Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001461

Physical Location & Seq

Genomic Coordinates Forward (+)

9402315 .. 9410560

Gene Structure 8246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0109200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3768 bp

ATGAGGAGCTTGAAGCGGTTGCCGGAGGCAGTTCGGAGCTCGATTCGGTCTGGGGTGATTCTGTATGACGTGGCTAGGGTTGTGGAGGAGCTCGTCTTTAATAGCTTGGACGCTGGCGCAAGAAAGGTGTCAGTTTTCGTAGGAATTGGGACTTGTTATGTGAAAGTAGTTGATGATGGATGTGGGATTACTCGTGATGGATTGGTGTTGTTGGGAGAAAGATATGCCACGTCAAAGTTTGAACAATTTACTGAGCCTGATGCTGCAAGTGTGAGCTTTGGTTCCAGAGGGGAAGCACTGGCTTCGATTTCTGATGTGGCACTGCTTGAAGTTGTAACGAAAGCTTCTGGGAGGCCAAATGGGTATCGCAAAGTGATGAAGGGCTTCAAATGTTTGTATCTTGGGGTAGATGATGATAGGAAGGATGTCGGCACAACAGTTGTTGTTCGTGATTTGTTTTACAATCAACCAGTTCGGAGGAAGTGCATGCGATCCAGCCCGAAGAAGGTATTGGACACTGTCAAGAAATGTGTACACAGGATCGCACTGGTGCACTCAATGGTTTCCTTCAAAGTTGTTGATGTGGAGAGTGAGGATGAGCTTCTTCGTACCATTCCTTCTCCTTCTCCCATGACATTATTGGAAAGTGCTTTTGGGAGCGAGGTCTCTGATGCACTTCACGAATTGAACATAAGTGATGGCAAATTAGAGCTTTCTGGATACATATCTACTCCTTGCAATAGTCTCGCCATTAAGGCCATCCAATATTTCTATATTAATTCACGGTTCATTTGCAAAGGACCAATTCACAAATTGCTTAATCAATTGGCCTCTAGCTTCGAATGCTGGGACCCAGGGACAGCTGTTGTTGGATCCCGCAACAGGAAGAGAAGTAGACCTCAAGCATTCCCAGTTTATGTCTTGAATTTAAGTTGTCCCCAATCATTCTATGATTTAAACTTTGAACCATCGAAGACATATGCTGAGTTCAAGGATTGGGGTCCTGTACTCAACTTTATTGATAAGGCCATTCAAAGCTTCTGGAAGGAAAAGATATCCTATGTAGAATCTGTTTGTCATGGAGCTGATATACGAAGAGAAGGTCAAATGTGGGAGGAACGTGACAACACTGTATCTGTAGATGAAAGTTTGCTGGATGTAGATTTGTCAGAAATGTCTCCAATAAGGAAAAAGAGGAGCAGGATACAAGATCTTGAGACTTCTCCTGACATTATGAAGATTCTAAGTAAAGAGGGCAGCGATGTATCTCAGAGGAAATATATCAGAATTCCATTTGACTACTTGCATGAAAATACTGATGATGTCAAAGGCTTCAAAGATCGAGATAGTGAGATTGATTTTCGTCATGATACTGACTATTCATTTCAACCACGGGATCAGAATCTTGCTAAATGTATGGTCGCAACAACTCTGAAGAGGGAAAATCATAGTTGGATGTCTGATATCAATTTTTCACCTGATGAAGATTATATGATGGATAGTGGCTACTCTGCTGCCAAAAGATCCAGTAATTTGGAAGATAATATGTTTACCTCAGCATGGCAAGATCAGCCCTTTAAACTCTGTGCTAGTGTTAGCAAGGGTTCAGCAGATACTGGAGTATCACATCATGATTTCAGTAGCAATGTAGAGTTCACCTGTGATTTAAGACAACCTTTCCTCAATAGTTGTTCCTCCCGAGGAAGGCTTCCATCTGAGAGGGATTTGCTTACAGAAAGTGGGATTAAATGTCAAAATGATTACTTTGGGAGCAAGAGAATGCAGGATGGGTCTTACAACACTGTAGACTTTTCAGAAATTGATGGCGGCAGCAAGAGAATTCGGAGTGGTTCTTATAACAGTGTAGAAGTTCCAGATATCTCGTCAATGACTTCATCCCCAGGGATGGTTTCTAGTGCTCAGCCCTATCCCAGAGTTAGATCAAATTTTGACCCGTTTGCAGAGTTTGACCCTCTGTCAAGTGCTAGTTTGAATTCAATTCCATCCTGTAAGGGCTGTTTAGATGAGGCAAGTTTAGACATGAGTGAAGAGTATATTGGTTCGTGCAATCAGACCTTAAAAACTGAATGGTACTCTGTGACATCCAATCCGTTATCCCAAAGTACCTATATGGATTTTGAACCTTTCTCTAATGAAGATTCAGTTGAAGGGCATTACAGATATAAATATGATAAGAGAAATACTGACAAATATTTTGTTGATGCTGAAGAATTTGAATGCAGCTTTGGATTGGATATAGTGTCAAAGATCAAAGAACACTGCATTACAGATATAGACTGTGGACTAGGTTATAATGACAATGCTGGTTCTAGAAAATTCCTTCACCAAGACAATATAGATAGAGAGTTTTCTACTGGACGCCGAGGTAAATTAGCTTATGAGACAGATTGGTTAAGTTGGCATTCACGCAGCAAAGATAACATTTGTATTGACATGCATAATAGACATGAGGAGCAGTCAAAATATCAGGATTGTCTCAAGAGTCGTGTTTTAAACAGAAGATTGATACGAAGCCACTCAGCTCCACCATTTCCTAGAAGCAAGAAGAAGTACTTCACTTTAAATCATCCTGCGACAACAGCAGGCAAACATGATGCACAAACCTTCCATGATTCAGCTACTTATCCAGAAGCTGGCACAGTGAAGGATCTCTGTCAACCTCCTAATGGTAGTCATCAAAATTTGAACACAACTTCTGTGGAGGATTTATTGTTAGACACCAGACCAGATATTAACGCTGGTGCAAGCAAGATGCAAAAATTGGAAATGTTTGAACAATCTAAAAGGTCTGAGGTTCAAGCCACAGCTCCAATTAAGGAAATTATATTCATGAATCAAGATTCGCTGAATTGCGGGACCAAATGGCGGAATTGTTGTCCCCAAATTACAAGCACAAGTAAAATGCACGGTGTTCAAGATGGAAATGATATACTTGACATATCTTCCGGATTCTTGCATCTTGCTGCTGACTCATTAGTTCCTGAATCTCTCAATAAGAACTGTCTCAAGCATTGCAGAGTTCTTCAGCAGGTGGATAAGAAATTTATTCCAGTCATGGCCGGCCAAACACTTGCTGTTATTGACCAGCATGCTGCAGATGAAAGGATCCGATTGGAGGAGCTGCGTCACAAGGTTTTGTCTGGAGATGGAGAAGCAAAGACCGTTACTTTTCTGGATTTTGAACAAGAGCTGGTGCTGCCAGAGATTGGTTACCAGTTACTGCATAATTATGCTAAAACAATAGAAGAGTGGGGTTGGCGCTGCAACATACGTGCTCAAGATTCAGGGTCTTTCAAGAGGAATTTGAATATCCTTCACAGGCAGCCAACCGTCATCACACTTATTGCGGTTCCCTGCATCTTAGGTGTCAATTTATCTGATGTAGATCTTATGGAATTTCTTCAGCAGCTCTCTGATACAGATGGATCATCAACAATGCCACCATCTGTTCTTCGAATCCTAAATTCTAAAGCATGTAGAGGTGCAATTATGTTTGGGGATTCCTTGCTACCTTCAGAGTGTTCCCTCATCGTTGATGAGCTAAAGCAGACCTCATTGTGTTTCCAATGTGCTCATGGTCGACCAACAACTGCCCCACTAGTAAATTTGGAAGCGTTGCACAAGCAAATAGCTAAGATTGCATCTTTGAATCAGAACAATGGTGCAGATCAGGTGTGGCATGGGTTACATCGACATGAGCTTAGTCTTGCACGTGCAGAACAACGTTTAAACTCGGCTAGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

1255

Amino Acids

141.24

Weight (kDa)

5.97

Isoelectric Point (pI)

51.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	22 - 120	2.7e-07	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DNA_mis_repair	PF01119	215 - 347	3.2e-12	DNA mismatch repair protein, C-terminal domain
MutL_C	PF08676	1015 - 1176	3.6e-09	MutL C terminal dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001461)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14230 FvH4_1g14282
