Rroxscaffold_2G00140380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001461
Physical Location & Seq
Reverse (-)
78610368 .. 78615200
4833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00140380.1

Sequence Viewer

Length: 405 bp
ATGGACAAAGTCAAAGGGAAGGCCCATTGGATGGGAGTATCCTTTCAAGCATTAGGAGGATGTGCAACTGCAGTCCACTGCACAAACAACTTTGATGAACACAACTATGCCATCAAGAAGATTTCTATTGGTGAAGTGTTTGTAGATGACTCTGACTCACAAACTACCAGCTATGCAAGTAAAGAAGATGATGACGATGACTTGGCAACATATTCAGCTTACCATGCACCTGAGAGGATGAATGACGATGCAAGGGCAAAGCCAGATTGCAAGGCAGACATCTTCAGCCTAGGGATTATACTGTTTGAGATGCTGCAACCTTTCACAACATATGTAAAAGATTTAATTGCTAAGTTCCATTTCGAGTACAAAATCTTTAATTGCTTCGAATATCTCAAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.26

Weight (kDa)

4.94

Isoelectric Point (pI)

25.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 31
AcuI CTGAAG 1 cut(s) 268
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 1 cut(s) 47
AluBI AGCT 2 cut(s) 171, 218
AluI AGCT 2 cut(s) 171, 218
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 1 cut(s) 313
AspA2I CCTAGG 1 cut(s) 289
AspS9I GGNCC 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 143
AsuII TTCGAA 1 cut(s) 387
AvrII CCTAGG 1 cut(s) 289
BbvI GCAGC 1 cut(s) 300
BccI CCATC 2 cut(s) 25, 119
BciVI GTATCC 1 cut(s) 49
BfaI CTAG 1 cut(s) 290
BfmI CTRYAG 1 cut(s) 69
BfuI GTATCC 1 cut(s) 49
BisI GCNGC 1 cut(s) 314
BlnI CCTAGG 1 cut(s) 289
BlsI GCNGC 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 22
BmsI GCATC 2 cut(s) 238, 300
Bpu14I TTCGAA 1 cut(s) 387
BsaJI CCNNGG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 3 cut(s) 36, 65, 243
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 300
BsgI GTGCAG 1 cut(s) 64
BshFI GGCC 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 31
BsnI GGCC 1 cut(s) 23
Bsp119I TTCGAA 1 cut(s) 387
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 1 cut(s) 223
BspMAI CTGCAG 1 cut(s) 73
BspT104I TTCGAA 1 cut(s) 387
BssECI CCNNGG 1 cut(s) 289
BssT1I CCWWGG 1 cut(s) 289
Bst4CI ACNGT 1 cut(s) 303
BstBI TTCGAA 1 cut(s) 387
BstDEI CTNAG 2 cut(s) 231, 351
BstF5I GGATG 3 cut(s) 36, 65, 243
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstSFI CTRYAG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 300
BsuI GTATCC 1 cut(s) 49
BsuRI GGCC 1 cut(s) 23
BtsCI GGATG 3 cut(s) 36, 65, 243
BtsI GCAGTG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 22
Csp6I GTAC 1 cut(s) 367
CviAII CATG 1 cut(s) 224
CviJI RGCY 5 cut(s) 23, 171, 218, 262, 288
CviKI_1 RGCY 5 cut(s) 23, 171, 218, 262, 288
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 2 cut(s) 231, 351
Eco130I CCWWGG 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 1 cut(s) 227
FaiI YATR 7 cut(s) 108, 174, 211, 225, 299, 331, 333
FatI CATG 1 cut(s) 223
FauNDI CATATG 1 cut(s) 331
Fnu4HI GCNGC 1 cut(s) 314
FokI GGATG 3 cut(s) 43, 72, 250
Fsp4HI GCNGC 1 cut(s) 314
FspBI CTAG 1 cut(s) 290
GluI GCNGC 1 cut(s) 314
HaeIII GGCC 1 cut(s) 23
Hin1II CATG 1 cut(s) 227
HinfI GANTC 2 cut(s) 149, 155
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 1 cut(s) 115
Hpy8I GTNNAC 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 303
HpyCH4V TGCA 8 cut(s) 65, 71, 81, 176, 227, 251, 270, 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 2 cut(s) 231, 351
Hsp92II CATG 1 cut(s) 227
LpnPI CCDG 3 cut(s) 181, 243, 276
Lsp1109I GCAGC 1 cut(s) 300
LweI GCATC 2 cut(s) 238, 300
MaeI CTAG 1 cut(s) 290
MboII GAAGA 3 cut(s) 130, 197, 274
MluCI AATT 2 cut(s) 345, 379
MlyI GAGTC 2 cut(s) 143, 149
MnlI CCTC 2 cut(s) 50, 228
MseI TTAA 2 cut(s) 344, 378
MslI CAYNNNNRTG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 224
NdeI CATATG 1 cut(s) 331
NlaIII CATG 1 cut(s) 227
NspV TTCGAA 1 cut(s) 387
PflFI GACNNNGTC 1 cut(s) 8
PflMI CCANNNNNTGG 1 cut(s) 31
PkrI GCNGC 1 cut(s) 315
PleI GAGTC 2 cut(s) 143, 149
PpsI GAGTC 2 cut(s) 143, 149
PspPI GGNCC 1 cut(s) 22
PstI CTGCAG 1 cut(s) 73
PsyI GACNNNGTC 1 cut(s) 8
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
RseI CAYNNNNRTG 1 cut(s) 105
SaqAI TTAA 2 cut(s) 344, 378
SatI GCNGC 1 cut(s) 314
Sau96I GGNCC 1 cut(s) 22
SchI GAGTC 2 cut(s) 143, 149
SetI ASST 4 cut(s) 173, 220, 232, 322
SfaNI GCATC 2 cut(s) 238, 300
SfcI CTRYAG 1 cut(s) 69
SfuI TTCGAA 1 cut(s) 387
SmiMI CAYNNNNRTG 1 cut(s) 105
Sse9I AATT 2 cut(s) 345, 379
SspMI CTAG 1 cut(s) 290
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 1 cut(s) 303
TaqI TCGA 2 cut(s) 363, 387
TasI AATT 2 cut(s) 345, 379
TatI WGTACW 1 cut(s) 366
Tru1I TTAA 2 cut(s) 344, 378
Tru9I TTAA 2 cut(s) 344, 378
TscAI CASTG 1 cut(s) 83
TseI GCWGC 1 cut(s) 313
TspDTI ATGAA 2 cut(s) 111, 254
TspRI CASTG 1 cut(s) 83
Tth111I GACNNNGTC 1 cut(s) 8
Van91I CCANNNNNTGG 1 cut(s) 31
XmaJI CCTAGG 1 cut(s) 289
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.