Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002476

Physical Location & Seq

Genomic Coordinates Reverse (-)

15112098 .. 15114551

Gene Structure 2454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g21110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2091 bp

ATGCCGTACTCAACATTTCGATTGAATTTGTCTGTGACGTCGCCGTATAATGCTGACTTTGACGGGGATGAAATGAACATGCATGTGCCCCAGTCCTTTGAAACCAGGGCTGAAGTATTGGAGCTCATGATGGTGCCAAAATGCATCGTCTCACCTCAGTCAAATCGACCTGTCATGGGAATTGTTCAGGACACACTTTTAGGTTGTCGTAAGATCACTAAGAGGGACACCTTTATAGAGAAGGATGTTTTCATGAATATCTTGATGTGGTGGGAGGATTTTGATGGAAAAGTTCCTGCTCCTGCAATTTTGAAGCCCCGGCCACTTTGGACTGGAAAACAGGTGTTCAATCTTATAATACCAAAACAAATAAATCTCCAAAGAACTTCTGCATGGCACTCGGAATCAGAGAGTGGGAACATAACTCCAGGGGATACTCTTGTTAGAATAGAAAAGGGTGAATTGCTTTCTGGAACTCTCTGCAAGAAGGCCCTTGGGACTTCTACAGGAAGTCTTATTCATGTTATATGGGAAGAGGTTGGTCCAGATGCAGCCCGCAAGTTTCTGGGTCATACCCAATGGCTTGTGAATTACTGGCTGCTGCAGAATGCTTTTAGCATTGGAATTGGAGATACGATTGCTGATGCAGCCACAATGGAGAAAATCAATGAAACAATTTCCAAGGCGAAAAATGAGGTGAAAGATCTTATAAGTAAAGCCCAATCTAAGCAGCTGGAGGCTGAACCTGGACGAACCATGATGGATTCGTTTGAAAACAAAGTGAACCAGGTGTTGAATAGGGCTCGTGATGATGCTGGAAGTAGTGCTCAAAAGAGTTTAGATGAGAGCAACAATCTTAAGGCCATGGTTACAGCAGGGTCCAAAGGGAGTTTTATCAACATATCACAGATGACTGCTTGTGTGGGACAGCAGAACGTTGAGGGTAAGCGAATCCCGTACGGGTTCATAGACCGGACGTTGCCCCACTTTACTAAAGATGATTATGGACCAGAAAGTCGTGGATTTGTAGAGAATTCATACCTGCGTGGACTAACTCCACAGGAGTTCTTTTTTCATGCTATGGGTGGTAGGGAAGGTCTTATAGATACTGCTGTTAAGACATCTGAGACTGGGTACATCCAAAGGAGACTGGTGAAGGCTATGGAGGATATTATGGTGAAATATGATGGCACAGTACGTAATTCTTTGGGTGATGTCATTCAGTTTCTATATGGGGAAGATGGGATGGATGCTGTTTGGATAGAATCACAAAAGCTGGATTCTTTGAAAATGAAGAAAACAGAATTTGATAAGACTTTTACTTATGAGTTGGATGATGAATATTGGAATCCCGACTACATGTTGCACGAACATGTTGAGGATCTCAAAACGATTAGAGAGTTTCGTAACGTGTTTGATGCAGAAGTTCAGAAACTTGAAACAGATAGATTACAACTTGGAACAGAGATTGCAGTCACAGGTGATAATTCTTGGCCACTGCCTGTTAACTTGAAGAGGCTTATTTGGAATGCACAAAAAACCTTTAAGATTGACTTCCGAAGGACTTCTGATATGCACCCGATGGAAATTGTGGAAGCTATTGATAAGCTGCAGGAGAGACTGAAAGTTGTTCCTGGTGATGACTTGTTGAGTGTCGAAGCGCAGAAGAATGCAACATTGTTTTTCAACATTTTACTTCGCAGCACTTTCGCAAGCAAACGGGTGTTGGATGAGTACAGGCTTACTCGTGAAGCATTTGAGTGGGTTATTGGGGAGATAGAATCACGCTTCCTGCAATCGCTTGTAGCACCTGGGGAAATGATTGGCTGCGTTGCTGCACAGTCTATTGGAGAACCTGCCACTCAGATGACACTGAATACTTTCCACTACGCAGGTGTGAGTGCAAAGAATGTTACCCTAGGTGTCCCCAGGTTGAGGGAAATTATTAATGTAGCCAAGAGAATCAAAACGCCATCCCTGTCTGTCTACTTAAAGCCTGAAGCTAATAAAACGAAGGAGAGGGCGAAGAATGTGCAGTGTGCTTTGGAATACACCACTTTGCGAAGTGTAACTCAAGCTACAGAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0005773 