2AG119200 Rh2BG122300 Rh2BG122400 Rh2CG123900 Rh2CG124000 Rh2DG123900 Rh2DG124000 |
| rosa_wichuraiana | Rw2G009330 Rw2G009340 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1781, 2135 |
| AarI | CACCTGC | 4 cut(s) | 892, 4945, 4966, 4987 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 295, 2439 |
| Acc36I | ACCTGC | 6 cut(s) | 140, 892, 2475, 4945, 4966, 4987 |
| AccB1I | GGYRCC | 3 cut(s) | 243, 1558, 1629 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 694, 5432 |
| AccI | GTMKAC | 1 cut(s) | 3411 |
| AccII | CGCG | 2 cut(s) | 504, 3648 |
| AciI | CCGC | 8 cut(s) | 29, 46, 504, 507, 2537, 3282, 3749, 3819 |
| AclI | AACGTT | 1 cut(s) | 2361 |
| AclWI | GGATC | 6 cut(s) | 155, 1091, 2814, 3515, 3754, 3932 |
| AcoI | YGGCCR | 3 cut(s) | 1745, 2918, 4206 |
| AcuI | CTGAAG | 6 cut(s) | 501, 2957, 3068, 3444, 3807, 3843 |
| AflII | CTTAAG | 1 cut(s) | 1016 |
| AflIII | ACRYGT | 4 cut(s) | 203, 1945, 2784, 2797 |
| AgeI | ACCGGT | 1 cut(s) | 4241 |
| AjiI | CACGTC | 1 cut(s) | 4680 |
| Alw21I | GWGCWC | 6 cut(s) | 114, 520, 1551, 2254, 3539, 4262 |
| AlwI | GGATC | 6 cut(s) | 155, 1091, 2814, 3515, 3754, 3932 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1166 |
| Ama87I | CYCGRG | 2 cut(s) | 229, 4706 |
| ApaI | GGGCCC | 1 cut(s) | 1218 |
| ApeKI | GCWGC | 8 cut(s) | 523, 1976, 2072, 2155, 2353, 3126, 3260, 4295 |
| AseI | ATTAAT | 2 cut(s) | 2091, 3372 |
| AsiGI | ACCGGT | 1 cut(s) | 4241 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 603, 648, 2989, 3305 |
| AspA2I | CCTAGG | 1 cut(s) | 3343 |
| AspLEI | GCGC | 1 cut(s) | 1341 |
| AspS9I | GGNCC | 8 cut(s) | 232, 1214, 1215, 1593, 1967, 2304, 2432, 4244 |
| AsuC2I | CCSGG | 8 cut(s) | 74, 230, 231, 1854, 1970, 4623, 4707, 4708 |
| AsuII | TTCGAA | 2 cut(s) | 2196, 3766 |
| AsuNHI | GCTAGC | 1 cut(s) | 3137 |
| AvaI | CYCGRG | 2 cut(s) | 229, 4706 |
| AvaII | GGWCC | 3 cut(s) | 2304, 2432, 4244 |
| AvrII | CCTAGG | 1 cut(s) | 3343 |
| BaeGI | GKGCMC | 7 cut(s) | 230, 246, 1218, 1413, 1563, 4200, 4387 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1851, 1884, 2523, 2556 |
| BalI | TGGCCA | 2 cut(s) | 2920, 4208 |
| BanI | GGYRCC | 3 cut(s) | 243, 1558, 1629 |
| BanII | GRGCYC | 8 cut(s) | 74, 389, 1218, 1551, 2230, 3282, 4541, 5393 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 5359, 5391 |
| BauI | CACGAG | 2 cut(s) | 2229, 3171 |
| BbsI | GAAGAC | 2 cut(s) | 293, 1762 |
| Bbv12I | GWGCWC | 6 cut(s) | 114, 520, 1551, 2254, 3539, 4262 |
