Rorug02G0107800

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000947
Physical Location & Seq
Forward (+)
9196173 .. 9200610
4438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0107800.1

Sequence Viewer

Length: 1239 bp
ATGGGTTTCTGGACTCTGCTTGAGGTGGCATCTATGCCAGTTCTGCAAGTTTTGATAATCAGTCTGTTGGGAGCTTACCTGTCTACTGAGTATTGCAATCTTCTTCCTTCAGGCGCCAGAAGATCCTTGAATAGGATAGTGTTTGTGGTGTTTACACCCTCCCTCATGTTTGCAAGTGTTGCCAAAACTGTCACATTTGATGACATCATTTCATGGTGGTTTATGATTGTCAATGTGGGACTTACATTTTTGTTTGGAACCATTCTTGGATGGTTAGTGGTAAAGATACTGAAACCAAAGCCTTATCAGGAAGGCCTTGTAATTGCTACATGTTCATCAGCAAACTTGGGAAACCTTCTACTTATAGTTGTGCCAGCAATTTGTCATGAGGATGGGAACCCTTTCGGCGATCATGAAGTTTGTAGCGCAGTTGGACTCTCCTATGTCTCGTTTTCCATGGCGCTTGGTGGTTTCTTCATTTGGACTTATACTTATCAGCTGATAAAGTCCTCATCTGTGAAATTTATAGCGCTTCAAGAAGCAGAAAATGAGGCCGCGAAGAGGCCAAACAAAGATTTAGATGCTGATGGAGCAACTCACCTTCTCAAAGGAGGAGATGAAGAGCAGGGCTCTATTGTAGTCTCATCTAAATCTGCGGATCACCCCCCTGCTCAGATAGTAGCTCATGAACCAGATGTATCATTCCCCCGAAAAGTATTAGCGTTCTCTAAACAGATTTTACATGAGTTACTGGCACCACCAACTCTAGCTGCATTTATTGGATTTGTCTTTGGGGCAATTCCATGGCTTAAACGCTTGATAATTGGTGACTCAGCCCCCCTCCGAGTGATCCAAGACTCAATTGCACAACTTGGGAATGGAACTATTCCTTGTATCACACTTATTCTTGGAGGCAATCTCATCCAAGGCTTACGAGCATCGACAATCAAAATACCTGTCATCCTTGGAATCATCGTTGCTCGATATATTCTACTTCCAGTAATTGGTATTTGGATTGTAAAAGGAGCAGACCAACTAGGGTTTCTCCCACCAGACCCTTTGTTCAAGTTTGTGCTGATGGTTCAATTCACATTGCCACCTGCCATGAACATTGGTACCATAACCCAGCTGTTTGATGTCGCCGAGGCAGAGTGCTCGGTCATCTTCCTGTGGACATACTTGGTCTGTGCCCTAGCACTTACTGTGTGGTCTACAGTCTACATGTGGATCTTGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

412

Amino Acids

44.91

Weight (kDa)

5.88

Isoelectric Point (pI)

