Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002476

Physical Location & Seq

Genomic Coordinates Reverse (-)

9395588 .. 9403673

Gene Structure 8086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G009340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4989 bp

ATGTTCTCTACTGGGGTCTTTATCTTGGCTAATGAATTTATGGAAGATGTTAAGTTTAAACAAGCTTTGAGAATCAAGAAGCCTAAAGATAGGCTAAAAAAGTTTGTGGATGCATGCAAAAACAAGACCAAGTGTGAAGGTGGTGATGAAATTGATCTGCAGGGCTCAAAATCCGGTCAACATGTCAAGCAAAGTCGGGGTGGCTGTGGTGCTCAGCAGCCCAAGTTCTCTATGGCTGGTTTGGAACTGGTTGCAGAGTACAAATCACAAAGGAAACAATATGATGAGGAACAGCTTCCTGAACCAGTGGAAAGGAAACAAATCCTTACTGCAGAAAAGGTTCTTAGCTTATTAAAGAGGATAAGTGATGAGGACTGCCAATTCTTGGGACTGAACCCTGAATATGCTCGACCAGATTGGATGATTTTACAAGTTCTTCCTATTCCTCCACCAGCTGTGAGACCCCCAGTGATGATGAGCAGCTCTGCCATGAGTGAGGATGATTTAACACATCAGTTGTCCATGATTATTCGCCACAACGAGAATTTGAGGAAACAGGAAAAACATGGTTCAGCTGCTCATATCATTTCACAGTTTACGCAAATCTTGCAATACTACATATCCACATATTTTGACAATAGCTTGCCTGGACTACCAAAGGCTGCTCATGGATCGACAAAGAGGCCTATTAAATCAATATGTTGTAGGCTTAAGGCAAAGCATGGCCGGATTAGAGGAAACTTGATGGGGAAGAGAGTCGATTTCTCAGCACGGACAGTTATTACACCAGATCCAAACCTTAGCCTTGATCAATTAGGAGTACCATGGAGCATTGCTATGAATCTCACATACACAGAGACTGTGACTCCATTTAATAAAGAAGGGTTGAAGGAGCTTGTTGAGTATGGGCCGCATCCCCCACCTGGACTAACTGGTGCAAAGTACATCATACGAGATGATGGCCAAAGAATCGATCTTCGTTACGTGAAGAAAGATAGTGATCATCATTTGGAGCTTGGTTATAAGGTGGAGCGTCATCTAAAGGATGGAGACATTGTCCTCTTAAATCGTCAGCCTAGTCTCCATAAAATGTCATTCATGGGGCATAGAATCAAGATCATGCCATACTCAACTCTTCGCTTGAACTTATCTGTAACTTCACCTTACAATGCTGATTTTGATGGGGATGAAATGAACGTCCATGTTCCTCAGTCATTTGAAACTAGGGCAGAAGCTCTGGAGCTCATGATGGTGCCCAAATGCATTGTTTCCCCTCAGTCGAACCGGCCTGTAATGGGAATAGTCCAAGATACACTGTTAGGTGCTCGAAAAATCACAAAAAGGGATACCTTCATAGAGAAGGACGTTTTTATGAACATCTTGATGTGGTGGGAGGATTTTGACGGGAAAGTGCCTGCTCCTGCAATATTGAAGCCACGACCTCTTTGGACTGGGAAACAGGTTTTTAATCTTATAATACCGAAACAGATAAATCTCCAGAGAACTTCAGCGTGGCACTCTGAATCAGAAAGTGGTAACATTACCCCTGGTGATACTTTCGTTAGAATAGAAAAAGGGGAGTTACTTTCTGGAACTCTCTGCAAAAGGGCACTTGGGACTTCTACAGGAAGTCTTATACATGTCATATGGGAAGAGGTTGGTCCAGATGCAGCCTCCAAATTCCTTAGTAATACCCAGTGGCTTGTGAATTACTGGCTGTTGCAGGATGGTTTTAGCATTGGAATTGGAGATACAATTGCCGATGCGGCAACAATGGAAAAGATCAATGCAACTATTTACAAGGCAAAAAATGAAGTGAAAGAACTTATCAGTAAAGCCCAATCCAGGCAGCTGGAGGCTGAACCAGGACGAACTATGATGGAATCCTTTGAAAACAAAGTGAACCAGGTGTTGAATAGGGCTCGTGATGATGCTGGAAGTAGTGCCCAGAAGAGTTTATCTGAGAGTAACAATCTCAAGGCCATGGTCACAGCCGGATCGAAGGGAAGTTTTATCAATATATCGCAGATGACTGCTTGTGTGGGACAGCAGAATGTTGAGGGTAAGCGAATTCCGTATGGGTTCACAGACCGGACTTTGCCCCATTTTACGAAGGACGATTATGGACCGGAAAGTCGTGGCTTCGTAGAGAATTCCTACCTGCGTGGATTAACTCCACAGGAGTTTTATTTTCATGCTATGGGTGGTAGGGAAGGCATTATTGATACTGCAGTTAAGACATCTGAGACTGGGTATATCCAGAGGAGACTGGTGAAGGCTATGGAGGATATTATGGTTAAATATGATGGGACTGTCAGAAATTCATTGGGGGATGTAATACAGTTTCTCTATGGGGAAGATGGAATGGACGCAACTTTCACTTTTGAGTTTGATGATAGAAATTGGAATCCGGACTATATGTTGCCTGAATGTGTTGAGGATCTAAAAACTATTGGAGAGTTTCGCTGGGCATTGGACGCTGAAGTTTCAAAACTTGAAGCTGATAGGATTCAACTTGGCACAGAGATTGCTGTCACAGGTGATAATACTTGGCCGTTGCCTGTTAACCTAAAGAGGCTCATTTGGAATGCACAAAAAACTTTCAAAATTGACTTCCGAAGCACTTCTGATATGCAACCAATGGAAATTATAGAAGCTATTGATAATCTTCAAGAGAGGCTGAAGGTTGTTCCTGGTGATGACTTGTTAAGTGTTGAAGCTCAAAATAATGCTACACTCTTTTTCAACATTTTGCTTCGCAGCACTTTTGCTAGCAAAAGAGTGCTAAAAGAGTACAAGCTTACTCGTGAAGCATTTGAGTGGGTTATTGGGGAGATAGAGGCACGCTTCCTGCAATCACTTGTAGCACCTAGGGAAATGATCGGCATTGTTGCTGCACAATCTATTGGCGAGCCTGCCACTCAGATGACTCTCAATACCTTCCACTATGCCGGTGTAAGTGCAAAGAATGTTACTCTAGGTGTTCCAAGGTTGAAGGAAATTATTGATGTATCTAAGCGTATCAAAACACCATCTCTCTCTATCTACTTGAAGCCTGAAGCTAATAAAACCAAGGAGAAGGCCAAGAATGTCCAGTGTGCTTTGGAATACACTAACCTCGGAAGTGTTACTCAAGCTACAGAATTGTGGTATGATCCGGACCCTATGAGCACAATAATTGAAGAGGATCTTGAATTTGTCCAATCTTACTATGAAATGCCAGATGAAGAGGTTAGCCCTGAAAAAATATCACCTTGGTTGCTTCGCATGGAGATGAATCGTGAAATGATGGTGGATAAGAAACTGAGTATGGCTGACATTGCTGAGAAGATTAATTGTGAATATAGTGGTAAAATACAGTGTATCTTTAATGATGACAATTCTGAGAAGTTGATACTACGAATCCGTCTCATGAATGAAGAAGCTCCACATGAGGAAGTGAATGATCAATCTGAAGATGATGTTTTCCTGAAGATGATTGAGAGTAACATGCTTACAAAAATGGCTCTTCAAGGGATCCCAGAGATTAAAAAAGTGTTCATAAAGCATGGTAAAGTTAACAAGTTTGATCAGAATGAAGGGTTTATTGCGGAGCAAGAGTGGATGCTGGATACTGAAGGTGTTAATCTCTTAGCTGTCATGTGCCATGAGGATGTTGATGCCAGGAGAACGACAAGCAATCATTTGTATGAAATTATGGAAGTTCTTGGGATTGAGGCAGCTCGACGGGCATTGCTGGATGAGTTGCGTAATGTTATATCATTTGATGGATCCTATGTAAATTACCGGCACCTGGCCATTCTTTGTGATACCATGACCTATCGTGGCTACTTGATGGCCATCACTCGACATGGTATCAATCGAAAGGACACTGGTCCTATGATGCGATGCTCGTTTGAACAAACAGTGGACATGCTGCTGGATGCTTCAGTTTTTGCAGAAACAGATCATCTGAGGGGTGTAACAGAAAACATAATGCTGGGCAAGCTGGCACCAATTGGCACTGGAGACTGTGCCCTATATCTGAATGAAGAGATGTTACAAAATGCTATGGAAGTGCAGCTACCTGGTTATATGGATGGCCTTGATGTTGGCATGACACCATCCCATTCTCCATACCTTGAGAGCATACTGTCTCCTAGTTATTTGCGGAGTCCCAGTAATCCTCTTTCACCAGTGTTGGATGCAGCACAGTTTTCTCCATACGTTAGGGGAATTCCCTTTTCTCCTACTTCATCTCCAGGCAACATCCCATCATCTCTTGGCCACTATCTGCCATCCTTTGTATACAGTCCCACCTCCCCATACTATAGCCCCACGTCACCAGGTTATAGTCCAACCAGTCCCCCCTATTCTCCTTCGCGTCCATCTTTCACATCACCAGGTTATACTCCAACCAGTCCTCCCTATTCTCCTTCACGTCCATCTTTCACATCACCAGGTTTTAGTCCAACCAGTCCTGTCTATTCTCCTACAAGTCCATATTACTCACCGACCTCACCCTACTATAGCCCTATCTCTCCAACATCAACACCTTATAGCCCAACTTCACCTGCATACGACCGAGCACCACCGCCTTACGGCCTGACTTTACCTGCATATAGTCCCACTTCTCCTTTGTACACCCCAACATCACCCTCCTACAGCCCGACTTTCCCCACAAACATCCCCACTTCGCTTTCCTACAGCCCCACATCGCCATCATACAGCCCCACATCTCCCTCCTACAGCCCTAGCTCCCCATACGATAGCCTGACATCTCCAGGTTACAACCCAACCTCTCCCAGTTATAGCCTGACATCTCTGTACAGCAGCGCAACTTCACTGGCATATTCCCCAACATCTCCAACTTACTCTCCATCGAGCCCCACTTACAGTCCCAGCAGCCTATTCACCACCTCTGCAGTGAGCCCAGACTATTCCCCAAGTTCTCCACAGTACAGTCCAAGTGGTGAGTACTCATTGCGACATAGCGAAAAGGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0005773 GO:0005911 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030054 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0055029 GO:0055044 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_R

Protein Analysis

1662

Amino Acids

186.09

Weight (kDa)

5.64

Isoelectric Point (pI)

57.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_1	PF04997	14 - 248	1.3e-59	RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2	PF00623	250 - 418	2.8e-69	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3	PF04983	421 - 585	1.1e-53	RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4	PF05000	612 - 716	1e-38	RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5	PF04998	723 - 1292	2.8e-104	RNA polymerase Rpb1, domain 5
RNA_pol_Rpb1_6	PF04992	788 - 953	2.1e-56	RNA polymerase Rpb1, domain 6
RNA_pol_Rpb1_7	PF04990	1038 - 1171	6.9e-50	RNA polymerase Rpb1, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35800 AT4G35800
fragaria_vesca	FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070
malus_domestica	MD02G1123200.v1.1 MD02G1123400.v1.1 MD02G1125500.v1.1 MD02G1125800.v1.1 MD15G1237200.v1.1
prunus_persica	Prupe.7G175200_v2.0.a1
pyrus_communis	pycom02g09610 pycom15g21110
rosa_chinensis	RchiOBHm_Chr2g0098321 RchiOBHm_Chr2g0098331
rosa_laevigata	RLG00000016790 RLG00000016791
rosa_multiflora	Rmu_co8358581.1_g000001 Rmu_sc0003434.1_g000008 Rmu_sc0023772.1_g000002 Rmu_sc0042863.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144060 Rroxscaffold_2G00144070
rosa_rugosa	Rorug02G0072000 Rorug02G0072000 Rorug02G0072100
rosa_samantha	Rh2AG119100 Rh2AG119200 Rh2BG122300 Rh2BG122400 Rh2CG123900 Rh2CG124000 Rh2DG123900 Rh2DG124000
rosa_wichuraiana	Rw2G009330 Rw2G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1023, 1475
AarI	CACCTGC	1 cut(s)	4561
AasI	GACNNNNNNGTC	1 cut(s)	2133
Acc36I	ACCTGC	3 cut(s)	2169, 4561, 4603
AccB1I	GGYRCC	3 cut(s)	1252, 3789, 3991
AccB7I	CCANNNNNTGG	1 cut(s)	385
AccI	GTMKAC	1 cut(s)	4287
AccII	CGCG	1 cut(s)	4363
AccIII	TCCGGA	2 cut(s)	2410, 3157
AciI	CCGC	5 cut(s)	911, 1766, 3590, 4150, 4574
AcoI	YGGCCR	6 cut(s)	724, 961, 2552, 3795, 3837, 4264
