Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002476

Physical Location & Seq

Genomic Coordinates Reverse (-)

10749895 .. 10757572

Gene Structure 7678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47313

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5088 bp

ATGGATTTCCGGTTCCCGTACTCGCCTCTGGAGGTTGCGACGCCGAGCTCCGTCCAGTTCGGCATCCTCAGCCCCGGCGAGATCAGGCAAATGTCGGTGCTGGAGGTCGAGGATGGCCGTTCAATGCTGAACGGGAAGCCGGTGAGAGGCGGCTTGAGTGACCCTCGGCTTGGTCCGATTGACAGGCACAATAGGTGTGAGACTTGTGCCAATAACTTGAGCGAGTGCCCGGGCCATTTCGGTCACATTGAGCTCGCCAAGCCTGTGTTCCACTTCGGGTTTATGAAGACTCTGCTGTCTGTAATGCGCTGCGTTTGCTTCAATTGCTCCAAACTTCTACTCGATGAGGTTCTTAGCTTATTAAAGAGGATAAGTGATGAGGACTGCCAATTCTTGGGACTGAACCCTGAATATGCTCGACCAGATTGGATGATTTTACAAGTTCTTCCTATTCCTCCACCAGCTGTGAGACCCCCGGATGATTTAACACATCAGTTGTCCATGATTATTCGCCACAACGAGAATTTGAGGAAACAGGAAAAACATGGTTCAGCTGCTCATATCATTTCACAGTTTACACAAATCTTGCAATACTACATATCCACATATTTTGACAATAGCTTGCCTGGACTACCAAAGGCTGCTCATGGATCGACAAAGAGGCCCATTAAATCAATATGTTGTAGGCTTAAGGCAAAGCATGGCCGGATTAGAGGAAACTTGATGGGGAAGAGAGTCGATTTCTCAGCACGGACAGTTATTACACCAGATCCGAACCTTAGCCTTGATCAATTAGGAGTACCATGGAGCATTGCTATGAATCTCACATACACAGAGACTGTGACTCCATTTAATAAAGAAGGGTTGAAGGAGCTTGTTGAGTATGGGCCGCATCCCCCACCTGGACTAACTGGTGCAAAGTACATCATACGAGATGATGGCCGAAGACTCGATCTTCGTTACATGAAGAAAGATAGTGATCATCATTTGGAGCTTGGTTATAAGGTGGAGCGTCATCTAAAGGATGGAGACATTGTCCTCTTAAATCGTCAGCCTAGTCTCCATAAAATGTCATTCATGGGGCATAGAATCAAGATCATGCCATACTCAACTCTTCGCTTGAACTTATCTGTCACTTCACCTTACAATGCTGATTTTGATGGGGATGAAATGAACGTCCATGTTCCTCAGTCATTTGAAACTAGGGCAGAAGCTCTGGAGCTCATGATGGTGCCCAAATGCATTGTTTCCCCTCAGTCGAACCGGCCTGTAATGGGAATAGTCCAAGATACACTGTTAGGTGCTCGAAAAATCACAAAAAGGGATACCTTCATAGAGAAGGACGTTTTTATGAACATCTTGATGTGGTGGGAGGATTTTGACGGGAAAGTGCCTGCTCCTGCAATATTGAAGCCACGACCTCTTTGGACTGGGAAACAGGTTTTTAGTCTTATAATACCGAAACAGATAAATCTCCAGAGAACTTCAGCGTGGCACTCTGAATCAGAAAGTGGTAACATTACCCCTGGTGATACTTTCGTTAGAATAGAAAAGGGGGAGTTACTTTCTGGAACTCTCTGCAAAAGGGCACTTGGGACTTCTACAGGAAGTCTTATACATGTCATATGGGAAGAGGTTGGCCCAGATGCAGCCTCCAAATTCCTTAGTAATACCCAGTGGCTTGTGAATTACTGGCTGTTGCAGGATGGTTTTAGCATTGGAATTGGAGATACAATTGCTGATGCAGCAACAATGGAAAAGATCAATGTAACTATTTCCAAGGCAAAAAATGAAGTGAAAGAACTTATCAGTAAAGCCCAATCCAGGCAGCTGGAGGCTGAACCAGGACGAACTATGATGGAATCCTTTGAAAACAAAGTGAACCAGGTGTTGAATAGGGCTCGTGATGATGCTGGAAGTAGTGCCCAGAAGAGTTTATCTGAGAGTAACAATCTCAAGGCCATGGTCACAGCCGGATCGAAGGGAAGTTTTATCAATATATCGCAGATGACTGCTTGTGTGGGACAGCAAAATGTTGAGGGTAAGCGAATTCCGTATGGATTCACAGACCGGACTTTGCCCCATTTTACAAAAGACGATTATGGACCAGAAAGTCGTGGCTTTGTAGAGAATTCCTACCTGCGTGGATTAACTCCACAGGAGTTTTATTTTCATGCTATGGGTGGTAGGGAAGGCATTATTGATACTGCAGTTAAGACATCTGAGACTGGGTATATCCAGAGGAGACTGGTGAAGGCTATGGAGGATATTATGGTTAAATATGATGGGACTGTCAGAAATTCATTGGGGGATGTAATACAGTTTCTCTATGGGGAAGATGGAATGGACGCTGTTTGGTTAGAATCACAAAAGCTGGATTCTTTAAAGATGAAAAAATCAGAATTTAACAATACTTTCACTTTTGAGTTTGATGATAGAAATTGGAATCCGGACTATATGTTGCCTGAATATGTTGAGGATCTAAAAACTATTGGAGAGTTTCGCTGGGCATTGGACGCTGAAGTTTCAAAACTTGAAACTGATAGGATTCAACTTGGCACAGAGATTGCTGTCGCAGGTGATAATACTTGGCCGTTGCCTGTTAACCTGAAGAGGCTCATTTGGAATGCACAAAAAACTTTCAAAATTGACTTCCGAAGGACTTCTGATATGCAACCAATGGAAATTATAGAAGCTATTGATAATCTTCAAGAGAGGCTGAAGGTTGTTCCTGGTGATGACTTGTTAAGTGTTGAAGCTCAAAATAATGCTACACTCTTTTTCAACATTTTGCTTCGCAGCACTTTTGCTAGCAAAAGGGTGCTAAAAGAGTACAAGCTTACTCGTGAAGCATTTGAGTGGGTTATTGGGGAGGTAGAGGCACGCTTCCTACAATCACTTGTAGCACCTGGGGAAATGATTGGTATTGTTGCTGCACAATCTATTGGCGAGCCTGCCACTCAGATGACTCTCAATACCTTCCACTATGCCGGCGTAAGTGCAAAGAATGTTACTCTAGGTGTTCCAAGGTTGAAGGAAATTATTGATGTATCTAAGCGTATCAAAACACCATCTCTCTCTATCTTCTTGAAGCCTGAAGCTAATAAAACCAAAGAGAAGGCCAAGAATGTCCAGTGTGCTTTGGAATACACTAACCTTGGAAGTGTTACTCAAGCTACAGAATTGTGGTATGATCCGGACCCTATGAGCACAATAATTGAAGAGGATCTTGAATTTGTCCAGTCTTACTATGAAATGCCAGATGAAGAGGTTAGCGCTGAAAAAATATCACCTTGGTTGCTTCGCATAGAGATGAATCGTGAAATGATGGTGGATAAGAAACTGAGTATGGCTGACATTGCTGAGAAGATTAATTGTGAATATAGTGGTAAAATACAGTGTATCTTTAATGATGACAATTCTGAGAAGTTGATACTACGAATCCGTCTCATGAATGAAGAAGCTCCACATGAGGAAGTGAATGATCAATCTGAAGATGATGTTTTCCTGAAGATGATTGAGAGTAACATGCTTACAAAAATGGCTCTTCAAGGGATCCCAGAGATTAAAAAAGTGTTCATAAAGCATGGTAAAGTTAACAAGTTTGATCAGAATGAAGGGTTTATTGCGGAGCAAGAGTGGATGCTGGATACTGAAGGTGTTAATCTCTTAGCTGTCATGTGCCATGAGGATGTTGATGCCAAGAGAACAACAAGCAATGACTTGTATGAAATTATGGAAGTTCTTGGGATTGAGGCAGCTCGACGGGCATTGCTGGATGAGTTGCGTAATGTTATATCATTTGATGGATCCTATGTAAATTACCGGCACCTGGCCATTCTTTGTGAGACCATGACCTATCATGGCTACTTGATGGCCATCACTCGACATGGTATCAATCGAAAGGACACTGGTCCTATGATGCGATGCTCATTTGAACAAACAGTGGACATGCTGCTGGATGCTTCAGTTTTTGCAGAAACAGATCATTTGAGGGGTGTAACAGAAAACATAATGCTGGGCAAGCTGGCACCAATTGGCACTGGAGACTGTGCCCTGTATCTGAATGAAGAGATGTTACAAAATGCTATGGAAGTGCAGCTACCTGGTTATATGGATGGCCTTGATGTTGGCATGACACCATCCCATTCTCCATACCTTGAGAGCATACTGTCTCCTAGTTATTTGCGGAGTCCCAGTAATCCTTTTTCACCAATGTTGGATGCAGCACAGTTTTCTCCATACGTTAGGGGAATTCCCTTTTCTCCTACTTCATCTCCAGGCAACATCCCATCATCTCTTGGCTACTATCCGCCATCCTTTGTATACAGTCCCACCTCCCCATACTATAGCCCCACGTCACCAGGTTATAGTCCAACCAGTCCCCCCTATTCTCCTTCACGTCCATCTTTCACATCACCAGGTTATACTCCAAGCAGTCCTCCCTATTCTCCTTCACGTCCATCTTTCACATCACCAGGTTATAGTCCAACCAGTCCTGTCTATTCTCCTACAAGTCCATATTACTCACCGACCTCACCCGACTATAGCCCTATCTCTCCAACATCGACTCCTTATAGCCCAACTTCACCTGCATACGACCGAACACCACCGCCTTATGGCCTGACTTTACCTGCATATAGTCCCACTTCTCCTTTGTACACCCCAACGTCACCCTCCTACAGCCCGACCTCTCCAAGCTACAGCCCGACTTTCCCCAGATACACCCCCACTTCACCTTCCTACAGCCCCACATTGCCATCATACAGCCCCACATCGCCCTCCTACAGCCCCACATCGCCATCATACAGCCCCACATCCCCATCATACAGCTCTAGCTCCTCATACGATAGCCTGACATCTCCAGGTTACAACCCAACCTCTCCCAGTTATAGCCTGACATCTCTGTACAGCGCAACTTCACTAGCATATTCCCCAACATCTCCAACTTACTCTCCATCGAGCCCCACTTACAGTTCCAGCAGCCTATTCACCACCTCTGCAGTGAGCCCAGACCATTCCCCAAGTTCTCCACAGTACAGTCCAAGTGGTGAGTATTCATTGCGACATAGCGAAAAGGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0005773 