Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8358581.1

Orthogroup ID

OG0002476

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 928

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8358581.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 847 bp

atggaaaagatcaatgaaactatttccaaggcaaaaaatgaagtgaaagaacttatcagtaaagcccaatccaagagcctggagcctgaaccggggcgaactatgatggattcctttgaaaacaaagtgaatcaggtcttaaatagggctcgtgatgatgctggaagtagtgctcagaagagtttgtctgagagtaacaatcttaaggctatggttacagctggctctaagggaagttttatcaacatatcacagatgactgcttgtgtgggacagcagaatgttgagggtaaacgaatcccatatgggttcatagaccgtactttgccccacttcactaaggacgactatggaccagaaagtcgtggctttgtagagaattcataccttcgaggactaactccacaggagttcttttttcatgctatgggaggtagggaaggtcttatagatactgcagttaagacatccgagactgggtatatccagaggagactggtgaaggctatggaggatattatggtcaaatatgatgggactgtgagaaattcgttgggggacgtcatacagtttctctatggagaagatggaatggatgctgtatggatagaatcacaaaagctggattctcttaaaatgaagaagaaagagtttgacaagactttcgcttatgtgtttgatgatgaaaattggaatccggactatatgttgcctgaacatgttgaggatctaaagactattagagagttccgcaatgtgtttgatgcagaagtttcaaaacttgaaactgataggcttcaacttggcacagagattgctgtcactggtgataattcttggccattgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0005773 GO:0005911 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030054 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0055029 GO:0055044 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_R

Protein Analysis

282

Amino Acids

31.96

Weight (kDa)

5.1

Isoelectric Point (pI)