GO:0005911 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030054 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0055029 GO:0055044 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_R

Protein Analysis

697

Amino Acids

78.73

Weight (kDa)

5.8

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35800 AT4G35800
fragaria_vesca	FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070
malus_domestica	MD02G1123200.v1.1 MD02G1123400.v1.1 MD02G1125500.v1.1 MD02G1125800.v1.1 MD15G1237200.v1.1
prunus_persica	Prupe.7G175200_v2.0.a1
pyrus_communis	pycom02g09610 pycom15g21110
rosa_chinensis	RchiOBHm_Chr2g0098321 RchiOBHm_Chr2g0098331
rosa_laevigata	RLG00000016790 RLG00000016791
rosa_multiflora	Rmu_co8358581.1_g000001 Rmu_sc0003434.1_g000008 Rmu_sc0023772.1_g000002 Rmu_sc0042863.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144060 Rroxscaffold_2G00144070
rosa_rugosa	Rorug02G0072000 Rorug02G0072000 Rorug02G0072100
rosa_samantha	Rh2AG119100 Rh2AG119200 Rh2BG122300 Rh2BG122400 Rh2CG123900 Rh2CG124000 Rh2DG123900 Rh2DG124000
rosa_wichuraiana	Rw2G009330 Rw2G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	356, 710
AarI	CACCTGC	1 cut(s)	1883
AasI	GACNNNNNNGTC	1 cut(s)	1014
AatII	GACGTC	1 cut(s)	41
Acc36I	ACCTGC	3 cut(s)	1050, 1864, 1883
AccB1I	GGYRCC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	1986
AciI	CCGC	1 cut(s)	556
AclI	AACGTT	1 cut(s)	936
AclWI	GGATC	1 cut(s)	1389
AcoI	YGGCCR	2 cut(s)	320, 1493
AcsI	RAATTY	3 cut(s)	25, 1033, 1304
AcuI	CTGAAG	2 cut(s)	132, 2019
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	5 cut(s)	8, 959, 1136, 1197, 1736
AfiI	CCNNNNNNNGG	2 cut(s)	176, 1935
AflII	CTTAAG	1 cut(s)	857
AflIII	ACRYGT	3 cut(s)	1359, 1372, 1410
AjnI	CCWGG	7 cut(s)	104, 427, 745, 786, 1633, 1810, 1928
AluBI	AGCT	7 cut(s)	124, 733, 1276, 1598, 1609, 2003, 2078
AluI	AGCT	7 cut(s)	124, 733, 1276, 1598, 1609, 2003, 2078
Alw21I	GWGCWC	2 cut(s)	126, 829
Alw26I	GTCTC	4 cut(s)	154, 1121, 1141, 1612
AlwI	GGATC	1 cut(s)	1389
AoxI	GGCC	4 cut(s)	320, 489, 861, 1493
ApeKI	GCWGC	9 cut(s)	551, 598, 601, 647, 730, 1609, 1701, 1827, 1835
ApoI	RAATTY	3 cut(s)	25, 1033, 1304
