Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002476

Physical Location & Seq

Genomic Coordinates Reverse (-)

5674910 .. 5680143

Gene Structure 5234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0072000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3606 bp

ATGCTTCACAGGAGCTTCAAGCCCGCCAAATGCAAAACGGCGTTGAAGCTTGCCGTTTCGAGAATAAAGCTGTTGAAGAATAAGAAAGATGCCCAGGTGAAGCAGATAAAGAGGGAATTGGCCCAATTGCTGGAGAGTGGTCAGTACAGGACTGCTAGGATTCGGGTTGAACATGTGGTGAGGGAAGAGAAGTTGAGGGCAGCGTATGAACTTATCGAGATATATTGCGAACTTGTTGCAGCACGATTGCCTATGGTTGAATCGCAGAAAAACTGCCCAATTGATCTGAAGGAAGCAGTATCAAGTGTAATTTTTGCATCTCCTAGATGTGCGGACGTACCAGAACTCATGGACATCCGCAAGCACTTCACAGCAAAATATGGAAAGGAGTTCGTCTCTGCAGCTGTTGAACTGCGGCCGGATAGTGGTGTAAGCCGCATGTTAATAGAGAAATTATCTACCAAATCACCTGATGGCCCTACCAAGATGAAAATTTTGGCTGCAATTGCAGAGGAACATAATGTCAAATGGGATCCCGAGGCATTTGAAGAGAAGCCTCCTGAGGACCTGCTGGTAAGAATGAACGGACCAAATACGTTTGGAATGGCCAGTATGGATTCTGCTCCACCTCCACCTACTCATGATGTCAGGGGACCTCCTAATGTCCAAGTTCCGCCTAATAGCATGGCCAGTAAAGCTCATGTGGAACCTCCCTCTGGTCCACCTCCACCTGATCAACCTCCAATTGCTCAAGTTCCACGCAGAAATTATGAGTATCACAATGGACCTGTGAATTCTAATGAGCAGAATGCAAGATCATCACCTCACTTGGAGGATTCTGCTTCTACAAATGTTTCTGCCAACAAAGCAACCACATCTGCCAAATTTCATCCAGAAACGACATCTTCAGAAACCAGAAGCAGTCGAATGGAAATGCATGTATTTCCTGGGGATGAAAGTTCTTCGGGCAGGCAGAATTGGAATATGCAATTTAAGGATGCTGCATCTGCAGCACAGGCAGCTGCTGAATCAGCAGAACTAGCAGGCATGGCAGCCAGAGCAGCTGCAGAACTCTCGAGGCAATATTCATCTGAAATGCACAATAAAAGTAATCAGTCAGCCTCTGTGCCAACTAATTCAAGTTCCATGAACAATGACCATTTGGGGAATAGTCTCCAGACGGCAGATCGATATCCTCAAAAGAAGTCACCTGAACGTCATGACATTTTAGATAAGGCGAGCATGAAGAGACAGTCTGGTAATTCTGAGGATATGCATGCAACTGAGATGCAAACTGCTATCAAACCTGAGAATATTTCTTATTTTGGAGATATAAGATCTGAAAAGAAATCTAGCAGGACTTCCTCCCCATCTAATTCAAGTGTTGGTAGCGATCATCAGGAAGATGTTTTGAAAGAGGATGATCATATTAATTACTTTGCAGATCTGGGTACTGGAAAACAATCTATCCGGTCTTCCTCTCCTTCTCATTCGGGACATTTGAGTAACAATCACGAAAATTTCGCTAGTGTTTCTGGTGAGGGTTCTTTTGTTAGTGATGTTAACATCCATCAAAGCACAATTGGAATGAATTCTGAGGGAAATGCTCCTCTGGTTTTTGATGATTCTGGTTCAGACGATGATAATTACAAGGGACAAGAATCAAGTTTGTTTTTTTCTTCTCCTGCTAGAAATTCATTTCCTTCAGCTAGTTTAGATCCTTGGAGCTTTGAGCAAAAGAGAGATGAGGTACCATTCAAGTCCGTTTCACCATTACGTTCTTCATCAGTGCAGCACTCCCTTCCCATCTTTTCTGAAGGTTTGACAGGTTCTACAGTCCCTTCGGAACCAAATGACTTCGTGCCTGTTACTTTTGATGCTTCAGATGGCCCAAGTTCAGACAGTGAGGAGGAGTTGGACACGTCTATGCTTGTCCTGAGCAAAGATTCTAAATTTTATCATGAGAAGACTGTTCAATCCATAAATTCGGGAAAGAGCCAGAGTGCAAGCCACAGGTCATTAGCATCTTCATCCTCTGATGAGGTACATCCTGAGAGAACCCAGGGAATTGAATATAGTGTTTTCTCAGATAAAAGGTTTGATGATGATGAATTGCCCGGTAGTGAACCATCTCCAAGGCTGAAAAAATCAGGATTAGATACAAGTGCCAAGGATGATTTACCTCAAACAGTGAAAGACAGTGAGGAATGTAGTTGTGTAAGTGATACTGACAATGAGTTGTTGGCCTTTGGGGTCTTGAAAGGTGGCCTTCGGAACAAGGGTTATAGGCATCCACCATATAATCGGAATCCATCAGGCAATGATTTTTTGGGCAAACAAATTACTCAAGAGACTCCAACAGTCAGGACTTCCGATGTTTCTCATACGTCTATTGAAGAGCCATATAGCCGGAAAGGGAGCACTAAGCTAAATAAGGAACAAAGCACTAAAACCCCAGTCACACATGTCACTCCTGATGATGATTCTTCAGAGGATGAACTCTCACATGAAACTCTAAGCAGTAGTCGCCAAGACCTGTACAATCAGAAATCGGTCTCTCGAGTAGTACATGATGATTCTTCAGAGGATGAATTCTCACATGAAACTCTTAGCAATAGTCGCCAAGACCTGTCCCATCATAAATCGGTATCCCAAGGAAAGACAAGCTCAACGTCTGCATTTTTCTTTAATTCAGAGGATAGTGAGGCTGAGGAAGATGTTCCTAGAAAGATTTCCACCACCATTGCTCGTCCAAGTTCAAAATTTTCTAGAAGGACACAACCCTCTTCTTCAAATTCTGTTAGAAGTTCTAGCATAAGGACAACAGCTGTTCCTGATGCACCAAGGACTTCAGACTATGGAAAATCCTCTTCAAGAAGTTCCAATGACGCTGAAACTCTACCAGAGCCCTCAAGAAGTCAGGATTGGCAGAGACCTATAGAACAAACAAGTTCTTATTCAATTCCAGAATCCAAGAAGACTGGGACATCAGTCAATGGAAATTCCTCCTCAAGAAGTTCTTATGCCACTAAAACTCTACCAAGTGCCTCATCCCAGACCAAGCGCTCAGAACGTTTGGCTAGTCAGGAGTGGCGTAGACCAGTAGAACAAGCAGCACCTAAACCAATACCAGAATCTAAGAGGTCCTCGCGTGTGGAGACTTCAAACTCATTTGCAAGGGAGGAATCATCCAATACTCCAATGACTGTAAGATCAGAGAGAACTGAAGCTACTGAAACTTCGAAGTCCTCGGGTTCAAAGTCATTTGGAAGAGAACAATCATCTAATCCTCCAAAGATTGAAAGATCAGAAAGCAGCGAAAGTTCAAAGTCCTCGGGTTTTAAGTCATTTGCAAGAGACCAATCGTCCAATCTTCCTGCAAAGGTTGTAAGATCACAGAGAACTGACCCTTCAAAGTTCTCTCCTCCAAAGTCATTTACAAGGGACCAAACTTCCAATCCTCCTCGAAAGATTGTAAGATCAGAGAGCGCTGAAACTCCGAAGTCCTCTTCTTCAGTGGGGAAGGCTTCTCATGTCCACCCGAAGCTTCCCGACTCTGATGACTTGTTTGCCAAGTTTACAGCCCTCAAGCAGAATCGACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0005773 GO:0005911 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030054 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0055029 GO:0055044 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_R

Protein Analysis

1201

Amino Acids

131.9

Weight (kDa)

6.32

Isoelectric Point (pI)

67.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ist1	PF03398	12 - 176	4.3e-60	Regulator of Vps4 activity in the MVB pathway

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35800 AT4G35800
fragaria_vesca	FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070
malus_domestica	MD02G1123200.v1.1 MD02G1123400.v1.1 MD02G1125500.v1.1 MD02G1125800.v1.1 MD15G1237200.v1.1
prunus_persica	Prupe.7G175200_v2.0.a1
pyrus_communis	pycom02g09610 pycom15g21110
rosa_chinensis	RchiOBHm_Chr2g0098321 RchiOBHm_Chr2g0098331
rosa_laevigata	RLG00000016790 RLG00000016791
rosa_multiflora	Rmu_co8358581.1_g000001 Rmu_sc0003434.1_g000008 Rmu_sc0023772.1_g000002 Rmu_sc0042863.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144060 Rroxscaffold_2G00144070
rosa_rugosa	Rorug02G0072000 Rorug02G0072000 Rorug02G0072100
rosa_samantha	Rh2AG119100 Rh2AG119200 Rh2BG122300 Rh2BG122400 Rh2CG123900 Rh2CG124000 Rh2DG123900 Rh2DG124000
rosa_wichuraiana	Rw2G009330 Rw2G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	576
Acc65I	GGTACC	1 cut(s)	1750
AccB1I	GGYRCC	1 cut(s)	1750
AccB7I	CCANNNNNTGG	1 cut(s)	130
AccI	GTMKAC	1 cut(s)	3097
AccII	CGCG	1 cut(s)	3151
AciI	CCGC	6 cut(s)	24, 332, 358, 415, 436, 674
AclI	AACGTT	1 cut(s)	3073
AclWI	GGATC	3 cut(s)	527, 540, 1712
AcoI	YGGCCR	3 cut(s)	416, 606, 687
AfaI	GTAC	7 cut(s)	146, 339, 1453, 1752, 2046, 2540, 2568
AfeI	AGCGCT	2 cut(s)	3065, 3490
AfiI	CCNNNNNNNGG	3 cut(s)	130, 425, 716
AflIII	ACRYGT	3 cut(s)	172, 1920, 2464
AhdI	GACNNNNNGTC	1 cut(s)	3364
AjiI	CACGTC	1 cut(s)	1923
AjnI	CCWGG	3 cut(s)	93, 946, 2061
AjuI	GAANNNNNNNTTGG	2 cut(s)	2908, 2940
Alw21I	GWGCWC	1 cut(s)	2423
Alw26I	GTCTC	8 cut(s)	400, 1178, 1243, 2345, 2560, 2926, 3152, 3351
AlwI	GGATC	3 cut(s)	527, 540, 1712
AlwNI	CAGNNNCTG	2 cut(s)	1025, 1124
Ama87I	CYCGRG	5 cut(s)	536, 1075, 2559, 3250, 3334
Aor51HI	AGCGCT	2 cut(s)	3065, 3490
AoxI	GGCC	8 cut(s)	120, 416, 475, 606, 687, 1888, 2244, 2266
AseI	ATTAAT	1 cut(s)	1431
Asp700I	GAANNNNTTC	3 cut(s)	1591, 2718, 2731
Asp718I	GGTACC	1 cut(s)	1750
AspLEI	GCGC	2 cut(s)	3066, 3491
AsuC2I	CCSGG	1 cut(s)	2118
AsuHPI	GGTGA	7 cut(s)	109, 190, 459, 813, 1200, 1550, 1761
AsuII	TTCGAA	1 cut(s)	3242
AvaI	CYCGRG	5 cut(s)	536, 1075, 2559, 3250, 3334
AvaII	GGWCC	7 cut(s)	565, 587, 653, 719, 785, 3144, 3445
AxyI	CCTNAGG	1 cut(s)	561
BalI	TGGCCA	2 cut(s)	608, 689
BamHI	GGATCC	1 cut(s)	532
BanI	GGYRCC	1 cut(s)	1750
BanII	GRGCYC	1 cut(s)	2910
BbsI	GAAGAC	3 cut(s)	1467, 1973, 2984
Bbv12I	GWGCWC	1 cut(s)	2423