GO:0005911 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030054 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0055029 GO:0055044 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_R

Protein Analysis

1695

Amino Acids

189.62

Weight (kDa)

5.55

Isoelectric Point (pI)

56.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_1	PF04997	16 - 116	1.8e-34	RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_1	PF04997	116 - 241	2e-38	RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2	PF00623	243 - 411	5.7e-69	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3	PF04983	414 - 578	1.4e-54	RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4	PF05000	605 - 709	1e-38	RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5	PF04998	716 - 1305	3.9e-105	RNA polymerase Rpb1, domain 5
RNA_pol_Rpb1_6	PF04992	782 - 966	1.1e-64	RNA polymerase Rpb1, domain 6
RNA_pol_Rpb1_7	PF04990	1051 - 1184	5.3e-50	RNA polymerase Rpb1, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35800 AT4G35800
fragaria_vesca	FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070
malus_domestica	MD02G1123200.v1.1 MD02G1123400.v1.1 MD02G1125500.v1.1 MD02G1125800.v1.1 MD15G1237200.v1.1
prunus_persica	Prupe.7G175200_v2.0.a1
pyrus_communis	pycom02g09610 pycom15g21110
rosa_chinensis	RchiOBHm_Chr2g0098321 RchiOBHm_Chr2g0098331
rosa_laevigata	RLG00000016790 RLG00000016791
rosa_multiflora	Rmu_co8358581.1_g000001 Rmu_sc0003434.1_g000008 Rmu_sc0023772.1_g000002 Rmu_sc0042863.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144060 Rroxscaffold_2G00144070
rosa_rugosa	Rorug02G0072000 Rorug02G0072000 Rorug02G0072100
rosa_samantha	Rh2AG119100 Rh2AG119200 Rh2BG122300 Rh2BG122400 Rh2CG123900 Rh2CG124000 Rh2DG123900 Rh2DG124000
rosa_wichuraiana	Rw2G009330 Rw2G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1002, 1454
AarI	CACCTGC	2 cut(s)	2567, 4600
AasI	GACNNNNNNGTC	2 cut(s)	295, 2112
Acc36I	ACCTGC	4 cut(s)	2148, 2567, 4600, 4642
AccB1I	GGYRCC	3 cut(s)	1231, 3828, 4030
AccB7I	CCANNNNNTGG	1 cut(s)	394
AccI	GTMKAC	1 cut(s)	4326
AccIII	TCCGGA	2 cut(s)	2449, 3196
AciI	CCGC	6 cut(s)	150, 890, 3629, 4189, 4313, 4613