AcsI	RAATTY	8 cut(s)	35, 544, 1679, 2070, 2152, 2320, 3194, 4215
AcuI	CTGAAG	8 cut(s)	1491, 2502, 2702, 3078, 3474, 3491, 3636, 3912
AfaI	GTAC	8 cut(s)	260, 822, 944, 2795, 4622, 4808, 4940, 4958
AfiI	CCNNNNNNNGG	6 cut(s)	385, 923, 1295, 1845, 3793, 4580
AflII	CTTAAG	1 cut(s)	710
AflIII	ACRYGT	2 cut(s)	181, 1639
AjiI	CACGTC	2 cut(s)	4320, 4421
Alw21I	GWGCWC	5 cut(s)	214, 1245, 1327, 3173, 4570
Alw26I	GTCTC	9 cut(s)	454, 851, 1044, 1085, 2240, 2260, 3413, 4002, 4140
AlwNI	CAGNNNCTG	1 cut(s)	860
Aor13HI	TCCGGA	2 cut(s)	2410, 3157
ApoI	RAATTY	8 cut(s)	35, 544, 1679, 2070, 2152, 2320, 3194, 4215
AseI	ATTAAT	1 cut(s)	3333
Asp700I	GAANNNNTTC	3 cut(s)	294, 339, 2623
AspA2I	CCTAGG	1 cut(s)	2870
AspLEI	GCGC	1 cut(s)	4817
AspS9I	GGNCC	5 cut(s)	908, 1661, 2126, 3160, 3875
AsuNHI	GCTAGC	1 cut(s)	2771
AvaII	GGWCC	4 cut(s)	1661, 2126, 3160, 3875
AvrII	CCTAGG	1 cut(s)	2870
BaeGI	GKGCMC	4 cut(s)	1257, 1612, 1948, 4018
BaeI	ACNNNNGTAYC	4 cut(s)	1545, 1578, 2217, 2250
BalI	TGGCCA	4 cut(s)	963, 3797, 3839, 4266
BamHI	GGATCC	2 cut(s)	3516, 3770
BanI	GGYRCC	3 cut(s)	1252, 3789, 3991
BanII	GRGCYC	5 cut(s)	167, 1245, 1924, 4868, 4913
BarI	GAAGNNNNNNTAC	4 cut(s)	4023, 4047, 4055, 4079
BauI	CACGAG	2 cut(s)	1923, 2805
Bbv12I	GWGCWC	5 cut(s)	214, 1245, 1327, 3173, 4570
BceAI	ACGGC	2 cut(s)	2539, 4597
BciVI	GTATCC	2 cut(s)	1339, 3604
BclI	TGATCA	4 cut(s)	808, 1000, 3445, 3568
BcoDI	GTCTC	9 cut(s)	454, 851, 1044, 1085, 2240, 2260, 3413, 4002, 4140
BfaI	CTAG	7 cut(s)	1077, 1224, 2772, 2871, 2978, 4140, 4734
BfrI	CTTAAG	1 cut(s)	710
BfuAI	ACCTGC	3 cut(s)	2169, 4561, 4603
BfuI	GTATCC	2 cut(s)	1339, 3604
BglI	GCCNNNNNGGC	1 cut(s)	1766
BlnI	CCTAGG	1 cut(s)	2870
BlpI	GCTNAGC	1 cut(s)	213
BmcAI	AGTACT	1 cut(s)	4958
Bme18I	GGWCC	4 cut(s)	1661, 2126, 3160, 3875
BmgBI	CACGTC	2 cut(s)	4320, 4421
BmgT120I	GGNCC	5 cut(s)	908, 1661, 2126, 3160, 3875
BmiI	GGNNCC	6 cut(s)	1254, 3162, 3518, 3772, 3791, 3993
BmrI	ACTGGG	7 cut(s)	21, 461, 1461, 1690, 2259, 4152, 4779
BmtI	GCTAGC	1 cut(s)	2775
BmuI	ACTGGG	7 cut(s)	21, 461, 1461, 1690, 2259, 4152, 4779
BoxI	GACNNNNGTC	1 cut(s)	3873
BpmI	CTGGAG	6 cut(s)	1259, 1481, 1874, 4026, 4224, 4746
Bpu10I	CCTNAGC	1 cut(s)	800
Bpu1102I	GCTNAGC	1 cut(s)	213
BpuEI	CTTGAG	3 cut(s)	1961, 3117, 4142
Bsa29I	ATCGAT	1 cut(s)	972
BsaAI	YACGTR	1 cut(s)	985
BsaBI	GATNNNNATC	2 cut(s)	999, 3839
BsaI	GGTCTC	1 cut(s)	454
BsaJI	CCNNGG	8 cut(s)	824, 1546, 1983, 2870, 2987, 3072, 3118, 3254
BsaWI	WCCGGW	5 cut(s)	173, 2091, 2128, 2410, 3157