34.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 10 - 403 7.2e-87 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1108
Acc36I ACCTGC 1 cut(s) 1108
Acc65I GGTACC 1 cut(s) 1115
AccB1I GGYRCC 3 cut(s) 113, 754, 1115
AccB7I CCANNNNNTGG 1 cut(s) 1004
AccI GTMKAC 3 cut(s) 83, 1211, 1218
AccII CGCG 1 cut(s) 557
AciI CCGC 2 cut(s) 555, 656
AclWI GGATC 4 cut(s) 117, 666, 844, 1235
AcsI RAATTY 1 cut(s) 521
AcuI CTGAAG 1 cut(s) 93
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 1 cut(s) 1117
AfeI AGCGCT 1 cut(s) 531
AfiI CCNNNNNNNGG 3 cut(s) 132, 561, 1004
AflIII ACRYGT 2 cut(s) 329, 1221
AgsI TTSAA 4 cut(s) 130, 536, 1066, 1085
AjuI GAANNNNNNNTTGG 2 cut(s) 1026, 1058
AluBI AGCT 5 cut(s) 74, 499, 683, 770, 1129
AluI AGCT 5 cut(s) 74, 499, 683, 770, 1129
Alw21I GWGCWC 1 cut(s) 1157
Alw26I GTCTC 2 cut(s) 451, 646
AlwI GGATC 4 cut(s) 117, 666, 844, 1235
Aor51HI AGCGCT 1 cut(s) 531
AoxI GGCC 3 cut(s) 313, 552, 563
ApeKI GCWGC 1 cut(s) 770
ApoI RAATTY 1 cut(s) 521
ArsI GACNNNNNNTTYG 2 cut(s) 942, 974
Asp700I GAANNNNTTC 1 cut(s) 401
Asp718I GGTACC 1 cut(s) 1115
AspLEI GCGC 4 cut(s) 116, 428, 463, 532
AsuHPI GGTGA 3 cut(s) 590, 653, 839
BaeGI GKGCMC 1 cut(s) 1192
BaeI ACNNNNGTAYC 2 cut(s) 1099, 1132
BanI GGYRCC 3 cut(s) 113, 754, 1115
BanII GRGCYC 1 cut(s) 632
Bbv12I GWGCWC 1 cut(s) 1157
BbvI GCAGC 1 cut(s) 757
BccI CCATC 4 cut(s) 264, 386, 581, 1072
BcgI CGANNNNNNTGC 2 cut(s) 1137, 1171
BcoDI GTCTC 2 cut(s) 451, 646
BfaI CTAG 3 cut(s) 767, 1037, 1193
BfmI CTRYAG 1 cut(s) 1212
BfoI RGCGCY 3 cut(s) 117, 464, 533
BfuAI ACCTGC 1 cut(s) 1108
BisI GCNGC 2 cut(s) 555, 771
BlsI GCNGC 2 cut(s) 556, 772
BmiI GGNNCC 5 cut(s) 115, 259, 398, 756, 1117
BmsI GCATC 3 cut(s) 38, 571, 947
BplI GAGNNNNNCTC 4 cut(s) 614, 646, 903, 935
BpuEI CTTGAG 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 5 cut(s) 456, 803, 925, 964, 1143
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 561, 1004
Bse1I ACTGG 3 cut(s) 38, 756, 998
Bse3DI GCAATG 1 cut(s) 1091
BseDI CCNNGG 5 cut(s) 456, 803, 925, 964, 1143
BseGI GGATG 4 cut(s) 275, 397, 921, 960
BseLI CCNNNNNNNGG 3 cut(s) 132, 561, 1004
BseMI GCAATG 1 cut(s) 1091
BseMII CTCAG 3 cut(s) 78, 686, 846
BseNI ACTGG 3 cut(s) 38, 756, 998
BseRI GAGGAG 1 cut(s) 627
BseSI GKGCMC 1 cut(s) 1192
BseXI GCAGC 1 cut(s) 757
BseYI CCCAGC 1 cut(s) 1125
Bsh1236I CGCG 1 cut(s) 557
BshFI GGCC 3 cut(s) 315, 554, 565
BshNI GGYRCC 3 cut(s) 113, 754, 1115
BsiHKAI GWGCWC 1 cut(s) 1157
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 3 cut(s) 132, 561, 1004
BsmAI GTCTC 2 cut(s) 451, 646
BsmFI GGGAC 1 cut(s) 252
BsnI GGCC 3 cut(s) 315, 554, 565
Bsp1286I GDGCHC 3 cut(s) 632, 1157, 1192
Bsp143I GATC 5 cut(s) 122, 409, 658, 849, 1227
Bsp19I CCATGG 2 cut(s) 456, 803
BspACI CCGC 2 cut(s) 555, 656
BspANI GGCC 3 cut(s) 315, 554, 565
BspCNI CTCAG 3 cut(s) 79, 685, 845
BspFNI CGCG 1 cut(s) 557
BspHI TCATGA 3 cut(s) 385, 412, 685
BspLI GGNNCC 5 cut(s) 115, 259, 398, 756, 1117
BspMI ACCTGC 1 cut(s) 1108
BspPI GGATC 4 cut(s) 117, 666, 844, 1235