BbvCI	CCTCAGC	1 cut(s)	2709
BccI	CCATC	8 cut(s)	467, 1378, 1578, 1814, 1880, 2137, 2320, 2643
BceAI	ACGGC	3 cut(s)	38, 54, 1197
BcgI	CGANNNNNNTGC	4 cut(s)	218, 252, 1056, 1090
BciT130I	CCWGG	3 cut(s)	95, 948, 2063
BciVI	GTATCC	1 cut(s)	2659
BclI	TGATCA	2 cut(s)	733, 1423
BcnI	CCSGG	1 cut(s)	2118
BcoDI	GTCTC	8 cut(s)	400, 1178, 1243, 2345, 2560, 2926, 3152, 3351
BfmI	CTRYAG	5 cut(s)	399, 1008, 1065, 1833, 2937
BfoI	RGCGCY	2 cut(s)	3067, 3492
BfuAI	ACCTGC	1 cut(s)	576
BfuI	GTATCC	1 cut(s)	2659
BglII	AGATCT	2 cut(s)	1337, 1444
Bme1390I	CCNGG	4 cut(s)	95, 948, 2063, 2118
Bme18I	GGWCC	7 cut(s)	565, 587, 653, 719, 785, 3144, 3445
BmeRI	GACNNNNNGTC	1 cut(s)	3364
BmeT110I	CYCGRG	5 cut(s)	536, 1075, 2559, 3250, 3334
BmgBI	CACGTC	1 cut(s)	1923
BmiI	GGNNCC	6 cut(s)	534, 654, 708, 1752, 1848, 3446
BmrFI	CCNGG	4 cut(s)	95, 948, 2063, 2118
BmrI	ACTGGG	2 cut(s)	2450, 2991
BmsI	GCATC	9 cut(s)	79, 326, 988, 1013, 1278, 1867, 2033, 2299, 2827
BmuI	ACTGGG	2 cut(s)	2450, 2991
BoxI	GACNNNNGTC	1 cut(s)	2990
BpiI	GAAGAC	3 cut(s)	1467, 1973, 2984
BplI	GAGNNNNNCTC	2 cut(s)	380, 412
BpmI	CTGGAG	2 cut(s)	152, 1160
Bpu10I	CCTNAGC	2 cut(s)	1937, 2709
Bpu14I	TTCGAA	1 cut(s)	3242
BpuEI	CTTGAG	5 cut(s)	735, 2331, 2896, 2995, 3572
BpuMI	CCSGG	1 cut(s)	2118
Bsa29I	ATCGAT	1 cut(s)	1189
BsaBI	GATNNNNATC	1 cut(s)	1191
BsaI	GGTCTC	3 cut(s)	2560, 2926, 3351
BsaWI	WCCGGW	1 cut(s)	1470
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 425, 716
Bse1I	ACTGG	6 cut(s)	609, 690, 1459, 2456, 2986, 3101
Bse21I	CCTNAGG	1 cut(s)	561
Bse3DI	GCAATG	2 cut(s)	2326, 2742
Bse8I	GATNNNNATC	1 cut(s)	1191
BseBI	CCWGG	3 cut(s)	95, 948, 2063
BseCI	ATCGAT	1 cut(s)	1189
BseJI	GATNNNNATC	1 cut(s)	1191
BseLI	CCNNNNNNNGG	3 cut(s)	130, 425, 716
BseMI	GCAATG	2 cut(s)	2326, 2742
BseNI	ACTGG	6 cut(s)	609, 690, 1459, 2456, 2986, 3101
BseRI	GAGGAG	6 cut(s)	1599, 1922, 1925, 2998, 3414, 3453
BseX3I	CGGCCG	1 cut(s)	416
BsgI	GTGCAG	1 cut(s)	1811
Bsh1236I	CGCG	1 cut(s)	3151
Bsh1285I	CGRYCG	1 cut(s)	419
BshFI	GGCC	8 cut(s)	122, 418, 477, 608, 689, 1890, 2246, 2268
BshNI	GGYRCC	1 cut(s)	1750
BshVI	ATCGAT	1 cut(s)	1189
BsiEI	CGRYCG	1 cut(s)	419
BsiHKAI	GWGCWC	1 cut(s)	2423
BsiHKCI	CYCGRG	5 cut(s)	536, 1075, 2559, 3250, 3334
BsiSI	CCGG	4 cut(s)	419, 1471, 2118, 2410