AcoI	YGGCCR	6 cut(s)	115, 703, 940, 2591, 3834, 3876
AcsI	RAATTY	8 cut(s)	523, 1658, 2049, 2131, 2299, 2402, 3233, 4254
AcuI	CTGAAG	9 cut(s)	1470, 2541, 2630, 2741, 3117, 3513, 3530, 3675, 3951
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	7 cut(s)	20, 801, 923, 2834, 4661, 4910, 5039
AfeI	AGCGCT	1 cut(s)	3277
AfiI	CCNNNNNNNGG	8 cut(s)	146, 170, 394, 902, 1274, 1824, 3832, 4619
AflII	CTTAAG	1 cut(s)	689
AflIII	ACRYGT	1 cut(s)	1618
AjiI	CACGTC	3 cut(s)	4359, 4403, 4460
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AloI	GAACNNNNNNTCC	1 cut(s)	28
Alw21I	GWGCWC	5 cut(s)	50, 255, 1224, 1306, 3212
AlwNI	CAGNNNCTG	1 cut(s)	839
Ama87I	CYCGRG	1 cut(s)	229
Aor13HI	TCCGGA	2 cut(s)	2449, 3196
Aor51HI	AGCGCT	1 cut(s)	3277
ApoI	RAATTY	8 cut(s)	523, 1658, 2049, 2131, 2299, 2402, 3233, 4254
ArsI	GACNNNNNNTTYG	2 cut(s)	939, 971
AseI	ATTAAT	1 cut(s)	3372
Asp700I	GAANNNNTTC	1 cut(s)	2662
AspLEI	GCGC	3 cut(s)	309, 3278, 4916
AspS9I	GGNCC	8 cut(s)	173, 232, 663, 887, 1640, 2105, 3199, 3914
AsuC2I	CCSGG	4 cut(s)	75, 230, 231, 476
AsuNHI	GCTAGC	1 cut(s)	2810
AvaI	CYCGRG	1 cut(s)	229
AvaII	GGWCC	4 cut(s)	173, 2105, 3199, 3914
BaeGI	GKGCMC	5 cut(s)	230, 1236, 1591, 1927, 4057
BaeI	ACNNNNGTAYC	4 cut(s)	1524, 1557, 2196, 2229
BalI	TGGCCA	2 cut(s)	3836, 3878
BamHI	GGATCC	2 cut(s)	3555, 3809
BanI	GGYRCC	3 cut(s)	1231, 3828, 4030
BanII	GRGCYC	6 cut(s)	50, 255, 1224, 1903, 4967, 5012
BarI	GAAGNNNNNNTAC	4 cut(s)	4062, 4086, 4094, 4118
BauI	CACGAG	2 cut(s)	1902, 2844
BbsI	GAAGAC	2 cut(s)	293, 952
Bbv12I	GWGCWC	5 cut(s)	50, 255, 1224, 1306, 3212
BbvCI	CCTCAGC	1 cut(s)	68
BceAI	ACGGC	2 cut(s)	102, 2578
BciVI	GTATCC	2 cut(s)	1318, 3643
BclI	TGATCA	4 cut(s)	787, 979, 3484, 3607
BcnI	CCSGG	4 cut(s)	75, 230, 231, 476
BfaI	CTAG	7 cut(s)	1056, 1203, 2811, 3017, 4179, 4836, 4925
BfoI	RGCGCY	1 cut(s)	3279
BfrI	CTTAAG	1 cut(s)	689
BfuAI	ACCTGC	4 cut(s)	2148, 2567, 4600, 4642
BfuI	GTATCC	2 cut(s)	1318, 3643
Bme18I	GGWCC	4 cut(s)	173, 2105, 3199, 3914
BmeT110I	CYCGRG	1 cut(s)	229
BmgBI	CACGTC	3 cut(s)	4359, 4403, 4460
BmgT120I	GGNCC	8 cut(s)	173, 232, 663, 887, 1640, 2105, 3199, 3914
BmiI	GGNNCC	7 cut(s)	14, 1233, 3201, 3557, 3811, 3830, 4032
BmrI	ACTGGG	5 cut(s)	1440, 1669, 2238, 4191, 4881
BmtI	GCTAGC	1 cut(s)	2814
BmuI	ACTGGG	5 cut(s)	1440, 1669, 2238, 4191, 4881
BoxI	GACNNNNGTC	1 cut(s)	3912
BpiI	GAAGAC	2 cut(s)	293, 952
BplI	GAGNNNNNCTC	2 cut(s)	148, 180
BpmI	CTGGAG	8 cut(s)	50, 122, 1238, 1460, 1853, 4065, 4263, 4848
Bpu10I	CCTNAGC	2 cut(s)	68, 779
BpuEI	CTTGAG	5 cut(s)	175, 238, 1940, 3156, 4181
BpuMI	CCSGG	4 cut(s)	75, 230, 231, 476