| BbvI | GCAGC | 8 cut(s) | 535, 1988, 2059, 2167, 2365, 3138, 3247, 4282 |
| BceAI | ACGGC | 5 cut(s) | 162, 1414, 1617, 1760, 5449 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 297, 331, 1806, 1840, 3115, 3149 |
| BciVI | GTATCC | 6 cut(s) | 1609, 1645, 2387, 3896, 3973, 4661 |
| BclI | TGATCA | 3 cut(s) | 352, 1114, 1306 |
| BcnI | CCSGG | 8 cut(s) | 74, 230, 231, 1854, 1970, 4623, 4707, 4708 |
| BfoI | RGCGCY | 1 cut(s) | 1342 |
| BfrI | CTTAAG | 1 cut(s) | 1016 |
| BfuAI | ACCTGC | 6 cut(s) | 140, 892, 2475, 4945, 4966, 4987 |
| BfuI | GTATCC | 6 cut(s) | 1609, 1645, 2387, 3896, 3973, 4661 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 218 |
| BglII | AGATCT | 1 cut(s) | 2128 |
| BlnI | CCTAGG | 1 cut(s) | 3343 |
| BlpI | GCTNAGC | 2 cut(s) | 519, 4535 |
| BmcAI | AGTACT | 1 cut(s) | 1542 |
| Bme18I | GGWCC | 3 cut(s) | 2304, 2432, 4244 |
| BmeT110I | CYCGRG | 2 cut(s) | 229, 4706 |
| BmgBI | CACGTC | 1 cut(s) | 4680 |
| BmgT120I | GGNCC | 8 cut(s) | 232, 1214, 1215, 1593, 1967, 2304, 2432, 4244 |
| BmiI | GGNNCC | 7 cut(s) | 245, 1216, 1217, 1560, 1631, 2305, 4246 |
| BmrI | ACTGGG | 3 cut(s) | 682, 2565, 4567 |
| BmtI | GCTAGC | 1 cut(s) | 3141 |
| BmuI | ACTGGG | 3 cut(s) | 682, 2565, 4567 |
| BoxI | GACNNNNGTC | 1 cut(s) | 4242 |
| BpiI | GAAGAC | 2 cut(s) | 293, 1762 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 958, 990 |
| BpmI | CTGGAG | 7 cut(s) | 1565, 2180, 3020, 4412, 4467, 4752, 5403 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 519, 4535 |
| Bpu14I | TTCGAA | 2 cut(s) | 2196, 3766 |
| BpuEI | CTTGAG | 2 cut(s) | 269, 3483 |
| BpuMI | CCSGG | 8 cut(s) | 74, 230, 231, 1854, 1970, 4623, 4707, 4708 |
| BsaAI | YACGTR | 3 cut(s) | 936, 1155, 5355 |
| BsaI | GGTCTC | 2 cut(s) | 113, 763 |
| BsaWI | WCCGGW | 2 cut(s) | 2397, 4241 |
| Bse118I | RCCGGY | 3 cut(s) | 25, 4241, 5104 |
| Bse3DI | GCAATG | 3 cut(s) | 2839, 2921, 3684 |
| BseMI | GCAATG | 3 cut(s) | 2839, 2921, 3684 |
| BseRI | GAGGAG | 2 cut(s) | 874, 1569 |
| BseSI | GKGCMC | 7 cut(s) | 230, 246, 1218, 1413, 1563, 4200, 4387 |
| BseXI | GCAGC | 8 cut(s) | 535, 1988, 2059, 2167, 2365, 3138, 3247, 4282 |
| BseYI | CCCAGC | 3 cut(s) | 4832, 5168, 5432 |
| BsgI | GTGCAG | 3 cut(s) | 122, 1631, 3246 |
| Bsh1236I | CGCG | 2 cut(s) | 504, 3648 |
| BshNI | GGYRCC | 3 cut(s) | 243, 1558, 1629 |
| BshTI | ACCGGT | 1 cut(s) | 4241 |
| BsiHKAI | GWGCWC | 6 cut(s) | 114, 520, 1551, 2254, 3539, 4262 |