BspQI GCTCTTC 1 cut(s) 615
BspT107I GGYRCC 3 cut(s) 113, 754, 1115
BsrDI GCAATG 1 cut(s) 1091
BsrI ACTGG 3 cut(s) 38, 756, 998
BssECI CCNNGG 5 cut(s) 456, 803, 925, 964, 1143
BssMI GATC 5 cut(s) 122, 409, 658, 849, 1227
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 4 cut(s) 456, 803, 925, 964
Bst4CI ACNGT 3 cut(s) 190, 1204, 1216
Bst6I CTCTTC 2 cut(s) 554, 615
BstACI GRCGYC 1 cut(s) 114
BstAPI GCANNNNNTGC 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 3 cut(s) 87, 672, 832
BstDSI CCRYGG 2 cut(s) 456, 803
BstENI CCTNNNNNAGG 1 cut(s) 130
BstF5I GGATG 4 cut(s) 275, 397, 921, 960
BstFNI CGCG 1 cut(s) 557
BstH2I RGCGCY 3 cut(s) 117, 464, 533
BstHHI GCGC 4 cut(s) 116, 428, 463, 532
BstKTI GATC 5 cut(s) 125, 412, 661, 852, 1230
BstMAI GTCTC 2 cut(s) 451, 646
BstMBI GATC 5 cut(s) 122, 409, 658, 849, 1227
BstMWI GCNNNNNNNGC 3 cut(s) 43, 179, 590
BstNSI RCATGY 2 cut(s) 333, 1225
BstSFI CTRYAG 1 cut(s) 1212
BstSLI GKGCMC 1 cut(s) 1192
BstUI CGCG 1 cut(s) 557
BstV1I GCAGC 1 cut(s) 757
BstX2I RGATCY 2 cut(s) 122, 1227
BstYI RGATCY 2 cut(s) 122, 1227
BsuRI GGCC 3 cut(s) 315, 554, 565
BtgI CCRYGG 2 cut(s) 456, 803
BtsCI GGATG 4 cut(s) 275, 397, 921, 960
BveI ACCTGC 1 cut(s) 1108
Cac8I GCNNGC 1 cut(s) 375
CciI TCATGA 3 cut(s) 385, 412, 685
CfoI GCGC 4 cut(s) 116, 428, 463, 532
Csp6I GTAC 1 cut(s) 1116
CviQI GTAC 1 cut(s) 1116
DdeI CTNAG 3 cut(s) 87, 672, 832
DinI GGCGCC 1 cut(s) 115
DpnI GATC 5 cut(s) 124, 411, 660, 851, 1229
DpnII GATC 5 cut(s) 122, 409, 658, 849, 1227
Eam1104I CTCTTC 2 cut(s) 554, 615
EarI CTCTTC 2 cut(s) 554, 615
Eco130I CCWWGG 4 cut(s) 456, 803, 925, 964
Eco147I AGGCCT 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 632
Eco47III AGCGCT 1 cut(s) 531
Eco57I CTGAAG 1 cut(s) 93
EcoNI CCTNNNNNAGG 1 cut(s) 130
EcoT14I CCWWGG 4 cut(s) 456, 803, 925, 964
EcoT38I GRGCYC 1 cut(s) 632
EgeI GGCGCC 1 cut(s) 115
EheI GGCGCC 1 cut(s) 115
ErhI CCWWGG 4 cut(s) 456, 803, 925, 964
FaqI GGGAC 1 cut(s) 252
FblI GTMKAC 3 cut(s) 83, 1211, 1218
Fnu4HI GCNGC 2 cut(s) 555, 771
FokI GGATG 4 cut(s) 282, 404, 908, 947
FriOI GRGCYC 1 cut(s) 632
Fsp4HI GCNGC 2 cut(s) 555, 771
FspBI CTAG 3 cut(s) 767, 1037, 1193
GlaI GCGC 4 cut(s) 115, 427, 462, 531
GluI GCNGC 2 cut(s) 555, 771
GsaI CCCAGC 1 cut(s) 1129
HaeII RGCGCY 3 cut(s) 117, 464, 533
HaeIII GGCC 3 cut(s) 315, 554, 565
HhaI GCGC 4 cut(s) 116, 428, 463, 532
Hin1I GRCGYC 1 cut(s) 114
Hin6I GCGC 4 cut(s) 114, 426, 461, 530
HinP1I GCGC 4 cut(s) 114, 426, 461, 530
HinfI GANTC 5 cut(s) 13, 435, 830, 857, 969
HphI GGTGA 3 cut(s) 590, 653, 839
Hpy166II GTNNAC 5 cut(s) 84, 153, 1173, 1212, 1219
Hpy188I TCNGA 2 cut(s) 675, 845
Hpy188III TCNNGA 7 cut(s) 10, 308, 386, 413, 536, 686, 1236
Hpy8I GTNNAC 5 cut(s) 84, 153, 1173, 1212, 1219
HpyAV CCTTC 4 cut(s) 117, 305, 365, 611
HpyCH4III ACNGT 3 cut(s) 190, 1204, 1216
HpyCH4V TGCA 5 cut(s) 46, 96, 173, 773, 866
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 179, 590
HpyF3I CTNAG 3 cut(s) 87, 672, 832
Hsp92I GRCGYC 1 cut(s) 114
HspAI GCGC 4 cut(s) 114, 426, 461, 530