BslFI	GGGAC	7 cut(s)	666, 1509, 1668, 1823, 2617, 2998, 3458
BslI	CCNNNNNNNGG	3 cut(s)	130, 425, 716
BsmAI	GTCTC	8 cut(s)	400, 1178, 1243, 2345, 2560, 2926, 3152, 3351
BsmBI	CGTCTC	1 cut(s)	400
BsmFI	GGGAC	7 cut(s)	666, 1509, 1668, 1823, 2617, 2998, 3458
BsmI	GAATGC	1 cut(s)	814
BsnI	GGCC	8 cut(s)	122, 418, 477, 608, 689, 1890, 2246, 2268
Bso31I	GGTCTC	3 cut(s)	2560, 2926, 3351
BsoBI	CYCGRG	5 cut(s)	536, 1075, 2559, 3250, 3334
Bsp119I	TTCGAA	1 cut(s)	3242
Bsp1286I	GDGCHC	2 cut(s)	2423, 2910
Bsp1407I	TGTACA	1 cut(s)	2538
BspACI	CCGC	6 cut(s)	24, 332, 358, 415, 436, 674
BspANI	GGCC	8 cut(s)	122, 418, 477, 608, 689, 1890, 2246, 2268
BspDI	ATCGAT	1 cut(s)	1189
BspFNI	CGCG	1 cut(s)	3151
BspHI	TCATGA	3 cut(s)	640, 1219, 1960
BspLI	GGNNCC	6 cut(s)	534, 654, 708, 1752, 1848, 3446
BspMAI	CTGCAG	3 cut(s)	403, 1012, 1069
BspMI	ACCTGC	1 cut(s)	576
BspPI	GGATC	3 cut(s)	527, 540, 1712
BspQI	GCTCTTC	1 cut(s)	2391
BspT104I	TTCGAA	1 cut(s)	3242
BspT107I	GGYRCC	1 cut(s)	1750
BspTNI	GGTCTC	3 cut(s)	2560, 2926, 3351
BsrDI	GCAATG	2 cut(s)	2326, 2742
BsrGI	TGTACA	1 cut(s)	2538
BsrI	ACTGG	6 cut(s)	609, 690, 1459, 2456, 2986, 3101
BssT1I	CCWWGG	5 cut(s)	1721, 2135, 2169, 2653, 2843
Bst2UI	CCWGG	3 cut(s)	95, 948, 2063
Bst4CI	ACNGT	8 cut(s)	1254, 1837, 1904, 1972, 2191, 2201, 2362, 3208
Bst6I	CTCTTC	8 cut(s)	180, 543, 1241, 2391, 2791, 2875, 3265, 3514
BstAUI	TGTACA	1 cut(s)	2538
BstBI	TTCGAA	1 cut(s)	3242
BstC8I	GCNNGC	8 cut(s)	24, 51, 362, 971, 1045, 1240, 1278, 2008
BstFNI	CGCG	1 cut(s)	3151
BstH2I	RGCGCY	2 cut(s)	3067, 3492
BstHHI	GCGC	2 cut(s)	3066, 3491
BstMAI	GTCTC	8 cut(s)	400, 1178, 1243, 2345, 2560, 2926, 3152, 3351
BstMCI	CGRYCG	1 cut(s)	419
BstNI	CCWGG	3 cut(s)	95, 948, 2063
BstNSI	RCATGY	5 cut(s)	176, 442, 941, 1280, 2468
BstPAI	GACNNNNGTC	1 cut(s)	2990
BstSCI	CCNGG	4 cut(s)	93, 946, 2061, 2116
BstSFI	CTRYAG	5 cut(s)	399, 1008, 1065, 1833, 2937
BstUI	CGCG	1 cut(s)	3151
BstV2I	GAAGAC	3 cut(s)	1467, 1973, 2984
BstX2I	RGATCY	4 cut(s)	532, 1337, 1444, 1717
BstYI	RGATCY	4 cut(s)	532, 1337, 1444, 1717
BstZI	CGGCCG	1 cut(s)	416
Bsu15I	ATCGAT	1 cut(s)	1189
Bsu36I	CCTNAGG	1 cut(s)	561
BsuI	GTATCC	1 cut(s)	2659
BsuRI	GGCC	8 cut(s)	122, 418, 477, 608, 689, 1890, 2246, 2268
BsuTUI	ATCGAT	1 cut(s)	1189
BtrI	CACGTC	1 cut(s)	1923