prunus_persica	Prupe.7G151400_v2.0.a1 Prupe.7G151400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0102471 RchiOBHm_Chr2g0102541 RchiOBHm_Chr2g0102571 RchiOBHm_Chr2g0102911
rosa_laevigata	RLG00000017150 RLG00000017151 RLG00000017153 RLG00000017166 RLG00000017169 RLG00000017171
rosa_multiflora	Rmu_co8249631.1_g000001 Rmu_sc0006537.1_g000001 Rmu_sc0008034.1_g000008 Rmu_sc0033667.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140380 Rroxscaffold_2G00140480 Rroxscaffold_2G00140490 Rroxscaffold_4G00310880 Rroxscaffold_4G00310920
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108700 Rorug02G0109200
rosa_samantha	Rh1AG182000 Rh1CG168800 Rh2AG155700 Rh2AG156200 Rh2AG156600 Rh2AG156800 Rh2BG162000 Rh2BG162500 Rh2BG162600 Rh2BG162800 Rh2BG163000 Rh2BG163100 Rh2CG161200 Rh2CG161500 Rh2CG161600 Rh2CG161900 Rh2CG163100 Rh2CG163400 Rh2CG165200 Rh2DG161200 Rh2DG161700 Rh2DG161900
rosa_wichuraiana	Rw2G012140 Rw2G012150 Rw2G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1857, 2313
AarI	CACCTGC	1 cut(s)	3040
Acc36I	ACCTGC	1 cut(s)	3040
AccB7I	CCANNNNNTGG	2 cut(s)	2654, 3227
AccI	GTMKAC	3 cut(s)	895, 1806, 3601
AccIII	TCCGGA	1 cut(s)	2966
AciI	CCGC	6 cut(s)	16, 877, 1827, 2874, 2887, 3368
AclI	AACGTT	1 cut(s)	3745
AcoI	YGGCCR	2 cut(s)	3078, 3082
AcuI	CTGAAG	5 cut(s)	1454, 2247, 3029, 3407, 3519
AcvI	CACGTG	1 cut(s)	3734
AcyI	GRCGYC	1 cut(s)	2380
AfaI	GTAC	6 cut(s)	534, 610, 1008, 2093, 2125, 2573
AhdI	GACNNNNNGTC	1 cut(s)	1975
AhlI	ACTAGT	1 cut(s)	3619
AjiI	CACGTC	2 cut(s)	70, 231
AjnI	CCWGG	2 cut(s)	853, 1900
AjuI	GAANNNNNNNTTGG	8 cut(s)	494, 526, 636, 668, 2040, 2072, 2229, 2261
Alw21I	GWGCWC	6 cut(s)	41, 93, 555, 1921, 3298, 3595
Alw26I	GTCTC	7 cut(s)	670, 749, 1182, 1211, 2396, 2501, 3029
Alw44I	GTGCAC	1 cut(s)	551
AlwNI	CAGNNNCTG	3 cut(s)	1616, 2654, 3241
Ama87I	CYCGRG	1 cut(s)	1698
Aor13HI	TCCGGA	1 cut(s)	2966
AoxI	GGCC	6 cut(s)	353, 756, 828, 1026, 3078, 3082
ApaLI	GTGCAC	1 cut(s)	551
ArsI	GACNNNNNNTTYG	4 cut(s)	1087, 1119, 2198, 2230
AseI	ATTAAT	1 cut(s)	777
Asp700I	GAANNNNTTC	3 cut(s)	383, 2573, 3420
AspLEI	GCGC	2 cut(s)	119, 3282
AspS9I	GGNCC	4 cut(s)	800, 850, 1001, 2877
AsuHPI	GGTGA	4 cut(s)	67, 1467, 1648, 2336
AsuII	TTCGAA	2 cut(s)	840, 3475
AvaI	CYCGRG	1 cut(s)	1698
AvaII	GGWCC	4 cut(s)	800, 850, 1001, 2877