Bsc4I	CCNNNNNNNGG	6 cut(s)	385, 923, 1295, 1845, 3793, 4580
Bse118I	RCCGGY	3 cut(s)	1284, 2951, 3786
Bse3DI	GCAATG	4 cut(s)	831, 3318, 3731, 4961
Bse8I	GATNNNNATC	2 cut(s)	999, 3839
BseAI	TCCGGA	2 cut(s)	2410, 3157
BseCI	ATCGAT	1 cut(s)	972
BseDI	CCNNGG	8 cut(s)	824, 1546, 1983, 2870, 2987, 3072, 3118, 3254
BseJI	GATNNNNATC	2 cut(s)	999, 3839
BseLI	CCNNNNNNNGG	6 cut(s)	385, 923, 1295, 1845, 3793, 4580
BseMI	GCAATG	4 cut(s)	831, 3318, 3731, 4961
BseRI	GAGGAG	1 cut(s)	2278
BseSI	GKGCMC	4 cut(s)	1257, 1612, 1948, 4018
BseYI	CCCAGC	3 cut(s)	2466, 3979, 4880
BsgI	GTGCAG	2 cut(s)	2880, 4079
Bsh1236I	CGCG	1 cut(s)	4363
Bsh1285I	CGRYCG	1 cut(s)	4564
BshNI	GGYRCC	3 cut(s)	1252, 3789, 3991
BshVI	ATCGAT	1 cut(s)	972
BsiEI	CGRYCG	1 cut(s)	4564
BsiHKAI	GWGCWC	5 cut(s)	214, 1245, 1327, 3173, 4570
BslFI	GGGAC	9 cut(s)	402, 1630, 2058, 2323, 4140, 4278, 4329, 4590, 4863
BslI	CCNNNNNNNGG	6 cut(s)	385, 923, 1295, 1845, 3793, 4580
BsmAI	GTCTC	9 cut(s)	454, 851, 1044, 1085, 2240, 2260, 3413, 4002, 4140
BsmBI	CGTCTC	1 cut(s)	3413
BsmFI	GGGAC	9 cut(s)	402, 1630, 2058, 2323, 4140, 4278, 4329, 4590, 4863
BsmI	GAATGC	1 cut(s)	2593
Bso31I	GGTCTC	1 cut(s)	454
Bsp13I	TCCGGA	2 cut(s)	2410, 3157
Bsp1407I	TGTACA	2 cut(s)	4620, 4806
Bsp1720I	GCTNAGC	1 cut(s)	213
Bsp19I	CCATGG	2 cut(s)	824, 1983
BspACI	CCGC	5 cut(s)	911, 1766, 3590, 4150, 4574
BspDI	ATCGAT	1 cut(s)	972
BspEI	TCCGGA	2 cut(s)	2410, 3157
BspFNI	CGCG	1 cut(s)	4363
BspHI	TCATGA	2 cut(s)	1245, 3411
BspLI	GGNNCC	6 cut(s)	1254, 3162, 3518, 3772, 3791, 3993
BspMAI	CTGCAG	4 cut(s)	162, 334, 2233, 4906
BspMI	ACCTGC	3 cut(s)	2169, 4561, 4603
BspOI	GCTAGC	1 cut(s)	2775
BspQI	GCTCTTC	1 cut(s)	3513
BspT107I	GGYRCC	3 cut(s)	1252, 3789, 3991
BspTI	CTTAAG	1 cut(s)	710
BspTNI	GGTCTC	1 cut(s)	454
BsrDI	GCAATG	4 cut(s)	831, 3318, 3731, 4961
BsrFI	RCCGGY	3 cut(s)	1284, 2951, 3786
BsrGI	TGTACA	2 cut(s)	4620, 4806
BssAI	RCCGGY	3 cut(s)	1284, 2951, 3786
BssECI	CCNNGG	8 cut(s)	824, 1546, 1983, 2870, 2987, 3072, 3118, 3254
BssNAI	GTATAC	1 cut(s)	4288
BssSI	CACGAG	2 cut(s)	1923, 2805
BssT1I	CCWWGG	6 cut(s)	824, 1983, 2870, 2987, 3072, 3254
Bst1107I	GTATAC	1 cut(s)	4288
Bst2BI	CACGAG	2 cut(s)	1923, 2805
Bst6I	CTCTTC	8 cut(s)	746, 1140, 1647, 1946, 3177, 3222, 3513, 4026
BstAFI	CTTAAG	1 cut(s)	710
BstAPI	GCANNNNNTGC	1 cut(s)	607
BstAUI	TGTACA	2 cut(s)	4620, 4806
BstBAI	YACGTR	1 cut(s)	985
BstC8I	GCNNGC	9 cut(s)	115, 644, 1416, 2773, 2845, 2912, 2916, 3986, 3990
BstDSI	CCRYGG	2 cut(s)	824, 1983
BstFNI	CGCG	1 cut(s)	4363