KasI GGCGCC 1 cut(s) 113
KpnI GGTACC 1 cut(s) 1119
Kzo9I GATC 5 cut(s) 122, 409, 658, 849, 1227
LguI GCTCTTC 1 cut(s) 615
LmnI GCTCC 3 cut(s) 71, 590, 1025
Lsp1109I GCAGC 1 cut(s) 757
LweI GCATC 3 cut(s) 38, 571, 947
MaeI CTAG 3 cut(s) 767, 1037, 1193
MaeIII GTNAC 3 cut(s) 190, 747, 827
MalI GATC 5 cut(s) 124, 411, 660, 851, 1229
MboI GATC 5 cut(s) 122, 409, 658, 849, 1227
MboII GAAGA 7 cut(s) 92, 95, 132, 466, 571, 632, 1156
MfeI CAATTG 1 cut(s) 861
MflI RGATCY 2 cut(s) 122, 1227
MhlI GDGCHC 3 cut(s) 632, 1157, 1192
MluCI AATT 8 cut(s) 321, 378, 521, 798, 822, 861, 1002, 1085
Mly113I GGCGCC 1 cut(s) 114
MlyI GAGTC 4 cut(s) 7, 429, 824, 851
MmeI TCCRAC 1 cut(s) 412
MroXI GAANNNNTTC 1 cut(s) 401
MseI TTAA 1 cut(s) 810
MslI CAYNNNNRTG 1 cut(s) 390
MspA1I CMGCKG 2 cut(s) 499, 1129
MunI CAATTG 1 cut(s) 861
MvnI CGCG 1 cut(s) 557
MwoI GCNNNNNNNGC 3 cut(s) 43, 179, 590
NarI GGCGCC 1 cut(s) 114
NcoI CCATGG 2 cut(s) 456, 803
NdeII GATC 5 cut(s) 122, 409, 658, 849, 1227
NlaIV GGNNCC 5 cut(s) 115, 259, 398, 756, 1117
NmeAIII GCCGAG 1 cut(s) 1168
NmuCI GTSAC 2 cut(s) 190, 827
NspI RCATGY 2 cut(s) 333, 1225
PagI TCATGA 3 cut(s) 385, 412, 685
PaqCI CACCTGC 1 cut(s) 1108
PceI AGGCCT 1 cut(s) 315
PciI ACATGT 2 cut(s) 329, 1221
PciSI GCTCTTC 1 cut(s) 615
PdmI GAANNNNTTC 1 cut(s) 401
PfeI GAWTC 1 cut(s) 969
PflMI CCANNNNNTGG 1 cut(s) 1004
PkrI GCNGC 2 cut(s) 556, 772
PleI GAGTC 4 cut(s) 7, 429, 824, 851
PluTI GGCGCC 1 cut(s) 117
PpsI GAGTC 4 cut(s) 7, 429, 824, 851
PscI ACATGT 2 cut(s) 329, 1221
PspFI CCCAGC 1 cut(s) 1125
PspN4I GGNNCC 5 cut(s) 115, 259, 398, 756, 1117
PsuI RGATCY 2 cut(s) 122, 1227
PvuII CAGCTG 2 cut(s) 499, 1129
RsaI GTAC 1 cut(s) 1117
RsaNI GTAC 1 cut(s) 1116
RseI CAYNNNNRTG 1 cut(s) 390
SapI GCTCTTC 1 cut(s) 615
SaqAI TTAA 1 cut(s) 810
SatI GCNGC 2 cut(s) 555, 771
Sau3AI GATC 5 cut(s) 122, 409, 658, 849, 1227
SchI GAGTC 4 cut(s) 7, 429, 824, 851
SduI GDGCHC 3 cut(s) 632, 1157, 1192
SfaNI GCATC 3 cut(s) 38, 571, 947
SfcI CTRYAG 1 cut(s) 1212
SfoI GGCGCC 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 390
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 8 cut(s) 321, 378, 521, 798, 822, 861, 1002, 1085
SseBI AGGCCT 1 cut(s) 315
SsiI CCGC 2 cut(s) 555, 656
SspDI GGCGCC 1 cut(s) 113
SspMI CTAG 3 cut(s) 767, 1037, 1193
StuI AGGCCT 1 cut(s) 315
StyI CCWWGG 4 cut(s) 456, 803, 925, 964
TaaI ACNGT 3 cut(s) 190, 1204, 1216
TaqI TCGA 2 cut(s) 941, 982
TaqII GACCGA 1 cut(s) 1147
TasI AATT 8 cut(s) 321, 378, 521, 798, 822, 861, 1002, 1085
TauI GCSGC 1 cut(s) 557
TfiI GAWTC 1 cut(s) 969
Tru1I TTAA 1 cut(s) 810
Tru9I TTAA 1 cut(s) 810
TseFI GTSAC 2 cut(s) 190, 827
TseI GCWGC 1 cut(s) 770
Tsp45I GTSAC 2 cut(s) 190, 827
TspDTI ATGAA 7 cut(s) 201, 324, 429, 466, 633, 702, 1121
Van91I CCANNNNNTGG 1 cut(s) 1004
XagI CCTNNNNNAGG 1 cut(s) 130
XapI RAATTY 1 cut(s) 521
XceI RCATGY 2 cut(s) 333, 1225
XmiI GTMKAC 3 cut(s) 83, 1211, 1218
XmnI GAANNNNTTC 1 cut(s) 401
XspI CTAG 3 cut(s) 767, 1037, 1193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.