| BsiHKCI | CYCGRG | 2 cut(s) | 229, 4706 |
| BslFI | GGGAC | 8 cut(s) | 1505, 1936, 4230, 4659, 4666, 4680, 4722, 4974 |
| BsmBI | CGTCTC | 2 cut(s) | 5289, 5331 |
| BsmFI | GGGAC | 8 cut(s) | 1505, 1936, 4230, 4659, 4666, 4680, 4722, 4974 |
| BsmI | GAATGC | 7 cut(s) | 63, 562, 2959, 3100, 3787, 4420, 4601 |
| Bso31I | GGTCTC | 2 cut(s) | 113, 763 |
| BsoBI | CYCGRG | 2 cut(s) | 229, 4706 |
| Bsp119I | TTCGAA | 2 cut(s) | 2196, 3766 |
| Bsp120I | GGGCCC | 1 cut(s) | 1214 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 519, 4535 |
| Bsp19I | CCATGG | 2 cut(s) | 1130, 2289 |
| Bsp68I | TCGCGA | 1 cut(s) | 3648 |
| BspACI | CCGC | 8 cut(s) | 29, 46, 504, 507, 2537, 3282, 3749, 3819 |
| BspFNI | CGCG | 2 cut(s) | 504, 3648 |
| BspHI | TCATGA | 5 cut(s) | 282, 1551, 3777, 4015, 4504 |
| BspLI | GGNNCC | 7 cut(s) | 245, 1216, 1217, 1560, 1631, 2305, 4246 |
| BspMAI | CTGCAG | 2 cut(s) | 643, 4300 |
| BspMI | ACCTGC | 6 cut(s) | 140, 892, 2475, 4945, 4966, 4987 |
| BspOI | GCTAGC | 1 cut(s) | 3141 |
| BspPI | GGATC | 6 cut(s) | 155, 1091, 2814, 3515, 3754, 3932 |
| BspQI | GCTCTTC | 1 cut(s) | 3882 |
| BspT104I | TTCGAA | 2 cut(s) | 2196, 3766 |
| BspT107I | GGYRCC | 3 cut(s) | 243, 1558, 1629 |
| BspTI | CTTAAG | 1 cut(s) | 1016 |
| BspTNI | GGTCTC | 2 cut(s) | 113, 763 |
| BsrDI | GCAATG | 3 cut(s) | 2839, 2921, 3684 |
| BsrFI | RCCGGY | 3 cut(s) | 25, 4241, 5104 |
| BssAI | RCCGGY | 3 cut(s) | 25, 4241, 5104 |
| BssSI | CACGAG | 2 cut(s) | 2229, 3171 |
| BssT1I | CCWWGG | 5 cut(s) | 466, 1130, 2289, 3343, 3620 |
| Bst2BI | CACGAG | 2 cut(s) | 2229, 3171 |
| Bst6I | CTCTTC | 5 cut(s) | 1373, 2933, 3543, 3588, 3882 |
| BstAFI | CTTAAG | 1 cut(s) | 1016 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 4304 |
| BstBAI | YACGTR | 3 cut(s) | 936, 1155, 5355 |
| BstBI | TTCGAA | 2 cut(s) | 2196, 3766 |
| BstDSI | CCRYGG | 3 cut(s) | 1130, 1742, 2289 |
| BstEII | GGTNACC | 1 cut(s) | 879 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 796 |
| BstFNI | CGCG | 2 cut(s) | 504, 3648 |
| BstH2I | RGCGCY | 1 cut(s) | 1342 |
| BstHHI | GCGC | 1 cut(s) | 1341 |
| BstNSI | RCATGY | 8 cut(s) | 207, 423, 1507, 1511, 1949, 2788, 2801, 3862 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 4242 |
| BstPI | GGTNACC | 1 cut(s) | 879 |
| BstSLI | GKGCMC | 7 cut(s) | 230, 246, 1218, 1413, 1563, 4200, 4387 |
| BstUI | CGCG | 2 cut(s) | 504, 3648 |
| BstV1I | GCAGC | 8 cut(s) | 535, 1988, 2059, 2167, 2365, 3138, 3247, 4282 |
