Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003735

Physical Location & Seq

Genomic Coordinates Forward (+)

18182315 .. 18184340

Gene Structure 2026 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGTGTCTCGTTATCCAATTGGTGGTTTCGCTTTCCATAGGCACCAGTTTCATCTACTTCTACGACATTTGGGAATCTTCTCTCAAAAAGAACGTAACTTTCTTCAAGTTGACGATGAGGGGGGTTGGATAGTCGTCCCATTAACTACAATAATCGTTTTCACTAAGACTCTTATGATGGCCGAGTGTTGCGAGGAGTGTTGTGAGCAAATGGAAGAAGACGCTTATTCGGAATGGCTCCGTGAAGCCAATGATGGAGTCAATGCTTCTCAAATGCATAATGGAACATCAGACGCCATGGGATATTTCTTAGGAGAGGTCATGTTTCCATATCAAGCTGATTCAGATTTTGAGCTCAGCTTATCAGTTGGAGACTATGTTGTTATCAGAGAGGTAGTGAGTAGCGTGTGGGCAGAAGGAGAATGTAAAGGCAACGCGGGTTGGTTTACTTACATCTACATCGAAAGAAGGGATCGTGTCTTCGCAACTAAGGTCATCGAGGTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007049 GO:0008150 GO:0009504 GO:0009832 GO:0009920 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0032506 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051179 GO:0051234 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0072583 GO:0097708 GO:0098657 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

BAR SH3_9

Protein Analysis

169

Amino Acids

19.45

Weight (kDa)