BstHHI	GCGC	1 cut(s)	4817
BstMAI	GTCTC	9 cut(s)	454, 851, 1044, 1085, 2240, 2260, 3413, 4002, 4140
BstMCI	CGRYCG	1 cut(s)	4564
BstMWI	GCNNNNNNNGC	6 cut(s)	607, 1766, 2477, 3320, 3728, 3985
BstNSI	RCATGY	5 cut(s)	117, 185, 1643, 3493, 3916
BstPAI	GACNNNNGTC	1 cut(s)	3873
BstSLI	GKGCMC	4 cut(s)	1257, 1612, 1948, 4018
BstUI	CGCG	1 cut(s)	4363
BstX2I	RGATCY	5 cut(s)	790, 2440, 3187, 3516, 3770
BstXI	CCANNNNNNTGG	1 cut(s)	1852
BstYI	RGATCY	5 cut(s)	790, 2440, 3187, 3516, 3770
BstZ17I	GTATAC	1 cut(s)	4288
Bsu15I	ATCGAT	1 cut(s)	972
BsuI	GTATCC	2 cut(s)	1339, 3604
BsuTUI	ATCGAT	1 cut(s)	972
BtgI	CCRYGG	2 cut(s)	824, 1983
BtgZI	GCGATG	2 cut(s)	3901, 4680
BtrI	CACGTC	2 cut(s)	4320, 4421
BtsI	GCAGTG	1 cut(s)	4911
BveI	ACCTGC	3 cut(s)	2169, 4561, 4603
Cac8I	GCNNGC	9 cut(s)	115, 644, 1416, 2773, 2845, 2912, 2916, 3986, 3990
CaiI	CAGNNNCTG	1 cut(s)	860
CciI	TCATGA	2 cut(s)	1245, 3411
CfoI	GCGC	1 cut(s)	4817
Cfr10I	RCCGGY	3 cut(s)	1284, 2951, 3786
Cfr13I	GGNCC	5 cut(s)	908, 1661, 2126, 3160, 3875
ClaI	ATCGAT	1 cut(s)	972
CseI	GACGC	4 cut(s)	1022, 2378, 2486, 4352
CsiI	ACCWGGT	5 cut(s)	1905, 4066, 4324, 4381, 4438
Csp6I	GTAC	8 cut(s)	259, 821, 943, 2794, 4621, 4807, 4939, 4957
CspCI	CAANNNNNGTGG	2 cut(s)	613, 648
CviQI	GTAC	8 cut(s)	259, 821, 943, 2794, 4621, 4807, 4939, 4957
DraI	TTTAAA	1 cut(s)	58
DrdI	GACNNNNNNGTC	1 cut(s)	2133
DseDI	GACNNNNNNGTC	1 cut(s)	2133
EaeI	YGGCCR	6 cut(s)	724, 961, 2552, 3795, 3837, 4264
Eam1104I	CTCTTC	8 cut(s)	746, 1140, 1647, 1946, 3177, 3222, 3513, 4026
EarI	CTCTTC	8 cut(s)	746, 1140, 1647, 1946, 3177, 3222, 3513, 4026
Ecl136II	GAGCTC	1 cut(s)	1243
Eco130I	CCWWGG	6 cut(s)	824, 1983, 2870, 2987, 3072, 3254
Eco147I	AGGCCT	1 cut(s)	685
Eco24I	GRGCYC	5 cut(s)	167, 1245, 1924, 4868, 4913
Eco31I	GGTCTC	1 cut(s)	454
Eco47I	GGWCC	4 cut(s)	1661, 2126, 3160, 3875
Eco53kI	GAGCTC	1 cut(s)	1243
Eco57I	CTGAAG	8 cut(s)	1491, 2502, 2702, 3078, 3474, 3491, 3636, 3912
EcoICRI	GAGCTC	1 cut(s)	1243
EcoRI	GAATTC	3 cut(s)	2070, 2152, 4215
EcoT14I	CCWWGG	6 cut(s)	824, 1983, 2870, 2987, 3072, 3254
EcoT22I	ATGCAT	2 cut(s)	115, 1265
EcoT38I	GRGCYC	5 cut(s)	167, 1245, 1924, 4868, 4913
ErhI	CCWWGG	6 cut(s)	824, 1983, 2870, 2987, 3072, 3254
Esp3I	CGTCTC	1 cut(s)	3413
FalI	AAGNNNNNCTT	2 cut(s)	3174, 3206
FaqI	GGGAC	9 cut(s)	402, 1630, 2058, 2323, 4140, 4278, 4329, 4590, 4863
FauNDI	CATATG	1 cut(s)	1646
FbaI	TGATCA	4 cut(s)	808, 1000, 3445, 3568
FblI	GTMKAC	1 cut(s)	4287
FriOI	GRGCYC	5 cut(s)	167, 1245, 1924, 4868, 4913