| BstV2I | GAAGAC | 2 cut(s) | 293, 1762 |
| BstX2I | RGATCY | 2 cut(s) | 2128, 2806 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2158, 3317 |
| BstYI | RGATCY | 2 cut(s) | 2128, 2806 |
| BsuI | GTATCC | 6 cut(s) | 1609, 1645, 2387, 3896, 3973, 4661 |
| BtgI | CCRYGG | 3 cut(s) | 1130, 1742, 2289 |
| BtgZI | GCGATG | 2 cut(s) | 322, 5001 |
| BtrI | CACGTC | 1 cut(s) | 4680 |
| BtsI | GCAGTG | 2 cut(s) | 1309, 4305 |
| BtsIMutI | CAGTG | 8 cut(s) | 1309, 2616, 3101, 3296, 3467, 4100, 4305, 4491 |
| BtuMI | TCGCGA | 1 cut(s) | 3648 |
| BveI | ACCTGC | 6 cut(s) | 140, 892, 2475, 4945, 4966, 4987 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1166 |
| CciI | TCATGA | 5 cut(s) | 282, 1551, 3777, 4015, 4504 |
| CfoI | GCGC | 1 cut(s) | 1341 |
| Cfr10I | RCCGGY | 3 cut(s) | 25, 4241, 5104 |
| Cfr13I | GGNCC | 8 cut(s) | 232, 1214, 1215, 1593, 1967, 2304, 2432, 4244 |
| Cfr9I | CCCGGG | 2 cut(s) | 229, 4706 |
| CsiI | ACCWGGT | 2 cut(s) | 1228, 2211 |
| CspAI | ACCGGT | 1 cut(s) | 4241 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 922, 957, 1731, 1766 |
| DraI | TTTAAA | 2 cut(s) | 2712, 3955 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 295, 2439 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 295, 2439 |
| EaeI | YGGCCR | 3 cut(s) | 1745, 2918, 4206 |
| Eam1104I | CTCTTC | 5 cut(s) | 1373, 2933, 3543, 3588, 3882 |
| EarI | CTCTTC | 5 cut(s) | 1373, 2933, 3543, 3588, 3882 |
| EciI | GGCGGA | 1 cut(s) | 44 |
| Ecl136II | GAGCTC | 1 cut(s) | 1549 |
| Eco130I | CCWWGG | 5 cut(s) | 466, 1130, 2289, 3343, 3620 |
| Eco147I | AGGCCT | 1 cut(s) | 991 |
| Eco24I | GRGCYC | 8 cut(s) | 74, 389, 1218, 1551, 2230, 3282, 4541, 5393 |
| Eco31I | GGTCTC | 2 cut(s) | 113, 763 |
| Eco47I | GGWCC | 3 cut(s) | 2304, 2432, 4244 |
| Eco53kI | GAGCTC | 1 cut(s) | 1549 |
| Eco57I | CTGAAG | 6 cut(s) | 501, 2957, 3068, 3444, 3807, 3843 |
| Eco88I | CYCGRG | 2 cut(s) | 229, 4706 |
| Eco91I | GGTNACC | 1 cut(s) | 879 |
| EcoICRI | GAGCTC | 1 cut(s) | 1549 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 796 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1215 |
| EcoO65I | GGTNACC | 1 cut(s) | 879 |
| EcoT14I | CCWWGG | 5 cut(s) | 466, 1130, 2289, 3343, 3620 |
| EcoT22I | ATGCAT | 2 cut(s) | 421, 1509 |
| EcoT38I | GRGCYC | 8 cut(s) | 74, 389, 1218, 1551, 2230, 3282, 4541, 5393 |
| ErhI | CCWWGG | 5 cut(s) | 466, 1130, 2289, 3343, 3620 |
| Esp3I | CGTCTC | 2 cut(s) | 5289, 5331 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1754, 1786, 2963, 2995 |