4.67

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_9	PF14604	107 - 149	5.8e-06	Variant SH3 domain
SH3_1	PF00018	107 - 149	6.9e-06	SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39020
fragaria_vesca	FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_3g27182
malus_domestica	MD05G1056500.v1.1 MD10G1064500.v1.1
prunus_persica	Prupe.8G086700_v2.0.a1 Prupe.8G086700_v2.0.a1
pyrus_communis	pycom05g04810 pycom10g05040
rosa_chinensis	RchiOBHm_Chr2g0102681 RchiOBHm_Chr6g0267341
rosa_laevigata	RLG00000014014
rosa_multiflora	Rmu_co8352115.1_g000001 Rmu_co8477675.1_g000001 Rmu_sc0000693.1_g000022 Rmu_sc0002077.1_g000001 Rmu_sc0002639.1_g000012 Rmu_sc0008034.1_g000007 Rmu_sc0028141.1_g000001 Rmu_sc0040922.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266630 Rroxscaffold_7G00200930
rosa_rugosa	Rorug02G0109200 Rorug06G0031400
rosa_samantha	Rh2CG163000 Rh6AG153300 Rh6BG153000 Rh6CG149200 Rh6DG137400
rosa_wichuraiana	Rw6G013190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	42
AccB7I	CCANNNNNTGG	1 cut(s)	23
AccII	CGCG	1 cut(s)	437
AciI	CCGC	1 cut(s)	437
AclWI	GGATC	1 cut(s)	480
AcoI	YGGCCR	1 cut(s)	180
AcyI	GRCGYC	1 cut(s)	294
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	107
AluBI	AGCT	3 cut(s)	338, 355, 360
AluI	AGCT	3 cut(s)	338, 355, 360
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	2 cut(s)	12, 366
AlwI	GGATC	1 cut(s)	480
AoxI	GGCC	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	357
BbsI	GAAGAC	3 cut(s)	225, 472, 496
Bbv12I	GWGCWC	1 cut(s)	357
BccI	CCATC	2 cut(s)	172, 248
BcoDI	GTCTC	2 cut(s)	12, 366
BfaI	CTAG	1 cut(s)	508
BlpI	GCTNAGC	1 cut(s)	356
BmiI	GGNNCC	2 cut(s)	44, 239
BpiI	GAAGAC	3 cut(s)	225, 472, 496
Bpu1102I	GCTNAGC	1 cut(s)	356
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	363, 393
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	370
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	209
Bsh1236I	CGCG	1 cut(s)	437
BshFI	GGCC	1 cut(s)	182
BshNI	GGYRCC	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	357
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	2 cut(s)	12, 366
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	1 cut(s)	472
Bsp1720I	GCTNAGC	1 cut(s)	356
Bsp19I	CCATGG	1 cut(s)	297
BspACI	CCGC	1 cut(s)	437
BspANI	GGCC	1 cut(s)	182
BspCNI	CTCAG	1 cut(s)	369
BspFNI	CGCG	1 cut(s)	437
BspLI	GGNNCC	2 cut(s)	44, 239
BspPI	GGATC	1 cut(s)	480
BspT107I	GGYRCC	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	1 cut(s)	472
BssNI	GRCGYC	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	297
BstACI	GRCGYC	1 cut(s)	294
BstDEI	CTNAG	4 cut(s)	165, 310, 356, 489
BstDSI	CCRYGG	1 cut(s)	297
BstFNI	CGCG	1 cut(s)	437
BstKTI	GATC	1 cut(s)	475
BstMAI	GTCTC	2 cut(s)	12, 366
BstMBI	GATC	1 cut(s)	472
BstUI	CGCG	1 cut(s)	437
BstV2I	GAAGAC	3 cut(s)	225, 472, 496
BsuRI	GGCC	1 cut(s)	182
BtgI	CCRYGG	1 cut(s)	297
CseI	GACGC	2 cut(s)	230, 302
CviAII	CATG	2 cut(s)	298, 322
CviJI	RGCY	6 cut(s)	182, 238, 248, 338, 355, 360
CviKI_1	RGCY	6 cut(s)	182, 238, 248, 338, 355, 360
DdeI	CTNAG	4 cut(s)	165, 310, 356, 489
DpnI	GATC	1 cut(s)	474
DpnII	GATC	1 cut(s)	472
EaeI	YGGCCR	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	357
Eco53kI	GAGCTC	1 cut(s)	355
EcoICRI	GAGCTC	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	297
EcoT22I	ATGCAT	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	2 cut(s)	301, 325
FaiI	YATR	7 cut(s)	39, 176, 279, 299, 323, 331, 378
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	2 cut(s)	297, 321
FauI	CCCGC	1 cut(s)	430
FriOI	GRGCYC	1 cut(s)	357
FspBI	CTAG	1 cut(s)	508
HaeIII	GGCC	1 cut(s)	182
HgaI	GACGC	2 cut(s)	230, 302
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	2 cut(s)	301, 325
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	4 cut(s)	75, 169, 258, 341
Hpy166II	GTNNAC	2 cut(s)	112, 447
Hpy188I	TCNGA	4 cut(s)	232, 292, 346, 389
Hpy8I	GTNNAC	2 cut(s)	112, 447
HpyAV	CCTTC	2 cut(s)	410, 462
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	1 cut(s)	277
HpyF3I	CTNAG	4 cut(s)	165, 310, 356, 489
HpySE526I	ACGT	1 cut(s)	94
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	2 cut(s)	301, 325
Kzo9I	GATC	1 cut(s)	472
LmnI	GCTCC	1 cut(s)	243
LpnPI	CCDG	1 cut(s)	59
MaeI	CTAG	1 cut(s)	508
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	1 cut(s)	474
MboI	GATC	1 cut(s)	472
MboII	GAAGA	6 cut(s)	70, 95, 227, 230, 472, 496
MfeI	CAATTG	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	1 cut(s)	18
MlyI	GAGTC	2 cut(s)	163, 267
MmeI	TCCRAC	2 cut(s)	107, 349
MnlI	CCTC	5 cut(s)	112, 187, 310, 385, 493
Mph1103I	ATGCAT	1 cut(s)	279
MseI	TTAA	1 cut(s)	143
MunI	CAATTG	1 cut(s)	18
MvnI	CGCG	1 cut(s)	437
NcoI	CCATGG	1 cut(s)	297
NdeII	GATC	1 cut(s)	472
NlaIII	CATG	2 cut(s)	301, 325
NlaIV	GGNNCC	2 cut(s)	44, 239
NmeAIII	GCCGAG	1 cut(s)	208
NsiI	ATGCAT	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	75, 341
PflMI	CCANNNNNTGG	1 cut(s)	23
PleI	GAGTC	2 cut(s)	163, 266
PpsI	GAGTC	2 cut(s)	163, 266
Psp124BI	GAGCTC	1 cut(s)	357
PspN4I	GGNNCC	2 cut(s)	44, 239
SacI	GAGCTC	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	143
Sau3AI	GATC	1 cut(s)	472
SchI	GAGTC	2 cut(s)	163, 267
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	8 cut(s)	97, 321, 340, 357, 362, 396, 495, 504
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	1 cut(s)	437
SspMI	CTAG	1 cut(s)	508
SstI	GAGCTC	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	297
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	2 cut(s)	462, 498
TasI	AATT	1 cut(s)	18
TfiI	GAWTC	2 cut(s)	75, 341
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	41
TspGWI	ACGGA	1 cut(s)	230
Van91I	CCANNNNNTGG	1 cut(s)	23
XspI	CTAG	1 cut(s)	508
Zsp2I	ATGCAT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.