BaeGI	GKGCMC	1 cut(s)	555
BaeI	ACNNNNGTAYC	4 cut(s)	1605, 1605, 1638, 1638
BamHI	GGATCC	2 cut(s)	872, 3126
BanII	GRGCYC	2 cut(s)	41, 93
BarI	GAAGNNNNNNTAC	2 cut(s)	601, 633
BauI	CACGAG	1 cut(s)	192
BbrPI	CACGTG	1 cut(s)	3734
BbsI	GAAGAC	1 cut(s)	980
Bbv12I	GWGCWC	6 cut(s)	41, 93, 555, 1921, 3298, 3595
BbvCI	CCTCAGC	1 cut(s)	1555
BcgI	CGANNNNNNTGC	4 cut(s)	285, 319, 727, 761
BciT130I	CCWGG	2 cut(s)	855, 1902
BciVI	GTATCC	2 cut(s)	713, 1197
BcoDI	GTCTC	7 cut(s)	670, 749, 1182, 1211, 2396, 2501, 3029
BcuI	ACTAGT	1 cut(s)	3619
BfmI	CTRYAG	3 cut(s)	1137, 1803, 3114
BfoI	RGCGCY	1 cut(s)	3283
BfuAI	ACCTGC	1 cut(s)	3040
BfuI	GTATCC	2 cut(s)	713, 1197
BglI	GCCNNNNNGGC	1 cut(s)	755
BglII	AGATCT	2 cut(s)	1210, 3406
BlpI	GCTNAGC	1 cut(s)	1920
BmcAI	AGTACT	1 cut(s)	2573
Bme1390I	CCNGG	2 cut(s)	855, 1902
Bme18I	GGWCC	4 cut(s)	800, 850, 1001, 2877
BmeRI	GACNNNNNGTC	1 cut(s)	1975
BmeT110I	CYCGRG	1 cut(s)	1698
BmgBI	CACGTC	2 cut(s)	70, 231
BmgT120I	GGNCC	4 cut(s)	800, 850, 1001, 2877
BmiI	GGNNCC	8 cut(s)	283, 851, 852, 874, 1002, 2878, 3128, 3372
BmrFI	CCNGG	2 cut(s)	855, 1902
BmrI	ACTGGG	1 cut(s)	905
BmsI	GCATC	8 cut(s)	250, 661, 2212, 2605, 2763, 2986, 3387, 3671
BmuI	ACTGGG	1 cut(s)	905
BpiI	GAAGAC	1 cut(s)	980
BpmI	CTGGAG	2 cut(s)	1638, 3183
Bpu10I	CCTNAGC	1 cut(s)	1555
Bpu1102I	GCTNAGC	1 cut(s)	1920
Bpu14I	TTCGAA	2 cut(s)	840, 3475
BpuEI	CTTGAG	5 cut(s)	885, 1235, 2483, 3011, 3282
BsaAI	YACGTR	2 cut(s)	3293, 3734
BsaBI	GATNNNNATC	3 cut(s)	724, 1401, 3405
BsaHI	GRCGYC	1 cut(s)	2380
BsaI	GGTCTC	1 cut(s)	670
BsaJI	CCNNGG	7 cut(s)	853, 854, 1391, 1699, 1900, 1901, 2383
BsaWI	WCCGGW	1 cut(s)	2966
Bse118I	RCCGGY	1 cut(s)	3080
Bse1I	ACTGG	9 cut(s)	303, 470, 552, 911, 1527, 1621, 2380, 3071, 3235
Bse3DI	GCAATG	2 cut(s)	1651, 3031
Bse8I	GATNNNNATC	3 cut(s)	724, 1401, 3405
BseAI	TCCGGA	1 cut(s)	2966
BseBI	CCWGG	2 cut(s)	855, 1902
BseDI	CCNNGG	7 cut(s)	853, 854, 1391, 1699, 1900, 1901, 2383
BseJI	GATNNNNATC	3 cut(s)	724, 1401, 3405
BseMI	GCAATG	2 cut(s)	1651, 3031
BseMII	CTCAG	8 cut(s)	243, 975, 1283, 1569, 1707, 1934, 2553, 2802
BseNI	ACTGG	9 cut(s)	303, 470, 552, 911, 1527, 1621, 2380, 3071, 3235
BseRI	GAGGAG	5 cut(s)	19, 101, 1210, 2486, 3152
BseSI	GKGCMC	1 cut(s)	555
BseYI	CCCAGC	1 cut(s)	846
BsgI	GTGCAG	2 cut(s)	3705, 3756