AseI	ATTAAT	1 cut(s)	1947
Asp700I	GAANNNNTTC	2 cut(s)	1564, 1880
AspA2I	CCTAGG	1 cut(s)	1918
AspLEI	GCGC	1 cut(s)	1663
AspS9I	GGNCC	4 cut(s)	490, 542, 879, 1007
AsuC2I	CCSGG	1 cut(s)	319
AsuHPI	GGTGA	8 cut(s)	144, 470, 709, 1165, 1189, 1223, 1493, 1649
AvaII	GGWCC	3 cut(s)	542, 879, 1007
AvrII	CCTAGG	1 cut(s)	1918
BaeGI	GKGCMC	1 cut(s)	90
BaeI	ACNNNNGTAYC	4 cut(s)	426, 459, 1098, 1131
BalI	TGGCCA	1 cut(s)	1495
BanI	GGYRCC	1 cut(s)	133
BanII	GRGCYC	2 cut(s)	126, 805
BauI	CACGAG	2 cut(s)	804, 1746
Bbv12I	GWGCWC	2 cut(s)	126, 829
BbvI	GCAGC	9 cut(s)	563, 585, 588, 659, 742, 1596, 1713, 1814, 1822
BccI	CCATC	8 cut(s)	124, 278, 754, 1181, 1235, 1240, 1576, 1981
BceAI	ACGGC	1 cut(s)	28
BcgI	CGANNNNNNTGC	6 cut(s)	381, 415, 1690, 1724, 2014, 2048
BciT130I	CCWGG	7 cut(s)	106, 429, 747, 788, 1635, 1812, 1930
BciVI	GTATCC	1 cut(s)	427
BcnI	CCSGG	1 cut(s)	319
BcoDI	GTCTC	4 cut(s)	154, 1121, 1141, 1612
BfaI	CTAG	1 cut(s)	1919
BfmI	CTRYAG	4 cut(s)	504, 602, 1610, 2079
BfrI	CTTAAG	1 cut(s)	857
BfuAI	ACCTGC	3 cut(s)	1050, 1864, 1883
BfuI	GTATCC	1 cut(s)	427
BglII	AGATCT	1 cut(s)	703
BisI	GCNGC	9 cut(s)	552, 599, 602, 648, 731, 1610, 1702, 1828, 1836
BlnI	CCTAGG	1 cut(s)	1918
BlsI	GCNGC	9 cut(s)	553, 600, 603, 649, 732, 1611, 1703, 1829, 1837
Bme1390I	CCNGG	8 cut(s)	106, 319, 429, 747, 788, 1635, 1812, 1930
Bme18I	GGWCC	3 cut(s)	542, 879, 1007
BmgT120I	GGNCC	4 cut(s)	490, 542, 879, 1007
BmiI	GGNNCC	2 cut(s)	135, 880
BmrFI	CCNGG	8 cut(s)	106, 319, 429, 747, 788, 1635, 1812, 1930
BmrI	ACTGGG	2 cut(s)	85, 1140
BmsI	GCATC	6 cut(s)	153, 538, 634, 802, 1240, 1408
BmuI	ACTGGG	2 cut(s)	85, 1140
BpmI	CTGGAG	2 cut(s)	411, 755
BpuEI	CTTGAG	1 cut(s)	2058
BpuMI	CCSGG	1 cut(s)	319
BsaAI	YACGTR	1 cut(s)	1199
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	9 cut(s)	105, 317, 428, 493, 681, 864, 1811, 1918, 1928
BsaWI	WCCGGW	1 cut(s)	972
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 1935
Bse1I	ACTGG	5 cut(s)	91, 337, 599, 1135, 1155
BseBI	CCWGG	7 cut(s)	106, 429, 747, 788, 1635, 1812, 1930
BseDI	CCNNGG	9 cut(s)	105, 317, 428, 493, 681, 864, 1811, 1918, 1928
BseGI	GGATG	8 cut(s)	73, 250, 1137, 1251, 1255, 1339, 1735, 1973
BseLI	CCNNNNNNNGG	2 cut(s)	176, 1935
BseMII	CTCAG	3 cut(s)	170, 1116, 1877
BseNI	ACTGG	5 cut(s)	91, 337, 599, 1135, 1155
BseSI	GKGCMC	1 cut(s)	90