BsaBI	GATNNNNATC	2 cut(s)	978, 3878
BsaHI	GRCGYC	1 cut(s)	41
BsaI	GGTCTC	2 cut(s)	463, 3842
BsaWI	WCCGGW	4 cut(s)	9, 2070, 2449, 3196
Bsc4I	CCNNNNNNNGG	8 cut(s)	146, 170, 394, 902, 1274, 1824, 3832, 4619
Bse118I	RCCGGY	4 cut(s)	139, 1263, 2990, 3825
Bse3DI	GCAATG	6 cut(s)	810, 3357, 3724, 3770, 4754, 5060
Bse8I	GATNNNNATC	2 cut(s)	978, 3878
BseAI	TCCGGA	2 cut(s)	2449, 3196
BseJI	GATNNNNATC	2 cut(s)	978, 3878
BseLI	CCNNNNNNNGG	8 cut(s)	146, 170, 394, 902, 1274, 1824, 3832, 4619
BseMI	GCAATG	6 cut(s)	810, 3357, 3724, 3770, 4754, 5060
BseRI	GAGGAG	2 cut(s)	2257, 4831
BseSI	GKGCMC	5 cut(s)	230, 1236, 1591, 1927, 4057
BseYI	CCCAGC	2 cut(s)	2505, 4018
BsgI	GTGCAG	2 cut(s)	2919, 4118
Bsh1285I	CGRYCG	1 cut(s)	4603
BshNI	GGYRCC	3 cut(s)	1231, 3828, 4030
BsiEI	CGRYCG	1 cut(s)	4603
BsiHKAI	GWGCWC	5 cut(s)	50, 255, 1224, 1306, 3212
BsiHKCI	CYCGRG	1 cut(s)	229
BslFI	GGGAC	8 cut(s)	411, 1609, 2037, 2302, 4179, 4317, 4368, 4629
BslI	CCNNNNNNNGG	8 cut(s)	146, 170, 394, 902, 1274, 1824, 3832, 4619
BsmBI	CGTCTC	1 cut(s)	3452
BsmFI	GGGAC	8 cut(s)	411, 1609, 2037, 2302, 4179, 4317, 4368, 4629
BsmI	GAATGC	1 cut(s)	2632
Bso31I	GGTCTC	2 cut(s)	463, 3842
BsoBI	CYCGRG	1 cut(s)	229
Bsp13I	TCCGGA	2 cut(s)	2449, 3196
Bsp1407I	TGTACA	2 cut(s)	4659, 4908
Bsp19I	CCATGG	2 cut(s)	803, 1962
BspACI	CCGC	6 cut(s)	150, 890, 3629, 4189, 4313, 4613
BspEI	TCCGGA	2 cut(s)	2449, 3196
BspHI	TCATGA	2 cut(s)	1224, 3450
BspLI	GGNNCC	7 cut(s)	14, 1233, 3201, 3557, 3811, 3830, 4032
BspMAI	CTGCAG	2 cut(s)	2212, 5005
BspMI	ACCTGC	4 cut(s)	2148, 2567, 4600, 4642
BspOI	GCTAGC	1 cut(s)	2814
BspQI	GCTCTTC	1 cut(s)	3552
BspT107I	GGYRCC	3 cut(s)	1231, 3828, 4030
BspTI	CTTAAG	1 cut(s)	689
BspTNI	GGTCTC	2 cut(s)	463, 3842
BsrDI	GCAATG	6 cut(s)	810, 3357, 3724, 3770, 4754, 5060
BsrFI	RCCGGY	4 cut(s)	139, 1263, 2990, 3825
BsrGI	TGTACA	2 cut(s)	4659, 4908
BssAI	RCCGGY	4 cut(s)	139, 1263, 2990, 3825
BssNAI	GTATAC	1 cut(s)	4327
BssNI	GRCGYC	1 cut(s)	41
BssSI	CACGAG	2 cut(s)	1902, 2844
BssT1I	CCWWGG	6 cut(s)	803, 1779, 1962, 3026, 3157, 3293
Bst1107I	GTATAC	1 cut(s)	4327
Bst2BI	CACGAG	2 cut(s)	1902, 2844
Bst6I	CTCTTC	9 cut(s)	725, 1119, 1626, 1925, 2606, 3216, 3261, 3552, 4065
BstACI	GRCGYC	1 cut(s)	41
BstAFI	CTTAAG	1 cut(s)	689
BstAUI	TGTACA	2 cut(s)	4659, 4908
BstDSI	CCRYGG	2 cut(s)	803, 1962
BstH2I	RGCGCY	1 cut(s)	3279
BstHHI	GCGC	3 cut(s)	309, 3278, 4916
BstMCI	CGRYCG	1 cut(s)	4603
BstMWI	GCNNNNNNNGC	9 cut(s)	69, 259, 315, 324, 1745, 2516, 3359, 3767, 4024
BstNSI	RCATGY	3 cut(s)	1622, 3532, 3955
BstPAI	GACNNNNGTC	1 cut(s)	3912