FspBI	CTAG	7 cut(s)	1077, 1224, 2772, 2871, 2978, 4140, 4734
GlaI	GCGC	1 cut(s)	4816
GsaI	CCCAGC	3 cut(s)	2470, 3983, 4884
GsuI	CTGGAG	6 cut(s)	1259, 1481, 1874, 4026, 4224, 4746
HgaI	GACGC	4 cut(s)	1022, 2378, 2486, 4352
HhaI	GCGC	1 cut(s)	4817
Hin6I	GCGC	1 cut(s)	4815
HinP1I	GCGC	1 cut(s)	4815
HincII	GTYRAC	3 cut(s)	179, 2566, 3559
HindII	GTYRAC	3 cut(s)	179, 2566, 3559
HindIII	AAGCTT	2 cut(s)	63, 2798
HpaI	GTTAAC	2 cut(s)	2566, 3559
Hpy166II	GTNNAC	9 cut(s)	179, 597, 1903, 2085, 2566, 3559, 3910, 4288, 4623
Hpy8I	GTNNAC	9 cut(s)	179, 597, 1903, 2085, 2566, 3559, 3910, 4288, 4623
Hpy99I	CGWCG	1 cut(s)	3729
HpyCH4IV	ACGT	6 cut(s)	984, 1197, 1365, 4206, 4319, 4420
HpyF10VI	GCNNNNNNNGC	6 cut(s)	607, 1766, 2477, 3320, 3728, 3985
HpySE526I	ACGT	6 cut(s)	984, 1197, 1365, 4206, 4319, 4420
HspAI	GCGC	1 cut(s)	4815
Kpn2I	TCCGGA	2 cut(s)	2410, 3157
Ksp22I	TGATCA	4 cut(s)	808, 1000, 3445, 3568
KspAI	GTTAAC	2 cut(s)	2566, 3559
LguI	GCTCTTC	1 cut(s)	3513
LmnI	GCTCC	9 cut(s)	828, 892, 1012, 1030, 1240, 1423, 3430, 3592, 4742
MabI	ACCWGGT	5 cut(s)	1905, 4066, 4324, 4381, 4438
MaeI	CTAG	7 cut(s)	1077, 1224, 2772, 2871, 2978, 4140, 4734
MaeII	ACGT	6 cut(s)	984, 1197, 1365, 4206, 4319, 4420
MfeI	CAATTG	2 cut(s)	1755, 3996
MflI	RGATCY	5 cut(s)	790, 2440, 3187, 3516, 3770
MlsI	TGGCCA	4 cut(s)	963, 3797, 3839, 4266
MluNI	TGGCCA	4 cut(s)	963, 3797, 3839, 4266
MlyI	GAGTC	4 cut(s)	765, 859, 2923, 4162
MmeI	TCCRAC	6 cut(s)	4161, 4361, 4418, 4475, 4547, 4871
Mox20I	TGGCCA	4 cut(s)	963, 3797, 3839, 4266
Mph1103I	ATGCAT	2 cut(s)	115, 1265
MroI	TCCGGA	2 cut(s)	2410, 3157
MroXI	GAANNNNTTC	3 cut(s)	294, 339, 2623
MscI	TGGCCA	4 cut(s)	963, 3797, 3839, 4266
MslI	CAYNNNNRTG	8 cut(s)	836, 1250, 1382, 2818, 2924, 3272, 3651, 3687
Msp20I	TGGCCA	4 cut(s)	963, 3797, 3839, 4266
MspA1I	CMGCKG	3 cut(s)	455, 575, 1852
MspCI	CTTAAG	1 cut(s)	710
MssI	GTTTAAAC	1 cut(s)	58
MunI	CAATTG	2 cut(s)	1755, 3996
Mva1269I	GAATGC	1 cut(s)	2593
MvnI	CGCG	1 cut(s)	4363
MwoI	GCNNNNNNNGC	6 cut(s)	607, 1766, 2477, 3320, 3728, 3985
NcoI	CCATGG	2 cut(s)	824, 1983
NdeI	CATATG	1 cut(s)	1646
NheI	GCTAGC	1 cut(s)	2771
NlaIV	GGNNCC	6 cut(s)	1254, 3162, 3518, 3772, 3791, 3993
NmuCI	GTSAC	4 cut(s)	862, 1987, 2533, 4320
NsiI	ATGCAT	2 cut(s)	115, 1265
NspI	RCATGY	5 cut(s)	117, 185, 1643, 3493, 3916
PaeI	GCATGC	1 cut(s)	117
PagI	TCATGA	2 cut(s)	1245, 3411
PaqCI	CACCTGC	1 cut(s)	4561
PceI	AGGCCT	1 cut(s)	685
PciI	ACATGT	2 cut(s)	181, 1639
PciSI	GCTCTTC	1 cut(s)	3513
PctI	GAATGC	1 cut(s)	2593
PdmI	GAANNNNTTC	3 cut(s)	294, 339, 2623