BseXI	GCAGC	9 cut(s)	563, 585, 588, 659, 742, 1596, 1713, 1814, 1822
BsgI	GTGCAG	2 cut(s)	1821, 2054
BshFI	GGCC	4 cut(s)	322, 491, 863, 1495
BshNI	GGYRCC	1 cut(s)	133
BsiHKAI	GWGCWC	2 cut(s)	126, 829
BsiSI	CCGG	2 cut(s)	319, 973
BsiWI	CGTACG	1 cut(s)	957
BslFI	GGGAC	4 cut(s)	239, 511, 939, 1910
BslI	CCNNNNNNNGG	2 cut(s)	176, 1935
BsmAI	GTCTC	4 cut(s)	154, 1121, 1141, 1612
BsmBI	CGTCTC	1 cut(s)	154
BsmFI	GGGAC	4 cut(s)	239, 511, 939, 1910
BsmI	GAATGC	3 cut(s)	613, 1534, 1675
BsnI	GGCC	4 cut(s)	322, 491, 863, 1495
Bsp1286I	GDGCHC	4 cut(s)	90, 126, 805, 829
Bsp143I	GATC	3 cut(s)	213, 703, 1381
Bsp19I	CCATGG	1 cut(s)	864
BspACI	CCGC	1 cut(s)	556
BspANI	GGCC	4 cut(s)	322, 491, 863, 1495
BspCNI	CTCAG	3 cut(s)	169, 1117, 1876
BspHI	TCATGA	2 cut(s)	126, 252
BspLI	GGNNCC	2 cut(s)	135, 880
BspMAI	CTGCAG	2 cut(s)	606, 1614
BspMI	ACCTGC	3 cut(s)	1050, 1864, 1883
BspPI	GGATC	1 cut(s)	1389
BspT107I	GGYRCC	1 cut(s)	133
BspTI	CTTAAG	1 cut(s)	857
BsrI	ACTGG	5 cut(s)	91, 337, 599, 1135, 1155
BssECI	CCNNGG	9 cut(s)	105, 317, 428, 493, 681, 864, 1811, 1918, 1928
BssMI	GATC	3 cut(s)	213, 703, 1381
BssNI	GRCGYC	1 cut(s)	38
BssSI	CACGAG	2 cut(s)	804, 1746
BssT1I	CCWWGG	4 cut(s)	493, 681, 864, 1918
Bst2BI	CACGAG	2 cut(s)	804, 1746
Bst2UI	CCWGG	7 cut(s)	106, 429, 747, 788, 1635, 1812, 1930
Bst4CI	ACNGT	2 cut(s)	1195, 1842
Bst6I	CTCTTC	2 cut(s)	528, 1508
BstACI	GRCGYC	1 cut(s)	38
BstAFI	CTTAAG	1 cut(s)	857
BstBAI	YACGTR	1 cut(s)	1199
BstC8I	GCNNGC	2 cut(s)	556, 1714
BstDEI	CTNAG	5 cut(s)	156, 219, 726, 1125, 1863
BstDSI	CCRYGG	1 cut(s)	864
BstF5I	GGATG	8 cut(s)	73, 250, 1137, 1251, 1255, 1339, 1735, 1973
BstHHI	GCGC	1 cut(s)	1663
BstKTI	GATC	3 cut(s)	216, 706, 1384
BstMAI	GTCTC	4 cut(s)	154, 1121, 1141, 1612
BstMBI	GATC	3 cut(s)	213, 703, 1381
BstMWI	GCNNNNNNNGC	1 cut(s)	647
BstNI	CCWGG	7 cut(s)	106, 429, 747, 788, 1635, 1812, 1930
BstNSI	RCATGY	4 cut(s)	82, 86, 1363, 1376
BstSCI	CCNGG	8 cut(s)	104, 317, 427, 745, 786, 1633, 1810, 1928
BstSFI	CTRYAG	4 cut(s)	504, 602, 1610, 2079
BstSLI	GKGCMC	1 cut(s)	90
BstSNI	TACGTA	1 cut(s)	1199
BstV1I	GCAGC	9 cut(s)	563, 585, 588, 659, 742, 1596, 1713, 1814, 1822
BstX2I	RGATCY	2 cut(s)	703, 1381
BstYI	RGATCY	2 cut(s)	703, 1381
BsuI	GTATCC	1 cut(s)	427
BsuRI	GGCC	4 cut(s)	322, 491, 863, 1495
BtgI	CCRYGG	1 cut(s)	864