| FaqI | GGGAC | 8 cut(s) | 1505, 1936, 4230, 4659, 4666, 4680, 4722, 4974 |
| FauI | CCCGC | 1 cut(s) | 3289 |
| FauNDI | CATATG | 1 cut(s) | 1952 |
| FbaI | TGATCA | 3 cut(s) | 352, 1114, 1306 |
| FblI | GTMKAC | 1 cut(s) | 3411 |
| FriOI | GRGCYC | 8 cut(s) | 74, 389, 1218, 1551, 2230, 3282, 4541, 5393 |
| GlaI | GCGC | 1 cut(s) | 1340 |
| GsaI | CCCAGC | 3 cut(s) | 4836, 5172, 5436 |
| GsuI | CTGGAG | 7 cut(s) | 1565, 2180, 3020, 4412, 4467, 4752, 5403 |
| HaeII | RGCGCY | 1 cut(s) | 1342 |
| HhaI | GCGC | 1 cut(s) | 1341 |
| Hin6I | GCGC | 1 cut(s) | 1339 |
| HinP1I | GCGC | 1 cut(s) | 1339 |
| HincII | GTYRAC | 8 cut(s) | 1379, 2014, 2478, 2932, 3568, 3601, 3928, 5450 |
| HindII | GTYRAC | 8 cut(s) | 1379, 2014, 2478, 2932, 3568, 3601, 3928, 5450 |
| HpaI | GTTAAC | 5 cut(s) | 2014, 2478, 2932, 3601, 3928 |
| Hpy99I | CGWCG | 3 cut(s) | 4045, 4098, 5062 |
| HpyCH4IV | ACGT | 8 cut(s) | 935, 1154, 2361, 4679, 5057, 5282, 5324, 5354 |
| HpySE526I | ACGT | 8 cut(s) | 935, 1154, 2361, 4679, 5057, 5282, 5324, 5354 |
| HspAI | GCGC | 1 cut(s) | 1339 |
| KroI | GCCGGC | 1 cut(s) | 25 |
| KroNI | GCCGGC | 1 cut(s) | 27 |
| Ksp22I | TGATCA | 3 cut(s) | 352, 1114, 1306 |
| KspAI | GTTAAC | 5 cut(s) | 2014, 2478, 2932, 3601, 3928 |
| LguI | GCTCTTC | 1 cut(s) | 3882 |
| LmnI | GCTCC | 8 cut(s) | 1198, 1318, 1336, 1546, 1729, 1885, 3039, 3796 |
| Lsp1109I | GCAGC | 8 cut(s) | 535, 1988, 2059, 2167, 2365, 3138, 3247, 4282 |
| MabI | ACCWGGT | 2 cut(s) | 1228, 2211 |
| MaeII | ACGT | 8 cut(s) | 935, 1154, 2361, 4679, 5057, 5282, 5324, 5354 |
| MfeI | CAATTG | 4 cut(s) | 177, 322, 2061, 4419 |
| MflI | RGATCY | 2 cut(s) | 2128, 2806 |
| MlsI | TGGCCA | 2 cut(s) | 2920, 4208 |
| MluNI | TGGCCA | 2 cut(s) | 2920, 4208 |
| MlyI | GAGTC | 4 cut(s) | 677, 1165, 2183, 3215 |
| MmeI | TCCRAC | 8 cut(s) | 3132, 4086, 4570, 4772, 4805, 4931, 4952, 5183 |
| Mox20I | TGGCCA | 2 cut(s) | 2920, 4208 |
| Mph1103I | ATGCAT | 2 cut(s) | 421, 1509 |
| MreI | CGCCGGCG | 1 cut(s) | 25 |
| MroNI | GCCGGC | 1 cut(s) | 25 |
| MroXI | GAANNNNTTC | 4 cut(s) | 603, 648, 2989, 3305 |
| MscI | TGGCCA | 2 cut(s) | 2920, 4208 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1347, 1556, 2796, 3184, 3290, 4020 |
| Msp20I | TGGCCA | 2 cut(s) | 2920, 4208 |
| MspA1I | CMGCKG | 3 cut(s) | 48, 2158, 3821 |
| MspCI | CTTAAG | 1 cut(s) | 1016 |
| MunI | CAATTG | 4 cut(s) | 177, 322, 2061, 4419 |