BtsIMutI	CAGTG	5 cut(s)	1794, 1909, 2196, 2206, 3522
BveI	ACCTGC	1 cut(s)	576
Cac8I	GCNNGC	8 cut(s)	24, 51, 362, 971, 1045, 1240, 1278, 2008
CaiI	CAGNNNCTG	2 cut(s)	1025, 1124
CciI	TCATGA	3 cut(s)	640, 1219, 1960
CfoI	GCGC	2 cut(s)	3066, 3491
ClaI	ATCGAT	1 cut(s)	1189
CseI	GACGC	1 cut(s)	2897
Csp6I	GTAC	7 cut(s)	145, 338, 1452, 1751, 2045, 2539, 2567
CspCI	CAANNNNNGTGG	2 cut(s)	2725, 2760
CviQI	GTAC	7 cut(s)	145, 338, 1452, 1751, 2045, 2539, 2567
DriI	GACNNNNNGTC	1 cut(s)	3364
EaeI	YGGCCR	3 cut(s)	416, 606, 687
EagI	CGGCCG	1 cut(s)	416
Eam1104I	CTCTTC	8 cut(s)	180, 543, 1241, 2391, 2791, 2875, 3265, 3514
Eam1105I	GACNNNNNGTC	1 cut(s)	3364
EarI	CTCTTC	8 cut(s)	180, 543, 1241, 2391, 2791, 2875, 3265, 3514
EciI	GGCGGA	1 cut(s)	663
EclXI	CGGCCG	1 cut(s)	416
Eco130I	CCWWGG	5 cut(s)	1721, 2135, 2169, 2653, 2843
Eco24I	GRGCYC	1 cut(s)	2910
Eco31I	GGTCTC	3 cut(s)	2560, 2926, 3351
Eco32I	GATATC	1 cut(s)	1193
Eco47I	GGWCC	7 cut(s)	565, 587, 653, 719, 785, 3144, 3445
Eco47III	AGCGCT	2 cut(s)	3065, 3490
Eco52I	CGGCCG	1 cut(s)	416
Eco81I	CCTNAGG	1 cut(s)	561
Eco88I	CYCGRG	5 cut(s)	536, 1075, 2559, 3250, 3334
EcoO109I	RGGNCCY	3 cut(s)	565, 653, 3144
EcoRI	GAATTC	3 cut(s)	793, 1591, 2591
EcoRII	CCWGG	3 cut(s)	93, 946, 2061
EcoRV	GATATC	1 cut(s)	1193
EcoT14I	CCWWGG	5 cut(s)	1721, 2135, 2169, 2653, 2843
EcoT22I	ATGCAT	2 cut(s)	939, 1278
EcoT38I	GRGCYC	1 cut(s)	2910
ErhI	CCWWGG	5 cut(s)	1721, 2135, 2169, 2653, 2843
Esp3I	CGTCTC	1 cut(s)	400
FalI	AAGNNNNNCTT	4 cut(s)	2253, 2285, 3004, 3036
FaqI	GGGAC	7 cut(s)	666, 1509, 1668, 1823, 2617, 2998, 3458
FauI	CCCGC	1 cut(s)	31
FbaI	TGATCA	2 cut(s)	733, 1423
FblI	GTMKAC	1 cut(s)	3097
FriOI	GRGCYC	1 cut(s)	2910
GlaI	GCGC	2 cut(s)	3065, 3490
GsuI	CTGGAG	2 cut(s)	152, 1160
HaeII	RGCGCY	2 cut(s)	3067, 3492
HaeIII	GGCC	8 cut(s)	122, 418, 477, 608, 689, 1890, 2246, 2268
HapII	CCGG	4 cut(s)	419, 1471, 2118, 2410
HgaI	GACGC	1 cut(s)	2897
HhaI	GCGC	2 cut(s)	3066, 3491
Hin6I	GCGC	2 cut(s)	3064, 3489
HinP1I	GCGC	2 cut(s)	3064, 3489
HincII	GTYRAC	1 cut(s)	1564
HindII	GTYRAC	1 cut(s)	1564
HindIII	AAGCTT	2 cut(s)	47, 3545
HpaI	GTTAAC	1 cut(s)	1564
HpaII	CCGG	4 cut(s)	419, 1471, 2118, 2410
HphI	GGTGA	7 cut(s)	109, 190, 459, 813, 1200, 1550, 1761
Hpy166II	GTNNAC	6 cut(s)	722, 1564, 2126, 3098, 3538, 3579