BtsCI	GGATG	8 cut(s)	73, 250, 1137, 1251, 1255, 1339, 1735, 1973
BtsI	GCAGTG	2 cut(s)	1496, 2042
BtsIMutI	CAGTG	3 cut(s)	1496, 1871, 2042
BveI	ACCTGC	3 cut(s)	1050, 1864, 1883
Cac8I	GCNNGC	2 cut(s)	556, 1714
CciI	TCATGA	2 cut(s)	126, 252
CfoI	GCGC	1 cut(s)	1663
Cfr13I	GGNCC	4 cut(s)	490, 542, 879, 1007
CsiI	ACCWGGT	1 cut(s)	786
Csp6I	GTAC	5 cut(s)	7, 958, 1135, 1196, 1735
CviQI	GTAC	5 cut(s)	7, 958, 1135, 1196, 1735
DdeI	CTNAG	5 cut(s)	156, 219, 726, 1125, 1863
DpnI	GATC	3 cut(s)	215, 705, 1383
DpnII	GATC	3 cut(s)	213, 703, 1381
DrdI	GACNNNNNNGTC	1 cut(s)	1014
DseDI	GACNNNNNNGTC	1 cut(s)	1014
EaeI	YGGCCR	2 cut(s)	320, 1493
Eam1104I	CTCTTC	2 cut(s)	528, 1508
EarI	CTCTTC	2 cut(s)	528, 1508
Ecl136II	GAGCTC	1 cut(s)	124
Eco105I	TACGTA	1 cut(s)	1199
Eco130I	CCWWGG	4 cut(s)	493, 681, 864, 1918
Eco24I	GRGCYC	2 cut(s)	126, 805
Eco47I	GGWCC	3 cut(s)	542, 879, 1007
Eco53kI	GAGCTC	1 cut(s)	124
Eco57I	CTGAAG	2 cut(s)	132, 2019
EcoICRI	GAGCTC	1 cut(s)	124
EcoO109I	RGGNCCY	1 cut(s)	490
EcoRI	GAATTC	1 cut(s)	1033
EcoRII	CCWGG	7 cut(s)	104, 427, 745, 786, 1633, 1810, 1928
EcoT14I	CCWWGG	4 cut(s)	493, 681, 864, 1918
EcoT22I	ATGCAT	2 cut(s)	84, 146
EcoT38I	GRGCYC	2 cut(s)	126, 805
ErhI	CCWWGG	4 cut(s)	493, 681, 864, 1918
Esp3I	CGTCTC	1 cut(s)	154
FalI	AAGNNNNNCTT	2 cut(s)	1538, 1570
FaqI	GGGAC	4 cut(s)	239, 511, 939, 1910
FauI	CCCGC	1 cut(s)	563
FblI	GTMKAC	1 cut(s)	1986
Fnu4HI	GCNGC	9 cut(s)	552, 599, 602, 648, 731, 1610, 1702, 1828, 1836
FokI	GGATG	8 cut(s)	80, 257, 1124, 1258, 1262, 1346, 1742, 1960
FriOI	GRGCYC	2 cut(s)	126, 805
Fsp4HI	GCNGC	9 cut(s)	552, 599, 602, 648, 731, 1610, 1702, 1828, 1836
FspBI	CTAG	1 cut(s)	1919
GlaI	GCGC	1 cut(s)	1662
GluI	GCNGC	9 cut(s)	552, 599, 602, 648, 731, 1610, 1702, 1828, 1836
GsuI	CTGGAG	2 cut(s)	411, 755
HaeIII	GGCC	4 cut(s)	322, 491, 863, 1495
HapII	CCGG	2 cut(s)	319, 973
HhaI	GCGC	1 cut(s)	1663
Hin1I	GRCGYC	1 cut(s)	38
Hin6I	GCGC	1 cut(s)	1661
HinP1I	GCGC	1 cut(s)	1661
HincII	GTYRAC	1 cut(s)	1507
HindII	GTYRAC	1 cut(s)	1507
HinfI	GANTC	8 cut(s)	404, 764, 951, 1265, 1280, 1348, 1781, 1962
HpaI	GTTAAC	1 cut(s)	1507
HpaII	CCGG	2 cut(s)	319, 973
HphI	GGTGA	8 cut(s)	144, 470, 709, 1165, 1189, 1223, 1493, 1649
Hpy166II	GTNNAC	4 cut(s)	784, 1049, 1507, 1987
Hpy188I	TCNGA	7 cut(s)	403, 409, 1126, 1431, 1559, 1570, 1866