BstSLI	GKGCMC	5 cut(s)	230, 1236, 1591, 1927, 4057
BstV2I	GAAGAC	2 cut(s)	293, 952
BstX2I	RGATCY	5 cut(s)	769, 2479, 3226, 3555, 3809
BstXI	CCANNNNNNTGG	1 cut(s)	1831
BstYI	RGATCY	5 cut(s)	769, 2479, 3226, 3555, 3809
BstZ17I	GTATAC	1 cut(s)	4327
BsuI	GTATCC	2 cut(s)	1318, 3643
BtgI	CCRYGG	2 cut(s)	803, 1962
BtgZI	GCGATG	3 cut(s)	3940, 4761, 4782
BtrI	CACGTC	3 cut(s)	4359, 4403, 4460
BtsI	GCAGTG	1 cut(s)	5010
BtsIMutI	CAGTG	8 cut(s)	1292, 1682, 3140, 3404, 3909, 3951, 4041, 5010
BveI	ACCTGC	4 cut(s)	2148, 2567, 4600, 4642
CaiI	CAGNNNCTG	1 cut(s)	839
CciI	TCATGA	2 cut(s)	1224, 3450
CfoI	GCGC	3 cut(s)	309, 3278, 4916
Cfr10I	RCCGGY	4 cut(s)	139, 1263, 2990, 3825
Cfr13I	GGNCC	8 cut(s)	173, 232, 663, 887, 1640, 2105, 3199, 3914
Cfr9I	CCCGGG	1 cut(s)	229
CseI	GACGC	4 cut(s)	49, 1001, 2357, 2525
CsiI	ACCWGGT	5 cut(s)	1884, 4105, 4363, 4420, 4477
Csp6I	GTAC	7 cut(s)	19, 800, 922, 2833, 4660, 4909, 5038
CspCI	CAANNNNNGTGG	2 cut(s)	592, 627
CviQI	GTAC	7 cut(s)	19, 800, 922, 2833, 4660, 4909, 5038
DraI	TTTAAA	1 cut(s)	2385
DrdI	GACNNNNNNGTC	2 cut(s)	295, 2112
DseDI	GACNNNNNNGTC	2 cut(s)	295, 2112
EaeI	YGGCCR	6 cut(s)	115, 703, 940, 2591, 3834, 3876
Eam1104I	CTCTTC	9 cut(s)	725, 1119, 1626, 1925, 2606, 3216, 3261, 3552, 4065
EarI	CTCTTC	9 cut(s)	725, 1119, 1626, 1925, 2606, 3216, 3261, 3552, 4065
EciI	GGCGGA	1 cut(s)	4302
Ecl136II	GAGCTC	3 cut(s)	48, 253, 1222
Eco130I	CCWWGG	6 cut(s)	803, 1779, 1962, 3026, 3157, 3293
Eco24I	GRGCYC	6 cut(s)	50, 255, 1224, 1903, 4967, 5012
Eco31I	GGTCTC	2 cut(s)	463, 3842
Eco47I	GGWCC	4 cut(s)	173, 2105, 3199, 3914
Eco47III	AGCGCT	1 cut(s)	3277
Eco53kI	GAGCTC	3 cut(s)	48, 253, 1222
Eco57I	CTGAAG	9 cut(s)	1470, 2541, 2630, 2741, 3117, 3513, 3530, 3675, 3951
Eco88I	CYCGRG	1 cut(s)	229
EcoICRI	GAGCTC	3 cut(s)	48, 253, 1222
EcoRI	GAATTC	3 cut(s)	2049, 2131, 4254
EcoT14I	CCWWGG	6 cut(s)	803, 1779, 1962, 3026, 3157, 3293
EcoT22I	ATGCAT	1 cut(s)	1244
EcoT38I	GRGCYC	6 cut(s)	50, 255, 1224, 1903, 4967, 5012
ErhI	CCWWGG	6 cut(s)	803, 1779, 1962, 3026, 3157, 3293
Esp3I	CGTCTC	1 cut(s)	3452
FalI	AAGNNNNNCTT	2 cut(s)	3213, 3245
FaqI	GGGAC	8 cut(s)	411, 1609, 2037, 2302, 4179, 4317, 4368, 4629
FauNDI	CATATG	1 cut(s)	1625
FbaI	TGATCA	4 cut(s)	787, 979, 3484, 3607
FblI	GTMKAC	1 cut(s)	4326
FriOI	GRGCYC	6 cut(s)	50, 255, 1224, 1903, 4967, 5012
FspBI	CTAG	7 cut(s)	1056, 1203, 2811, 3017, 4179, 4836, 4925
GlaI	GCGC	3 cut(s)	308, 3277, 4915
GsaI	CCCAGC	2 cut(s)	2509, 4022
GsuI	CTGGAG	8 cut(s)	50, 122, 1238, 1460, 1853, 4065, 4263, 4848
HaeII	RGCGCY	1 cut(s)	3279