Hpy8I	GTNNAC	6 cut(s)	722, 1564, 2126, 3098, 3538, 3579
HpyCH4III	ACNGT	8 cut(s)	1254, 1837, 1904, 1972, 2191, 2201, 2362, 3208
HpyCH4IV	ACGT	8 cut(s)	336, 596, 1216, 1777, 1922, 2387, 2672, 3073
HpySE526I	ACGT	8 cut(s)	336, 596, 1216, 1777, 1922, 2387, 2672, 3073
HspAI	GCGC	2 cut(s)	3064, 3489
KpnI	GGTACC	1 cut(s)	1754
Ksp22I	TGATCA	2 cut(s)	733, 1423
KspAI	GTTAAC	1 cut(s)	1564
LguI	GCTCTTC	1 cut(s)	2391
LmnI	GCTCC	5 cut(s)	12, 628, 1612, 1725, 2418
LweI	GCATC	9 cut(s)	79, 326, 988, 1013, 1278, 1867, 2033, 2299, 2827
MaeII	ACGT	8 cut(s)	336, 596, 1216, 1777, 1922, 2387, 2672, 3073
MaeIII	GTNAC	5 cut(s)	1206, 1505, 1867, 2458, 2467
MfeI	CAATTG	5 cut(s)	125, 279, 504, 744, 1581
MflI	RGATCY	4 cut(s)	532, 1337, 1444, 1717
MhlI	GDGCHC	2 cut(s)	2423, 2910
MlsI	TGGCCA	2 cut(s)	608, 689
MluNI	TGGCCA	2 cut(s)	608, 689
MlyI	GAGTC	2 cut(s)	2347, 3548
MmeI	TCCRAC	2 cut(s)	1896, 2381
Mox20I	TGGCCA	2 cut(s)	608, 689
Mph1103I	ATGCAT	2 cut(s)	939, 1278
MroXI	GAANNNNTTC	3 cut(s)	1591, 2718, 2731
MscI	TGGCCA	2 cut(s)	608, 689
MseI	TTAA	6 cut(s)	443, 993, 1431, 1563, 2688, 3342
MslI	CAYNNNNRTG	1 cut(s)	1925
Msp20I	TGGCCA	2 cut(s)	608, 689
MspA1I	CMGCKG	4 cut(s)	404, 1022, 1064, 2828
MspI	CCGG	4 cut(s)	419, 1471, 2118, 2410
MspR9I	CCNGG	4 cut(s)	95, 948, 2063, 2118
MunI	CAATTG	5 cut(s)	125, 279, 504, 744, 1581
Mva1269I	GAATGC	1 cut(s)	814
MvaI	CCWGG	3 cut(s)	95, 948, 2063
MvnI	CGCG	1 cut(s)	3151
NciI	CCSGG	1 cut(s)	2118
NlaIV	GGNNCC	6 cut(s)	534, 654, 708, 1752, 1848, 3446
NmuCI	GTSAC	3 cut(s)	1206, 2458, 2467
NsiI	ATGCAT	2 cut(s)	939, 1278
NspI	RCATGY	5 cut(s)	176, 442, 941, 1280, 2468
NspV	TTCGAA	1 cut(s)	3242
PaeI	GCATGC	1 cut(s)	1280
PaeR7I	CTCGAG	2 cut(s)	1075, 2559
PagI	TCATGA	3 cut(s)	640, 1219, 1960
PasI	CCCWGGG	1 cut(s)	2062
PciI	ACATGT	2 cut(s)	172, 2464
PciSI	GCTCTTC	1 cut(s)	2391
PctI	GAATGC	1 cut(s)	814
PdmI	GAANNNNTTC	3 cut(s)	1591, 2718, 2731
PflMI	CCANNNNNTGG	1 cut(s)	130
PleI	GAGTC	2 cut(s)	2347, 3548
PpsI	GAGTC	2 cut(s)	2347, 3548
PpuMI	RGGWCCY	3 cut(s)	565, 653, 3144
PscI	ACATGT	2 cut(s)	172, 2464
PshAI	GACNNNNGTC	1 cut(s)	2990
PshBI	ATTAAT	1 cut(s)	1431
Psp1406I	AACGTT	1 cut(s)	3073
Psp5II	RGGWCCY	3 cut(s)	565, 653, 3144
Psp6I	CCWGG	3 cut(s)	93, 946, 2061
PspGI	CCWGG	3 cut(s)	93, 946, 2061