Hpy188III	TCNNGA	9 cut(s)	127, 188, 253, 262, 471, 545, 806, 1352, 1748
Hpy8I	GTNNAC	4 cut(s)	784, 1049, 1507, 1987
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	6 cut(s)	235, 481, 1088, 1150, 1554, 2008
HpyCH4III	ACNGT	2 cut(s)	1195, 1842
HpyCH4IV	ACGT	5 cut(s)	38, 936, 977, 1198, 1410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	647
HpyF3I	CTNAG	5 cut(s)	156, 219, 726, 1125, 1863
HpySE526I	ACGT	5 cut(s)	38, 936, 977, 1198, 1410
Hsp92I	GRCGYC	1 cut(s)	38
HspAI	GCGC	1 cut(s)	1661
KspAI	GTTAAC	1 cut(s)	1507
Kzo9I	GATC	3 cut(s)	213, 703, 1381
LmnI	GCTCC	2 cut(s)	121, 304
Lsp1109I	GCAGC	9 cut(s)	563, 585, 588, 659, 742, 1596, 1713, 1814, 1822
LweI	GCATC	6 cut(s)	153, 538, 634, 802, 1240, 1408
MabI	ACCWGGT	1 cut(s)	786
MaeI	CTAG	1 cut(s)	1919
MaeII	ACGT	5 cut(s)	38, 936, 977, 1198, 1410
MaeIII	GTNAC	6 cut(s)	34, 868, 1406, 1474, 1912, 2068
MalI	GATC	3 cut(s)	215, 705, 1383
MboI	GATC	3 cut(s)	213, 703, 1381
MboII	GAAGA	6 cut(s)	545, 1250, 1306, 1525, 1678, 2038
MflI	RGATCY	2 cut(s)	703, 1381
MhlI	GDGCHC	4 cut(s)	90, 126, 805, 829
MlsI	TGGCCA	1 cut(s)	1495
MluNI	TGGCCA	1 cut(s)	1495
MmeI	TCCRAC	2 cut(s)	1311, 1707
Mox20I	TGGCCA	1 cut(s)	1495
Mph1103I	ATGCAT	2 cut(s)	84, 146
MroXI	GAANNNNTTC	2 cut(s)	1564, 1880
MscI	TGGCCA	1 cut(s)	1495
MseI	TTAA	6 cut(s)	858, 1116, 1506, 1545, 1947, 1991
MslI	CAYNNNNRTG	5 cut(s)	83, 131, 1371, 1759, 1865
Msp20I	TGGCCA	1 cut(s)	1495
MspA1I	CMGCKG	1 cut(s)	733
MspCI	CTTAAG	1 cut(s)	857
MspI	CCGG	2 cut(s)	319, 973
MspR9I	CCNGG	8 cut(s)	106, 319, 429, 747, 788, 1635, 1812, 1930
Mva1269I	GAATGC	3 cut(s)	613, 1534, 1675
MvaI	CCWGG	7 cut(s)	106, 429, 747, 788, 1635, 1812, 1930
MwoI	GCNNNNNNNGC	1 cut(s)	647
NciI	CCSGG	1 cut(s)	319
NcoI	CCATGG	1 cut(s)	864
NdeII	GATC	3 cut(s)	213, 703, 1381
NlaIV	GGNNCC	2 cut(s)	135, 880
NmuCI	GTSAC	2 cut(s)	34, 1474
NsiI	ATGCAT	2 cut(s)	84, 146
NspI	RCATGY	4 cut(s)	82, 86, 1363, 1376
PagI	TCATGA	2 cut(s)	126, 252
PaqCI	CACCTGC	1 cut(s)	1883
PciI	ACATGT	2 cut(s)	1359, 1372
PctI	GAATGC	3 cut(s)	613, 1534, 1675
PdmI	GAANNNNTTC	2 cut(s)	1564, 1880
PfeI	GAWTC	8 cut(s)	404, 764, 951, 1265, 1280, 1348, 1781, 1962
Pfl23II	CGTACG	1 cut(s)	957
PkrI	GCNGC	9 cut(s)	553, 600, 603, 649, 732, 1611, 1703, 1829, 1837
Ppu21I	YACGTR	1 cut(s)	1199
PscI	ACATGT	2 cut(s)	1359, 1372
PshBI	ATTAAT	1 cut(s)	1947