35.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35800 AT4G35800
fragaria_vesca	FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070
malus_domestica	MD02G1123200.v1.1 MD02G1123400.v1.1 MD02G1125500.v1.1 MD02G1125800.v1.1 MD15G1237200.v1.1
prunus_persica	Prupe.7G175200_v2.0.a1
pyrus_communis	pycom02g09610 pycom15g21110
rosa_chinensis	RchiOBHm_Chr2g0098321 RchiOBHm_Chr2g0098331
rosa_laevigata	RLG00000016790 RLG00000016791
rosa_multiflora	Rmu_co8358581.1_g000001 Rmu_sc0003434.1_g000008 Rmu_sc0023772.1_g000002 Rmu_sc0042863.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144060 Rroxscaffold_2G00144070
rosa_rugosa	Rorug02G0072000 Rorug02G0072000 Rorug02G0072100
rosa_samantha	Rh2AG119100 Rh2AG119200 Rh2BG122300 Rh2BG122400 Rh2CG123900 Rh2CG124000 Rh2DG123900 Rh2DG124000
rosa_wichuraiana	Rw2G009330 Rw2G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	360
AatII	GACGTC	1 cut(s)	564
AccIII	TCCGGA	1 cut(s)	697
AciI	CCGC	1 cut(s)	751
AclWI	GGATC	1 cut(s)	735
AcoI	YGGCCR	1 cut(s)	839
AcsI	RAATTY	2 cut(s)	379, 547
AcyI	GRCGYC	1 cut(s)	561
AfaI	GTAC	1 cut(s)	322
AfiI	CCNNNNNNNGG	2 cut(s)	92, 477
AflII	CTTAAG	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	718
AgsI	TTSAA	4 cut(s)	119, 777, 785, 800
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	2 cut(s)	221, 622
AluI	AGCT	2 cut(s)	221, 622
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	2 cut(s)	467, 487
AlwI	GGATC	1 cut(s)	735
Aor13HI	TCCGGA	1 cut(s)	697
AoxI	GGCC	1 cut(s)	839
ApoI	RAATTY	2 cut(s)	379, 547
ArsI	GACNNNNNNTTYG	2 cut(s)	647, 679
AspS9I	GGNCC	1 cut(s)	353
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	2 cut(s)	511, 839
AvaII	GGWCC	1 cut(s)	353
BaeI	ACNNNNGTAYC	2 cut(s)	444, 477
BalI	TGGCCA	1 cut(s)	841
BanII	GRGCYC	1 cut(s)	151
BauI	CACGAG	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	175
BccI	CCATC	3 cut(s)	100, 527, 581
BciT130I	CCWGG	1 cut(s)	80
BcnI	CCSGG	1 cut(s)	93
BcoDI	GTCTC	2 cut(s)	467, 487
BfmI	CTRYAG	1 cut(s)	456
BfrI	CTTAAG	1 cut(s)	203
Bme1390I	CCNGG	2 cut(s)	80, 93
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	353
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	2 cut(s)	80, 93
BmrI	ACTGGG	1 cut(s)	486
BmsI	GCATC	3 cut(s)	148, 586, 754
BmuI	ACTGGG	1 cut(s)	486
BpmI	CTGGAG	1 cut(s)	101
BpuMI	CCSGG	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	561
BsaJI	CCNNGG	2 cut(s)	27, 92
BsaWI	WCCGGW	1 cut(s)	697
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 477
Bse1I	ACTGG	3 cut(s)	481, 501, 829
Bse3DI	GCAATG	2 cut(s)	760, 842
BseAI	TCCGGA	1 cut(s)	697
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	2 cut(s)	27, 92
BseGI	GGATG	2 cut(s)	467, 601
BseLI	CCNNNNNNNGG	2 cut(s)	92, 477
BseMI	GCAATG	2 cut(s)	760, 842
BseMII	CTCAG	2 cut(s)	180, 188
BseNI	ACTGG	3 cut(s)	481, 501, 829
BseRI	GAGGAG	1 cut(s)	505
BshFI	GGCC	1 cut(s)	841
BsiHKAI	GWGCWC	1 cut(s)	175
BsiSI	CCGG	2 cut(s)	92, 698
BslFI	GGGAC	3 cut(s)	285, 550, 572
BslI	CCNNNNNNNGG	2 cut(s)	92, 477
BsmAI	GTCTC	2 cut(s)	467, 487
BsmFI	GGGAC	3 cut(s)	285, 550, 572
BsnI	GGCC	1 cut(s)	841
Bsp1286I	GDGCHC	2 cut(s)	151, 175
Bsp13I	TCCGGA	1 cut(s)	697
Bsp143I	GATC	2 cut(s)	9, 727
BspACI	CCGC	1 cut(s)	751
BspANI	GGCC	1 cut(s)	841
BspCNI	CTCAG	2 cut(s)	181, 187
BspEI	TCCGGA	1 cut(s)	697
BspLI	GGNNCC	1 cut(s)	84
BspMAI	CTGCAG	1 cut(s)	460
BspPI	GGATC	1 cut(s)	735
BspTI	CTTAAG	1 cut(s)	203
BsrDI	GCAATG	2 cut(s)	760, 842
BsrI	ACTGG	3 cut(s)	481, 501, 829
BssECI	CCNNGG	2 cut(s)	27, 92
BssMI	GATC	2 cut(s)	9, 727
BssNI	GRCGYC	1 cut(s)	561
BssSI	CACGAG	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	3 cut(s)	320, 541, 570
Bst6I	CTCTTC	1 cut(s)	173
BstACI	GRCGYC	1 cut(s)	561
BstAFI	CTTAAG	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	4 cut(s)	174, 189, 228, 339
BstF5I	GGATG	2 cut(s)	467, 601
BstKTI	GATC	2 cut(s)	12, 730
BstMAI	GTCTC	2 cut(s)	467, 487
BstMBI	GATC	2 cut(s)	9, 727
BstNI	CCWGG	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	722