HgaI	GACGC	4 cut(s)	49, 1001, 2357, 2525
HhaI	GCGC	3 cut(s)	309, 3278, 4916
Hin1I	GRCGYC	1 cut(s)	41
Hin6I	GCGC	3 cut(s)	307, 3276, 4914
HinP1I	GCGC	3 cut(s)	307, 3276, 4914
HincII	GTYRAC	2 cut(s)	2605, 3598
HindII	GTYRAC	2 cut(s)	2605, 3598
HindIII	AAGCTT	1 cut(s)	2837
HpaI	GTTAAC	2 cut(s)	2605, 3598
Hpy166II	GTNNAC	7 cut(s)	576, 1882, 2605, 3598, 3949, 4327, 4662
Hpy8I	GTNNAC	7 cut(s)	576, 1882, 2605, 3598, 3949, 4327, 4662
Hpy99I	CGWCG	2 cut(s)	43, 3768
HpyCH4IV	ACGT	7 cut(s)	1176, 1344, 4245, 4358, 4402, 4459, 4670
HpyF10VI	GCNNNNNNNGC	9 cut(s)	69, 259, 315, 324, 1745, 2516, 3359, 3767, 4024
HpySE526I	ACGT	7 cut(s)	1176, 1344, 4245, 4358, 4402, 4459, 4670
Hsp92I	GRCGYC	1 cut(s)	41
HspAI	GCGC	3 cut(s)	307, 3276, 4914
Kpn2I	TCCGGA	2 cut(s)	2449, 3196
KroI	GCCGGC	1 cut(s)	2990
KroNI	GCCGGC	1 cut(s)	2992
Ksp22I	TGATCA	4 cut(s)	787, 979, 3484, 3607
KspAI	GTTAAC	2 cut(s)	2605, 3598
LguI	GCTCTTC	1 cut(s)	3552
MabI	ACCWGGT	5 cut(s)	1884, 4105, 4363, 4420, 4477
MaeI	CTAG	7 cut(s)	1056, 1203, 2811, 3017, 4179, 4836, 4925
MaeII	ACGT	7 cut(s)	1176, 1344, 4245, 4358, 4402, 4459, 4670
MfeI	CAATTG	3 cut(s)	322, 1734, 4035
MflI	RGATCY	5 cut(s)	769, 2479, 3226, 3555, 3809
MlsI	TGGCCA	2 cut(s)	3836, 3878
MluNI	TGGCCA	2 cut(s)	3836, 3878
MlyI	GAGTC	7 cut(s)	283, 744, 838, 942, 2962, 4201, 4564
MmeI	TCCRAC	5 cut(s)	4200, 4400, 4514, 4586, 4970
Mox20I	TGGCCA	2 cut(s)	3836, 3878
Mph1103I	ATGCAT	1 cut(s)	1244
MroI	TCCGGA	2 cut(s)	2449, 3196
MroNI	GCCGGC	1 cut(s)	2990
MroXI	GAANNNNTTC	1 cut(s)	2662
MscI	TGGCCA	2 cut(s)	3836, 3878
MslI	CAYNNNNRTG	7 cut(s)	815, 1229, 1361, 2857, 2963, 3311, 3690
Msp20I	TGGCCA	2 cut(s)	3836, 3878
MspA1I	CMGCKG	3 cut(s)	464, 554, 1831
MspCI	CTTAAG	1 cut(s)	689
MunI	CAATTG	3 cut(s)	322, 1734, 4035
Mva1269I	GAATGC	1 cut(s)	2632
MwoI	GCNNNNNNNGC	9 cut(s)	69, 259, 315, 324, 1745, 2516, 3359, 3767, 4024
NaeI	GCCGGC	1 cut(s)	2992
NciI	CCSGG	4 cut(s)	75, 230, 231, 476
NcoI	CCATGG	2 cut(s)	803, 1962
NdeI	CATATG	1 cut(s)	1625
NgoMIV	GCCGGC	1 cut(s)	2990
NheI	GCTAGC	1 cut(s)	2810
NlaIV	GGNNCC	7 cut(s)	14, 1233, 3201, 3557, 3811, 3830, 4032
NmeAIII	GCCGAG	2 cut(s)	69, 145
NmuCI	GTSAC	7 cut(s)	158, 242, 841, 1132, 1966, 4359, 4671
NsiI	ATGCAT	1 cut(s)	1244
NspI	RCATGY	3 cut(s)	1622, 3532, 3955
PagI	TCATGA	2 cut(s)	1224, 3450
PaqCI	CACCTGC	2 cut(s)	2567, 4600
PciI	ACATGT	1 cut(s)	1618
PciSI	GCTCTTC	1 cut(s)	3552
PctI	GAATGC	1 cut(s)	2632
PdiI	GCCGGC	1 cut(s)	2992
PdmI	GAANNNNTTC	1 cut(s)	2662
PflFI	GACNNNGTC	1 cut(s)	1034
PflMI	CCANNNNNTGG	1 cut(s)	394
PleI	GAGTC	7 cut(s)	283, 743, 838, 942, 2962, 4200, 4564