| Mva1269I | GAATGC | 7 cut(s) | 63, 562, 2959, 3100, 3787, 4420, 4601 |
| MvnI | CGCG | 2 cut(s) | 504, 3648 |
| NaeI | GCCGGC | 1 cut(s) | 27 |
| NciI | CCSGG | 8 cut(s) | 74, 230, 231, 1854, 1970, 4623, 4707, 4708 |
| NcoI | CCATGG | 2 cut(s) | 1130, 2289 |
| NdeI | CATATG | 1 cut(s) | 1952 |
| NgoMIV | GCCGGC | 1 cut(s) | 25 |
| NheI | GCTAGC | 1 cut(s) | 3137 |
| NlaIV | GGNNCC | 7 cut(s) | 245, 1216, 1217, 1560, 1631, 2305, 4246 |
| NmeAIII | GCCGAG | 2 cut(s) | 145, 1052 |
| NmuCI | GTSAC | 7 cut(s) | 842, 879, 1168, 1459, 3207, 4098, 4554 |
| NruI | TCGCGA | 1 cut(s) | 3648 |
| NsiI | ATGCAT | 2 cut(s) | 421, 1509 |
| NspI | RCATGY | 8 cut(s) | 207, 423, 1507, 1511, 1949, 2788, 2801, 3862 |
| NspV | TTCGAA | 2 cut(s) | 2196, 3766 |
| PaeI | GCATGC | 1 cut(s) | 423 |
| PagI | TCATGA | 5 cut(s) | 282, 1551, 3777, 4015, 4504 |
| PaqCI | CACCTGC | 4 cut(s) | 892, 4945, 4966, 4987 |
| PceI | AGGCCT | 1 cut(s) | 991 |
| PciI | ACATGT | 4 cut(s) | 203, 1945, 2784, 2797 |
| PciSI | GCTCTTC | 1 cut(s) | 3882 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 5492 |
| PctI | GAATGC | 7 cut(s) | 63, 562, 2959, 3100, 3787, 4420, 4601 |
| PdiI | GCCGGC | 1 cut(s) | 27 |
| PdmI | GAANNNNTTC | 4 cut(s) | 603, 648, 2989, 3305 |
| PflFI | GACNNNGTC | 1 cut(s) | 1361 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 694, 5432 |
| PfoI | TCCNGGA | 3 cut(s) | 797, 3036, 5362 |
| PinAI | ACCGGT | 1 cut(s) | 4241 |
| PleI | GAGTC | 4 cut(s) | 677, 1165, 2183, 3214 |
| PpsI | GAGTC | 4 cut(s) | 677, 1165, 2183, 3214 |
| Ppu21I | YACGTR | 3 cut(s) | 936, 1155, 5355 |
| PscI | ACATGT | 4 cut(s) | 203, 1945, 2784, 2797 |
| PshAI | GACNNNNGTC | 1 cut(s) | 4242 |
| PshBI | ATTAAT | 2 cut(s) | 2091, 3372 |
| PsiI | TTATAA | 2 cut(s) | 1781, 2135 |
| Psp124BI | GAGCTC | 1 cut(s) | 1551 |
| Psp1406I | AACGTT | 1 cut(s) | 2361 |
| PspEI | GGTNACC | 1 cut(s) | 879 |
| PspFI | CCCAGC | 3 cut(s) | 4832, 5168, 5432 |
| PspN4I | GGNNCC | 7 cut(s) | 245, 1216, 1217, 1560, 1631, 2305, 4246 |
| PspOMI | GGGCCC | 1 cut(s) | 1214 |
| PspPI | GGNCC | 8 cut(s) | 232, 1214, 1215, 1593, 1967, 2304, 2432, 4244 |
| PsrI | GAACNNNNNNTAC | 6 cut(s) | 695, 727, 1072, 1104, 4416, 4448 |
| PstI | CTGCAG | 2 cut(s) | 643, 4300 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1166 |
| PsuI | RGATCY | 2 cut(s) | 2128, 2806 |
| PsyI | GACNNNGTC | 1 cut(s) | 1361 |
| PvuII | CAGCTG | 1 cut(s) | 2158 |
| RruI | TCGCGA | 1 cut(s) | 3648 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1347, 1556, 2796, 3184, 3290, 4020 |