PflFI	GACNNNGTC	1 cut(s)	1055
PflMI	CCANNNNNTGG	1 cut(s)	385
PleI	GAGTC	4 cut(s)	764, 859, 2923, 4161
PmeI	GTTTAAAC	1 cut(s)	58
PpsI	GAGTC	4 cut(s)	764, 859, 2923, 4161
Ppu21I	YACGTR	1 cut(s)	985
PscI	ACATGT	2 cut(s)	181, 1639
PshAI	GACNNNNGTC	1 cut(s)	3873
PshBI	ATTAAT	1 cut(s)	3333
PsiI	TTATAA	2 cut(s)	1023, 1475
Psp124BI	GAGCTC	1 cut(s)	1245
PspFI	CCCAGC	3 cut(s)	2466, 3979, 4880
PspN4I	GGNNCC	6 cut(s)	1254, 3162, 3518, 3772, 3791, 3993
PspPI	GGNCC	5 cut(s)	908, 1661, 2126, 3160, 3875
PstI	CTGCAG	4 cut(s)	162, 334, 2233, 4906
PstNI	CAGNNNCTG	1 cut(s)	860
PsuI	RGATCY	5 cut(s)	790, 2440, 3187, 3516, 3770
PsyI	GACNNNGTC	1 cut(s)	1055
PvuII	CAGCTG	3 cut(s)	455, 575, 1852
RsaI	GTAC	8 cut(s)	260, 822, 944, 2795, 4622, 4808, 4940, 4958
RsaNI	GTAC	8 cut(s)	259, 821, 943, 2794, 4621, 4807, 4939, 4957
RseI	CAYNNNNRTG	8 cut(s)	836, 1250, 1382, 2818, 2924, 3272, 3651, 3687
SacI	GAGCTC	1 cut(s)	1245
SapI	GCTCTTC	1 cut(s)	3513
Sau96I	GGNCC	5 cut(s)	908, 1661, 2126, 3160, 3875
ScaI	AGTACT	1 cut(s)	4958
SchI	GAGTC	4 cut(s)	765, 859, 2923, 4162
SexAI	ACCWGGT	5 cut(s)	1905, 4066, 4324, 4381, 4438
SinI	GGWCC	4 cut(s)	1661, 2126, 3160, 3875
SmiMI	CAYNNNNRTG	8 cut(s)	836, 1250, 1382, 2818, 2924, 3272, 3651, 3687
SmlI	CTYRAG	4 cut(s)	710, 1976, 3132, 4121
SmoI	CTYRAG	4 cut(s)	710, 1976, 3132, 4121
SphI	GCATGC	1 cut(s)	117
SseBI	AGGCCT	1 cut(s)	685
SsiI	CCGC	5 cut(s)	911, 1766, 3590, 4150, 4574
SspI	AATATT	1 cut(s)	1428
SspMI	CTAG	7 cut(s)	1077, 1224, 2772, 2871, 2978, 4140, 4734
SstI	GAGCTC	1 cut(s)	1245
StuI	AGGCCT	1 cut(s)	685
StyI	CCWWGG	6 cut(s)	824, 1983, 2870, 2987, 3072, 3254
TaiI	ACGT	6 cut(s)	987, 1200, 1368, 4209, 4322, 4423
TaqII	GACCGA	1 cut(s)	4578
TatI	WGTACW	7 cut(s)	258, 942, 2793, 4620, 4806, 4938, 4956
TauI	GCSGC	2 cut(s)	913, 1769
TseFI	GTSAC	4 cut(s)	862, 1987, 2533, 4320
Tsp45I	GTSAC	4 cut(s)	862, 1987, 2533, 4320
TspGWI	ACGGA	3 cut(s)	787, 2064, 3395
Tth111I	GACNNNGTC	1 cut(s)	1055
Van91I	CCANNNNNTGG	1 cut(s)	385
Vha464I	CTTAAG	1 cut(s)	710
VpaK11BI	GGWCC	4 cut(s)	1661, 2126, 3160, 3875
VspI	ATTAAT	1 cut(s)	3333
XapI	RAATTY	8 cut(s)	35, 544, 1679, 2070, 2152, 2320, 3194, 4215
XceI	RCATGY	5 cut(s)	117, 185, 1643, 3493, 3916
XcmI	CCANNNNNNNNNTGG	2 cut(s)	229, 1443
XmaJI	CCTAGG	1 cut(s)	2870
XmiI	GTMKAC	1 cut(s)	4287
XmnI	GAANNNNTTC	3 cut(s)	294, 339, 2623
XspI	CTAG	7 cut(s)	1077, 1224, 2772, 2871, 2978, 4140, 4734
ZrmI	AGTACT	1 cut(s)	4958
Zsp2I	ATGCAT	2 cut(s)	115, 1265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.