PsiI	TTATAA	2 cut(s)	356, 710
Psp124BI	GAGCTC	1 cut(s)	126
Psp1406I	AACGTT	1 cut(s)	936
Psp6I	CCWGG	7 cut(s)	104, 427, 745, 786, 1633, 1810, 1928
PspGI	CCWGG	7 cut(s)	104, 427, 745, 786, 1633, 1810, 1928
PspLI	CGTACG	1 cut(s)	957
PspN4I	GGNNCC	2 cut(s)	135, 880
PspPI	GGNCC	4 cut(s)	490, 542, 879, 1007
PstI	CTGCAG	2 cut(s)	606, 1614
PsuI	RGATCY	2 cut(s)	703, 1381
PvuII	CAGCTG	1 cut(s)	733
RsaI	GTAC	5 cut(s)	8, 959, 1136, 1197, 1736
RsaNI	GTAC	5 cut(s)	7, 958, 1135, 1196, 1735
RseI	CAYNNNNRTG	5 cut(s)	83, 131, 1371, 1759, 1865
SacI	GAGCTC	1 cut(s)	126
SaqAI	TTAA	6 cut(s)	858, 1116, 1506, 1545, 1947, 1991
SatI	GCNGC	9 cut(s)	552, 599, 602, 648, 731, 1610, 1702, 1828, 1836
Sau3AI	GATC	3 cut(s)	213, 703, 1381
Sau96I	GGNCC	4 cut(s)	490, 542, 879, 1007
ScrFI	CCNGG	8 cut(s)	106, 319, 429, 747, 788, 1635, 1812, 1930
SduI	GDGCHC	4 cut(s)	90, 126, 805, 829
SexAI	ACCWGGT	1 cut(s)	786
SfaNI	GCATC	6 cut(s)	153, 538, 634, 802, 1240, 1408
SfcI	CTRYAG	4 cut(s)	504, 602, 1610, 2079
SinI	GGWCC	3 cut(s)	542, 879, 1007
SmiMI	CAYNNNNRTG	5 cut(s)	83, 131, 1371, 1759, 1865
SmlI	CTYRAG	2 cut(s)	857, 2073
SmoI	CTYRAG	2 cut(s)	857, 2073
SnaBI	TACGTA	1 cut(s)	1199
SsiI	CCGC	1 cut(s)	556
SspI	AATATT	1 cut(s)	1343
SspMI	CTAG	1 cut(s)	1919
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	8 cut(s)	104, 317, 427, 745, 786, 1633, 1810, 1928
StyI	CCWWGG	4 cut(s)	493, 681, 864, 1918
TaaI	ACNGT	2 cut(s)	1195, 1842
TaiI	ACGT	5 cut(s)	41, 939, 980, 1201, 1413
TaqI	TCGA	3 cut(s)	19, 166, 1656
TatI	WGTACW	1 cut(s)	1734
TfiI	GAWTC	8 cut(s)	404, 764, 951, 1265, 1280, 1348, 1781, 1962
Tru1I	TTAA	6 cut(s)	858, 1116, 1506, 1545, 1947, 1991
Tru9I	TTAA	6 cut(s)	858, 1116, 1506, 1545, 1947, 1991
TscAI	CASTG	3 cut(s)	1503, 1878, 2042
TseFI	GTSAC	2 cut(s)	34, 1474
TseI	GCWGC	9 cut(s)	551, 598, 601, 647, 730, 1609, 1701, 1827, 1835
Tsp45I	GTSAC	2 cut(s)	34, 1474
TspRI	CASTG	3 cut(s)	1503, 1878, 2042
Vha464I	CTTAAG	1 cut(s)	857
VpaK11BI	GGWCC	3 cut(s)	542, 879, 1007
VspI	ATTAAT	1 cut(s)	1947
XapI	RAATTY	3 cut(s)	25, 1033, 1304
XceI	RCATGY	4 cut(s)	82, 86, 1363, 1376
XmaJI	CCTAGG	1 cut(s)	1918
XmiI	GTMKAC	1 cut(s)	1986
XmnI	GAANNNNTTC	2 cut(s)	1564, 1880
XspI	CTAG	1 cut(s)	1919
ZraI	GACGTC	1 cut(s)	39
Zsp2I	ATGCAT	2 cut(s)	84, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.