| SacI | GAGCTC | 1 cut(s) | 1551 |
| SapI | GCTCTTC | 1 cut(s) | 3882 |
| Sau96I | GGNCC | 8 cut(s) | 232, 1214, 1215, 1593, 1967, 2304, 2432, 4244 |
| ScaI | AGTACT | 1 cut(s) | 1542 |
| SchI | GAGTC | 4 cut(s) | 677, 1165, 2183, 3215 |
| SexAI | ACCWGGT | 2 cut(s) | 1228, 2211 |
| SfuI | TTCGAA | 2 cut(s) | 2196, 3766 |
| SgrAI | CRCCGGYG | 1 cut(s) | 25 |
| SinI | GGWCC | 3 cut(s) | 2304, 2432, 4244 |
| SmaI | CCCGGG | 2 cut(s) | 231, 4708 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1347, 1556, 2796, 3184, 3290, 4020 |
| SmlI | CTYRAG | 3 cut(s) | 248, 1016, 3498 |
| SmoI | CTYRAG | 3 cut(s) | 248, 1016, 3498 |
| SphI | GCATGC | 1 cut(s) | 423 |
| SrfI | GCCCGGGC | 1 cut(s) | 231 |
| SseBI | AGGCCT | 1 cut(s) | 991 |
| SsiI | CCGC | 8 cut(s) | 29, 46, 504, 507, 2537, 3282, 3749, 3819 |
| SspI | AATATT | 2 cut(s) | 1183, 1684 |
| SstI | GAGCTC | 1 cut(s) | 1551 |
| StuI | AGGCCT | 1 cut(s) | 991 |
| StyI | CCWWGG | 5 cut(s) | 466, 1130, 2289, 3343, 3620 |
| TaiI | ACGT | 8 cut(s) | 938, 1157, 2364, 4682, 5060, 5285, 5327, 5357 |
| TaqI | TCGA | 7 cut(s) | 342, 2196, 3766, 3880, 4134, 4231, 4278 |
| TaqII | GACCGA | 1 cut(s) | 4086 |
| TatI | WGTACW | 4 cut(s) | 206, 1540, 3159, 5481 |
| TauI | GCSGC | 2 cut(s) | 507, 510 |
| TscAI | CASTG | 8 cut(s) | 1309, 2623, 3108, 3303, 3467, 4107, 4305, 4491 |
| TseFI | GTSAC | 7 cut(s) | 842, 879, 1168, 1459, 3207, 4098, 4554 |
| TseI | GCWGC | 8 cut(s) | 523, 1976, 2072, 2155, 2353, 3126, 3260, 4295 |
| Tsp45I | GTSAC | 7 cut(s) | 842, 879, 1168, 1459, 3207, 4098, 4554 |
| TspGWI | ACGGA | 3 cut(s) | 592, 3761, 4644 |
| TspMI | CCCGGG | 2 cut(s) | 229, 4706 |
| TspRI | CASTG | 8 cut(s) | 1309, 2623, 3108, 3303, 3467, 4107, 4305, 4491 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1361 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 694, 5432 |
| Vha464I | CTTAAG | 1 cut(s) | 1016 |
| VpaK11BI | GGWCC | 3 cut(s) | 2304, 2432, 4244 |
| VspI | ATTAAT | 2 cut(s) | 2091, 3372 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 796 |
| XceI | RCATGY | 8 cut(s) | 207, 423, 1507, 1511, 1949, 2788, 2801, 3862 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1226, 1349, 1749 |
| XmaI | CCCGGG | 2 cut(s) | 229, 4706 |
| XmaJI | CCTAGG | 1 cut(s) | 3343 |
| XmiI | GTMKAC | 1 cut(s) | 3411 |
| XmnI | GAANNNNTTC | 4 cut(s) | 603, 648, 2989, 3305 |
| ZrmI | AGTACT | 1 cut(s) | 1542 |
| Zsp2I | ATGCAT | 2 cut(s) | 421, 1509 |