BshFI	GGCC	6 cut(s)	355, 758, 830, 1028, 3080, 3084
BsiHKAI	GWGCWC	6 cut(s)	41, 93, 555, 1921, 3298, 3595
BsiHKCI	CYCGRG	1 cut(s)	1698
BsiSI	CCGG	3 cut(s)	23, 2967, 3081
BslFI	GGGAC	6 cut(s)	163, 863, 871, 921, 2883, 2890
BsmAI	GTCTC	7 cut(s)	670, 749, 1182, 1211, 2396, 2501, 3029
BsmFI	GGGAC	6 cut(s)	163, 863, 871, 921, 2883, 2890
BsmI	GAATGC	5 cut(s)	848, 905, 1785, 2243, 2422
BsnI	GGCC	6 cut(s)	355, 758, 830, 1028, 3080, 3084
Bso31I	GGTCTC	1 cut(s)	670
BsoBI	CYCGRG	1 cut(s)	1698
Bsp119I	TTCGAA	2 cut(s)	840, 3475
Bsp1286I	GDGCHC	6 cut(s)	41, 93, 555, 1921, 3298, 3595
Bsp13I	TCCGGA	1 cut(s)	2966
Bsp1407I	TGTACA	1 cut(s)	532
Bsp1720I	GCTNAGC	1 cut(s)	1920
BspACI	CCGC	6 cut(s)	16, 877, 1827, 2874, 2887, 3368
BspANI	GGCC	6 cut(s)	355, 758, 830, 1028, 3080, 3084
BspCNI	CTCAG	8 cut(s)	244, 976, 1282, 1568, 1708, 1933, 2552, 2803
BspEI	TCCGGA	1 cut(s)	2966
BspHI	TCATGA	3 cut(s)	1366, 1630, 2850
BspLI	GGNNCC	8 cut(s)	283, 851, 852, 874, 1002, 2878, 3128, 3372
BspMAI	CTGCAG	1 cut(s)	3118
BspMI	ACCTGC	1 cut(s)	3040
BspT104I	TTCGAA	2 cut(s)	840, 3475
BspTNI	GGTCTC	1 cut(s)	670
BsrDI	GCAATG	2 cut(s)	1651, 3031
BsrFI	RCCGGY	1 cut(s)	3080
BsrGI	TGTACA	1 cut(s)	532
BsrI	ACTGG	9 cut(s)	303, 470, 552, 911, 1527, 1621, 2380, 3071, 3235
BssAI	RCCGGY	1 cut(s)	3080
BssECI	CCNNGG	7 cut(s)	853, 854, 1391, 1699, 1900, 1901, 2383
BssNI	GRCGYC	1 cut(s)	2380
BssSI	CACGAG	1 cut(s)	192
Bst2BI	CACGAG	1 cut(s)	192
Bst2UI	CCWGG	2 cut(s)	855, 1902
Bst6I	CTCTTC	5 cut(s)	881, 1090, 1430, 2043, 3261
BstACI	GRCGYC	1 cut(s)	2380
BstAUI	TGTACA	1 cut(s)	532
BstBAI	YACGTR	2 cut(s)	3293, 3734
BstBI	TTCGAA	2 cut(s)	840, 3475
BstC8I	GCNNGC	7 cut(s)	115, 488, 2605, 2656, 2767, 3082, 3111
BstDSI	CCRYGG	1 cut(s)	1391
BstEII	GGTNACC	1 cut(s)	3230
BstH2I	RGCGCY	1 cut(s)	3283
BstHHI	GCGC	2 cut(s)	119, 3282
BstMAI	GTCTC	7 cut(s)	670, 749, 1182, 1211, 2396, 2501, 3029
BstMWI	GCNNNNNNNGC	6 cut(s)	755, 843, 1570, 2600, 3217, 3659
BstNI	CCWGG	2 cut(s)	855, 1902
BstNSI	RCATGY	4 cut(s)	490, 2458, 3113, 3498
BstPI	GGTNACC	1 cut(s)	3230
BstSCI	CCNGG	2 cut(s)	853, 1900
BstSFI	CTRYAG	3 cut(s)	1137, 1803, 3114
BstSLI	GKGCMC	1 cut(s)	555
BstV2I	GAAGAC	1 cut(s)	980
BstX2I	RGATCY	6 cut(s)	872, 1210, 1523, 2668, 3126, 3406
BstXI	CCANNNNNNTGG	1 cut(s)	1534
BstYI	RGATCY	6 cut(s)	872, 1210, 1523, 2668, 3126, 3406