BstSCI	CCNGG	2 cut(s)	78, 91
BstSFI	CTRYAG	1 cut(s)	456
BstX2I	RGATCY	1 cut(s)	727
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	727
BsuRI	GGCC	1 cut(s)	841
BtsCI	GGATG	2 cut(s)	467, 601
BtsIMutI	CAGTG	1 cut(s)	822
Cac8I	GCNNGC	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	353
Csp6I	GTAC	1 cut(s)	321
CviAII	CATG	2 cut(s)	422, 719
CviQI	GTAC	1 cut(s)	321
DdeI	CTNAG	4 cut(s)	174, 189, 228, 339
DpnI	GATC	2 cut(s)	11, 729
DpnII	GATC	2 cut(s)	9, 727
DrdI	GACNNNNNNGTC	1 cut(s)	360
DseDI	GACNNNNNNGTC	1 cut(s)	360
EaeI	YGGCCR	1 cut(s)	839
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	353
EcoRI	GAATTC	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	2 cut(s)	425, 722
FaqI	GGGAC	3 cut(s)	285, 550, 572
FatI	CATG	2 cut(s)	421, 718
FauNDI	CATATG	1 cut(s)	304
FokI	GGATG	2 cut(s)	454, 608
FriOI	GRGCYC	1 cut(s)	151
GsuI	CTGGAG	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	841
HapII	CCGG	2 cut(s)	92, 698
Hin1I	GRCGYC	1 cut(s)	561
Hin1II	CATG	2 cut(s)	425, 722
HinfI	GANTC	6 cut(s)	110, 130, 297, 611, 626, 694
HpaII	CCGG	2 cut(s)	92, 698
HphI	GGTGA	2 cut(s)	511, 839
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	3 cut(s)	177, 190, 472
Hpy188III	TCNNGA	3 cut(s)	152, 487, 698
Hpy8I	GTNNAC	1 cut(s)	293
HpyAV	CCTTC	3 cut(s)	398, 434, 496
HpyCH4III	ACNGT	3 cut(s)	320, 541, 570
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	2 cut(s)	458, 767
HpyF3I	CTNAG	4 cut(s)	174, 189, 228, 339
HpySE526I	ACGT	1 cut(s)	561
Hsp92I	GRCGYC	1 cut(s)	561
Hsp92II	CATG	2 cut(s)	425, 722
Kpn2I	TCCGGA	1 cut(s)	697
Kzo9I	GATC	2 cut(s)	9, 727
LmnI	GCTCC	1 cut(s)	82
LweI	GCATC	3 cut(s)	148, 586, 754
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	3 cut(s)	194, 214, 820
MalI	GATC	2 cut(s)	11, 729
MboI	GATC	2 cut(s)	9, 727
MboII	GAAGA	4 cut(s)	190, 596, 652, 655
MflI	RGATCY	1 cut(s)	727
MhlI	GDGCHC	2 cut(s)	151, 175
MlsI	TGGCCA	1 cut(s)	841
MluCI	AATT	4 cut(s)	379, 547, 688, 832
MluNI	TGGCCA	1 cut(s)	841
MnlI	CCTC	6 cut(s)	280, 386, 425, 483, 505, 718
Mox20I	TGGCCA	1 cut(s)	841
MroI	TCCGGA	1 cut(s)	697
MscI	TGGCCA	1 cut(s)	841
MseI	TTAA	4 cut(s)	140, 204, 462, 633
Msp20I	TGGCCA	1 cut(s)	841
MspA1I	CMGCKG	1 cut(s)	221
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	2 cut(s)	92, 698
MspR9I	CCNGG	2 cut(s)	80, 93
MvaI	CCWGG	1 cut(s)	80
NciI	CCSGG	1 cut(s)	93
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	2 cut(s)	9, 727
NlaIII	CATG	2 cut(s)	425, 722
NlaIV	GGNNCC	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	820
NspI	RCATGY	1 cut(s)	722
PciI	ACATGT	1 cut(s)	718
PfeI	GAWTC	6 cut(s)	110, 130, 297, 611, 626, 694
PscI	ACATGT	1 cut(s)	718
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	353
PstI	CTGCAG	1 cut(s)	460
PsuI	RGATCY	1 cut(s)	727
PvuII	CAGCTG	1 cut(s)	221
RsaI	GTAC	1 cut(s)	322
RsaNI	GTAC	1 cut(s)	321
SaqAI	TTAA	4 cut(s)	140, 204, 462, 633
Sau3AI	GATC	2 cut(s)	9, 727
Sau96I	GGNCC	1 cut(s)	353
ScrFI	CCNGG	2 cut(s)	80, 93
SduI	GDGCHC	2 cut(s)	151, 175
SetI	ASST	7 cut(s)	138, 223, 390, 436, 445, 564, 624
SfaNI	GCATC	3 cut(s)	148, 586, 754
SfcI	CTRYAG	1 cut(s)	456
SinI	GGWCC	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	4 cut(s)	379, 547, 688, 832
SsiI	CCGC	1 cut(s)	751
StyD4I	CCNGG	2 cut(s)	78, 91
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	3 cut(s)	320, 541, 570
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	1 cut(s)	391
TasI	AATT	4 cut(s)	379, 547, 688, 832
TfiI	GAWTC	6 cut(s)	110, 130, 297, 611, 626, 694
Tru1I	TTAA	4 cut(s)	140, 204, 462, 633
Tru9I	TTAA	4 cut(s)	140, 204, 462, 633
TscAI	CASTG	1 cut(s)	829
TseFI	GTSAC	1 cut(s)	820
Tsp45I	GTSAC	1 cut(s)	820
TspDTI	ATGAA	7 cut(s)	30, 54, 301, 372, 410, 653, 699
TspRI	CASTG	1 cut(s)	829
Vha464I	CTTAAG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	353
XapI	RAATTY	2 cut(s)	379, 547
XceI	RCATGY	1 cut(s)	722
ZraI	GACGTC	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.