PspN4I	GGNNCC	6 cut(s)	534, 654, 708, 1752, 1848, 3446
PspPPI	RGGWCCY	3 cut(s)	565, 653, 3144
PsrI	GAACNNNNNNTAC	2 cut(s)	3214, 3246
PstI	CTGCAG	3 cut(s)	403, 1012, 1069
PstNI	CAGNNNCTG	2 cut(s)	1025, 1124
PsuI	RGATCY	4 cut(s)	532, 1337, 1444, 1717
PvuII	CAGCTG	4 cut(s)	404, 1022, 1064, 2828
RsaI	GTAC	7 cut(s)	146, 339, 1453, 1752, 2046, 2540, 2568
RsaNI	GTAC	7 cut(s)	145, 338, 1452, 1751, 2045, 2539, 2567
RseI	CAYNNNNRTG	1 cut(s)	1925
SapI	GCTCTTC	1 cut(s)	2391
SaqAI	TTAA	6 cut(s)	443, 993, 1431, 1563, 2688, 3342
SchI	GAGTC	2 cut(s)	2347, 3548
ScrFI	CCNGG	4 cut(s)	95, 948, 2063, 2118
SduI	GDGCHC	2 cut(s)	2423, 2910
SfaNI	GCATC	9 cut(s)	79, 326, 988, 1013, 1278, 1867, 2033, 2299, 2827
SfcI	CTRYAG	5 cut(s)	399, 1008, 1065, 1833, 2937
Sfr274I	CTCGAG	2 cut(s)	1075, 2559
SfuI	TTCGAA	1 cut(s)	3242
SinI	GGWCC	7 cut(s)	565, 587, 653, 719, 785, 3144, 3445
SlaI	CTCGAG	2 cut(s)	1075, 2559
SmiMI	CAYNNNNRTG	1 cut(s)	1925
SmlI	CTYRAG	7 cut(s)	750, 1075, 2346, 2559, 2911, 3010, 3587
SmoI	CTYRAG	7 cut(s)	750, 1075, 2346, 2559, 2911, 3010, 3587
SphI	GCATGC	1 cut(s)	1280
SsiI	CCGC	6 cut(s)	24, 332, 358, 415, 436, 674
SspI	AATATT	2 cut(s)	1085, 1315
StyD4I	CCNGG	4 cut(s)	93, 946, 2061, 2116
StyI	CCWWGG	5 cut(s)	1721, 2135, 2169, 2653, 2843
TaaI	ACNGT	8 cut(s)	1254, 1837, 1904, 1972, 2191, 2201, 2362, 3208
TaiI	ACGT	8 cut(s)	339, 599, 1219, 1780, 1925, 2390, 2675, 3076
TaqI	TCGA	9 cut(s)	59, 216, 925, 1076, 1189, 2560, 3242, 3466, 3598
TaqII	GACCGA	1 cut(s)	2542
TatI	WGTACW	3 cut(s)	144, 2538, 2566
TauI	GCSGC	2 cut(s)	418, 438
Tru1I	TTAA	6 cut(s)	443, 993, 1431, 1563, 2688, 3342
Tru9I	TTAA	6 cut(s)	443, 993, 1431, 1563, 2688, 3342
TscAI	CASTG	5 cut(s)	1794, 1909, 2196, 2206, 3522
TseFI	GTSAC	3 cut(s)	1206, 2458, 2467
Tsp45I	GTSAC	3 cut(s)	1206, 2458, 2467
TspGWI	ACGGA	2 cut(s)	600, 1753
TspRI	CASTG	5 cut(s)	1794, 1909, 2196, 2206, 3522
Van91I	CCANNNNNTGG	1 cut(s)	130
VpaK11BI	GGWCC	7 cut(s)	565, 587, 653, 719, 785, 3144, 3445
VspI	ATTAAT	1 cut(s)	1431
XbaI	TCTAGA	1 cut(s)	2768
XceI	RCATGY	5 cut(s)	176, 442, 941, 1280, 2468
XhoI	CTCGAG	2 cut(s)	1075, 2559
XmiI	GTMKAC	1 cut(s)	3097
XmnI	GAANNNNTTC	3 cut(s)	1591, 2718, 2731
Zsp2I	ATGCAT	2 cut(s)	939, 1278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.