BsuI	GTATCC	2 cut(s)	713, 1197
BsuRI	GGCC	6 cut(s)	355, 758, 830, 1028, 3080, 3084
BtgI	CCRYGG	1 cut(s)	1391
BtgZI	GCGATG	1 cut(s)	1275
BtrI	CACGTC	2 cut(s)	70, 231
BtsI	GCAGTG	2 cut(s)	320, 2278
BtsIMutI	CAGTG	9 cut(s)	296, 320, 516, 545, 1128, 1800, 1867, 2278, 2667
BveI	ACCTGC	1 cut(s)	3040
Cac8I	GCNNGC	7 cut(s)	115, 488, 2605, 2656, 2767, 3082, 3111
CaiI	CAGNNNCTG	3 cut(s)	1616, 2654, 3241
CciI	TCATGA	3 cut(s)	1366, 1630, 2850
CfoI	GCGC	2 cut(s)	119, 3282
Cfr10I	RCCGGY	1 cut(s)	3080
Cfr13I	GGNCC	4 cut(s)	800, 850, 1001, 2877
CseI	GACGC	3 cut(s)	119, 2388, 3134
Csp6I	GTAC	6 cut(s)	533, 609, 1007, 2092, 2124, 2572
CspCI	CAANNNNNGTGG	2 cut(s)	2700, 2735
CviQI	GTAC	6 cut(s)	533, 609, 1007, 2092, 2124, 2572
DraI	TTTAAA	5 cut(s)	957, 1579, 2514, 2583, 3750
DriI	GACNNNNNGTC	1 cut(s)	1975
EaeI	YGGCCR	2 cut(s)	3078, 3082
Eam1104I	CTCTTC	5 cut(s)	881, 1090, 1430, 2043, 3261
Eam1105I	GACNNNNNGTC	1 cut(s)	1975
EarI	CTCTTC	5 cut(s)	881, 1090, 1430, 2043, 3261
EciI	GGCGGA	1 cut(s)	2902
Ecl136II	GAGCTC	2 cut(s)	39, 91
Eco24I	GRGCYC	2 cut(s)	41, 93
Eco31I	GGTCTC	1 cut(s)	670
Eco32I	GATATC	3 cut(s)	1056, 1465, 1879
Eco47I	GGWCC	4 cut(s)	800, 850, 1001, 2877
Eco53kI	GAGCTC	2 cut(s)	39, 91
Eco57I	CTGAAG	5 cut(s)	1454, 2247, 3029, 3407, 3519
Eco72I	CACGTG	1 cut(s)	3734
Eco88I	CYCGRG	1 cut(s)	1698
Eco91I	GGTNACC	1 cut(s)	3230
EcoICRI	GAGCTC	2 cut(s)	39, 91
EcoO109I	RGGNCCY	2 cut(s)	850, 1001
EcoO65I	GGTNACC	1 cut(s)	3230
EcoRI	GAATTC	3 cut(s)	1287, 1839, 1993
EcoRII	CCWGG	2 cut(s)	853, 1900
EcoRV	GATATC	3 cut(s)	1056, 1465, 1879
EcoT22I	ATGCAT	1 cut(s)	2460
EcoT38I	GRGCYC	2 cut(s)	41, 93
FalI	AAGNNNNNCTT	4 cut(s)	1660, 1692, 2558, 2590
FaqI	GGGAC	6 cut(s)	163, 863, 871, 921, 2883, 2890
FauI	CCCGC	2 cut(s)	884, 2867
FauNDI	CATATG	1 cut(s)	979
FblI	GTMKAC	3 cut(s)	895, 1806, 3601
FriOI	GRGCYC	2 cut(s)	41, 93
FseI	GGCCGGCC	1 cut(s)	3084
GlaI	GCGC	2 cut(s)	118, 3281
GsaI	CCCAGC	1 cut(s)	850
GsuI	CTGGAG	2 cut(s)	1638, 3183
HaeII	RGCGCY	1 cut(s)	3283
HaeIII	GGCC	6 cut(s)	355, 758, 830, 1028, 3080, 3084
HapII	CCGG	3 cut(s)	23, 2967, 3081
HgaI	GACGC	3 cut(s)	119, 2388, 3134
HhaI	GCGC	2 cut(s)	119, 3282
Hin1I	GRCGYC	1 cut(s)	2380
Hin6I	GCGC	2 cut(s)	117, 3280
HinP1I	GCGC	2 cut(s)	117, 3280
HincII	GTYRAC	2 cut(s)	2678, 3602
HindII	GTYRAC	2 cut(s)	2678, 3602
HindIII	AAGCTT	2 cut(s)	342, 1036
HpaII	CCGG	3 cut(s)	23, 2967, 3081
HphI	GGTGA	4 cut(s)	67, 1467, 1648, 2336
HpyCH4IV	ACGT	6 cut(s)	69, 230, 1120, 3292, 3733, 3745
HpyF10VI	GCNNNNNNNGC	6 cut(s)	755, 843, 1570, 2600, 3217, 3659
HpySE526I	ACGT	6 cut(s)	69, 230, 1120, 3292, 3733, 3745
Hsp92I	GRCGYC	1 cut(s)	2380
HspAI	GCGC	2 cut(s)	117, 3280
KflI	GGGWCCC	1 cut(s)	850
Kpn2I	TCCGGA	1 cut(s)	2966
KroI	GCCGGC	1 cut(s)	3080
KroNI	GCCGGC	1 cut(s)	3082
LweI	GCATC	8 cut(s)	250, 661, 2212, 2605, 2763, 2986, 3387, 3671
MaeII	ACGT	6 cut(s)	69, 230, 1120, 3292, 3733, 3745
MaeIII	GTNAC	8 cut(s)	334, 1121, 2098, 3146, 3184, 3230, 3237, 3705
MfeI	CAATTG	1 cut(s)	824
MflI	RGATCY	6 cut(s)	872, 1210, 1523, 2668, 3126, 3406
MhlI	GDGCHC	6 cut(s)	41, 93, 555, 1921, 3298, 3595
MlyI	GAGTC	2 cut(s)	2512, 2984
MmeI	TCCRAC	2 cut(s)	850, 1433
Mph1103I	ATGCAT	1 cut(s)	2460
MroI	TCCGGA	1 cut(s)	2966
MroNI	GCCGGC	1 cut(s)	3080
MroXI	GAANNNNTTC	3 cut(s)	383, 2573, 3420
MslI	CAYNNNNRTG	2 cut(s)	3249, 3714
MspA1I	CMGCKG	1 cut(s)	863
MspI	CCGG	3 cut(s)	23, 2967, 3081
MspR9I	CCNGG	2 cut(s)	855, 1902
MssI	GTTTAAAC	1 cut(s)	3750
MunI	CAATTG	1 cut(s)	824
Mva1269I	GAATGC	5 cut(s)	848, 905, 1785, 2243, 2422
MvaI	CCWGG	2 cut(s)	855, 1902
MwoI	GCNNNNNNNGC	6 cut(s)	755, 843, 1570, 2600, 3217, 3659
NaeI	GCCGGC	1 cut(s)	3082
NdeI	CATATG	1 cut(s)	979
NgoMIV	GCCGGC	1 cut(s)	3080
NlaIV	GGNNCC	8 cut(s)	283, 851, 852, 874, 1002, 2878, 3128, 3372
NmeAIII	GCCGAG	2 cut(s)	2408, 3734
NmuCI	GTSAC	3 cut(s)	1121, 2098, 3146
NsiI	ATGCAT	1 cut(s)	2460
NspI	RCATGY	4 cut(s)	490, 2458, 3113, 3498
NspV	TTCGAA	2 cut(s)	840, 3475
PaeI	GCATGC	2 cut(s)	490, 3113
PagI	TCATGA	3 cut(s)	1366, 1630, 2850
PaqCI	CACCTGC	1 cut(s)	3040
PasI	CCCWGGG	2 cut(s)	854, 1901
PctI	GAATGC	5 cut(s)	848, 905, 1785, 2243, 2422
PdiI	GCCGGC	1 cut(s)	3082
PdmI	GAANNNNTTC	3 cut(s)	383, 2573, 3420
PflFI	GACNNNGTC	1 cut(s)	518
PflMI	CCANNNNNTGG	2 cut(s)	2654, 3227
PleI	GAGTC	2 cut(s)	2511, 2984
PmaCI	CACGTG	1 cut(s)	3734
PmeI	GTTTAAAC	1 cut(s)	3750
PmlI	CACGTG	1 cut(s)	3734
PpsI	GAGTC	2 cut(s)	2511, 2984
Ppu21I	YACGTR	2 cut(s)	3293, 3734
PpuMI	RGGWCCY	2 cut(s)	850, 1001
PshBI	ATTAAT	1 cut(s)	777
PsiI	TTATAA	2 cut(s)	1857, 2313
Psp124BI	GAGCTC	2 cut(s)	41, 93
Psp1406I	AACGTT	1 cut(s)	3745
Psp5II	RGGWCCY	2 cut(s)	850, 1001