PpsI	GAGTC	7 cut(s)	283, 743, 838, 942, 2962, 4200, 4564
PscI	ACATGT	1 cut(s)	1618
PshAI	GACNNNNGTC	1 cut(s)	3912
PshBI	ATTAAT	1 cut(s)	3372
PsiI	TTATAA	2 cut(s)	1002, 1454
Psp124BI	GAGCTC	3 cut(s)	50, 255, 1224
PspFI	CCCAGC	2 cut(s)	2505, 4018
PspN4I	GGNNCC	7 cut(s)	14, 1233, 3201, 3557, 3811, 3830, 4032
PspPI	GGNCC	8 cut(s)	173, 232, 663, 887, 1640, 2105, 3199, 3914
PstI	CTGCAG	2 cut(s)	2212, 5005
PstNI	CAGNNNCTG	1 cut(s)	839
PsuI	RGATCY	5 cut(s)	769, 2479, 3226, 3555, 3809
PsyI	GACNNNGTC	1 cut(s)	1034
PvuII	CAGCTG	3 cut(s)	464, 554, 1831
RsaI	GTAC	7 cut(s)	20, 801, 923, 2834, 4661, 4910, 5039
RsaNI	GTAC	7 cut(s)	19, 800, 922, 2833, 4660, 4909, 5038
RseI	CAYNNNNRTG	7 cut(s)	815, 1229, 1361, 2857, 2963, 3311, 3690
SacI	GAGCTC	3 cut(s)	50, 255, 1224
SapI	GCTCTTC	1 cut(s)	3552
Sau96I	GGNCC	8 cut(s)	173, 232, 663, 887, 1640, 2105, 3199, 3914
SchI	GAGTC	7 cut(s)	283, 744, 838, 942, 2962, 4201, 4564
SexAI	ACCWGGT	5 cut(s)	1884, 4105, 4363, 4420, 4477
SinI	GGWCC	4 cut(s)	173, 2105, 3199, 3914
SmaI	CCCGGG	1 cut(s)	231
SmiMI	CAYNNNNRTG	7 cut(s)	815, 1229, 1361, 2857, 2963, 3311, 3690
SmlI	CTYRAG	6 cut(s)	154, 217, 689, 1955, 3171, 4160
SmoI	CTYRAG	6 cut(s)	154, 217, 689, 1955, 3171, 4160
SrfI	GCCCGGGC	1 cut(s)	231
SsiI	CCGC	6 cut(s)	150, 890, 3629, 4189, 4313, 4613
SspI	AATATT	1 cut(s)	1407
SspMI	CTAG	7 cut(s)	1056, 1203, 2811, 3017, 4179, 4836, 4925
SstI	GAGCTC	3 cut(s)	50, 255, 1224
StyI	CCWWGG	6 cut(s)	803, 1779, 1962, 3026, 3157, 3293
TaiI	ACGT	7 cut(s)	1179, 1347, 4248, 4361, 4405, 4462, 4673
TaqII	GACCGA	2 cut(s)	230, 4617
TatI	WGTACW	5 cut(s)	921, 2832, 4659, 4908, 5037
TauI	GCSGC	2 cut(s)	153, 892
TscAI	CASTG	8 cut(s)	1299, 1682, 3140, 3404, 3916, 3951, 4048, 5010
TseFI	GTSAC	7 cut(s)	158, 242, 841, 1132, 1966, 4359, 4671
Tsp45I	GTSAC	7 cut(s)	158, 242, 841, 1132, 1966, 4359, 4671
TspGWI	ACGGA	4 cut(s)	40, 766, 2043, 3434
TspMI	CCCGGG	1 cut(s)	229
TspRI	CASTG	8 cut(s)	1299, 1682, 3140, 3404, 3916, 3951, 4048, 5010
Tth111I	GACNNNGTC	1 cut(s)	1034
Van91I	CCANNNNNTGG	1 cut(s)	394
Vha464I	CTTAAG	1 cut(s)	689
VpaK11BI	GGWCC	4 cut(s)	173, 2105, 3199, 3914
VspI	ATTAAT	1 cut(s)	3372
XapI	RAATTY	8 cut(s)	523, 1658, 2049, 2131, 2299, 2402, 3233, 4254
XceI	RCATGY	3 cut(s)	1622, 3532, 3955
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1422
XmaI	CCCGGG	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	4326
XmnI	GAANNNNTTC	1 cut(s)	2662
XspI	CTAG	7 cut(s)	1056, 1203, 2811, 3017, 4179, 4836, 4925
Zsp2I	ATGCAT	1 cut(s)	1244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.