Psp6I	CCWGG	2 cut(s)	853, 1900
PspCI	CACGTG	1 cut(s)	3734
PspEI	GGTNACC	1 cut(s)	3230
PspFI	CCCAGC	1 cut(s)	846
PspGI	CCWGG	2 cut(s)	853, 1900
PspN4I	GGNNCC	8 cut(s)	283, 851, 852, 874, 1002, 2878, 3128, 3372
PspPI	GGNCC	4 cut(s)	800, 850, 1001, 2877
PspPPI	RGGWCCY	2 cut(s)	850, 1001
PstI	CTGCAG	1 cut(s)	3118
PstNI	CAGNNNCTG	3 cut(s)	1616, 2654, 3241
PsuI	RGATCY	6 cut(s)	872, 1210, 1523, 2668, 3126, 3406
PsyI	GACNNNGTC	1 cut(s)	518
PvuII	CAGCTG	1 cut(s)	863
RigI	GGCCGGCC	1 cut(s)	3084
RsaI	GTAC	6 cut(s)	534, 610, 1008, 2093, 2125, 2573
RsaNI	GTAC	6 cut(s)	533, 609, 1007, 2092, 2124, 2572
RseI	CAYNNNNRTG	2 cut(s)	3249, 3714
SacI	GAGCTC	2 cut(s)	41, 93
SalI	GTCGAC	1 cut(s)	3600
Sau96I	GGNCC	4 cut(s)	800, 850, 1001, 2877
ScaI	AGTACT	1 cut(s)	2573
SchI	GAGTC	2 cut(s)	2512, 2984
ScrFI	CCNGG	2 cut(s)	855, 1902
SduI	GDGCHC	6 cut(s)	41, 93, 555, 1921, 3298, 3595
SfaNI	GCATC	8 cut(s)	250, 661, 2212, 2605, 2763, 2986, 3387, 3671
SfcI	CTRYAG	3 cut(s)	1137, 1803, 3114
SfuI	TTCGAA	2 cut(s)	840, 3475
SinI	GGWCC	4 cut(s)	800, 850, 1001, 2877
SmiMI	CAYNNNNRTG	2 cut(s)	3249, 3714
SmlI	CTYRAG	5 cut(s)	900, 1214, 2498, 3026, 3297
SmoI	CTYRAG	5 cut(s)	900, 1214, 2498, 3026, 3297
SpeI	ACTAGT	1 cut(s)	3619
SphI	GCATGC	2 cut(s)	490, 3113
SsiI	CCGC	6 cut(s)	16, 877, 1827, 2874, 2887, 3368
SspI	AATATT	2 cut(s)	767, 2213
SstI	GAGCTC	2 cut(s)	41, 93
StyD4I	CCNGG	2 cut(s)	853, 1900
TaiI	ACGT	6 cut(s)	72, 233, 1123, 3295, 3736, 3748
TaqI	TCGA	8 cut(s)	41, 305, 840, 971, 1342, 3475, 3601, 3712
TaqII	GACCGA	1 cut(s)	36
TatI	WGTACW	3 cut(s)	532, 1006, 2571
TauI	GCSGC	1 cut(s)	1830
TscAI	CASTG	9 cut(s)	303, 327, 523, 552, 1135, 1807, 1867, 2285, 2667
TseFI	GTSAC	3 cut(s)	1121, 2098, 3146
Tsp45I	GTSAC	3 cut(s)	1121, 2098, 3146
TspGWI	ACGGA	1 cut(s)	2100
TspRI	CASTG	9 cut(s)	303, 327, 523, 552, 1135, 1807, 1867, 2285, 2667
Tth111I	GACNNNGTC	1 cut(s)	518
Van91I	CCANNNNNTGG	2 cut(s)	2654, 3227
VneI	GTGCAC	1 cut(s)	551
VpaK11BI	GGWCC	4 cut(s)	800, 850, 1001, 2877
VspI	ATTAAT	1 cut(s)	777
XbaI	TCTAGA	1 cut(s)	2330
XceI	RCATGY	4 cut(s)	490, 2458, 3113, 3498
XcmI	CCANNNNNNNNNTGG	2 cut(s)	637, 3593
XmiI	GTMKAC	3 cut(s)	895, 1806, 3601
XmnI	GAANNNNTTC	3 cut(s)	383, 2573, 3420
ZrmI	AGTACT	1 cut(s)	2573
Zsp2I	ATGCAT	1 cut(s)	2460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.