Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013762.1

Orthogroup ID

OG0000947

Physical Location & Seq

Genomic Coordinates Forward (+)

796 .. 1686

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013762.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgggggatttatgcgaggatttgtgggttgagattttgggtagactatcatcggagaaggacttggtgccatgcatgagcaggtccaagttatggcaccgaataacatctggcctttgggtgcagagattttgggcgcagtcccctcctttgggtcttttcttccgcgccaccaccaccaccgtagacaaggtattgcatcgtatgaattatatctcttcatataattatcatgccatggaagataacctgcaaagcactcgttcttgcggaggtcaattttatgacgaagaatcgtataggtccaaaaagtctcattggcagtattttgatcgacaatggtataagccgggtgccactgctgaatccactgatcgtgatgagtacataaatggttgcaatggtttagttttgttaatgaaatcaacaacttatcagttttatgtttgcaatcccatcacaagacaacaagttgccatacctaaagcctgtgtccaccaaaaccatgatgatcagcatttttgtgctgctttggcttttgacccttccgaatctgctcatcacttcagagttgttagaattgattattctgcaccctactcagctgtgctggatatattctcgtctgaatatggactgtgggtccgacattggctgcaaattgacccaggttttactgagggattcaaaagctccaagttgtgcaggcattttgtttacttgcagggcacgctatacagcatagccctatcctggaagcttttatgcattgacctcaatactgttgcagcttctgcccttgaacttccggttccagaggatgaaaagaccggagccatgggatgtcttggggtgtcgatgaatagtctctgcaatatgaatgctcgataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

296

Amino Acids

33.97

Weight (kDa)

6.4

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14071 FvH4_1g14191
malus_domestica	MD12G1051600.v1.1 MD12G1211200.v1.1 MD15G1028800.v1.1 MD15G1268400.v1.1
prunus_persica	Prupe.7G151200_v2.0.a1 Prupe.7G151200_v2.0.a1
pyrus_communis	pycom02g12120 pycom12g06960 pycom15g23320
rosa_chinensis	RchiOBHm_Chr2g0102561 RchiOBHm_Chr2g0102901
rosa_laevigata	RLG00000017149 RLG00000017152 RLG00000017154 RLG00000017156 RLG00000017167 RLG00000017168 RLG00000017170 RLG00000017172 RLG00000017173 RLG00000017175 RLG00000028983 RLG00000028984
rosa_multiflora	Rmu_sc0000388.1_g000052 Rmu_sc0000474.1_g000001 Rmu_sc0002077.1_g000009 Rmu_sc0002077.1_g000013 Rmu_sc0003804.1_g000016 Rmu_sc0003804.1_g000017 Rmu_sc0003804.1_g000032 Rmu_sc0005579.1_g000011 Rmu_sc0005881.1_g000007 Rmu_sc0005881.1_g000008 Rmu_sc0006537.1_g000002 Rmu_sc0008034.1_g000006 Rmu_sc0013762.1_g000002
rosa_roxburghii	Rroxscaffold_2G00140470 Rroxscaffold_2G00140500 Rroxscaffold_4G00310850 Rroxscaffold_4G00310900
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108900 Rorug02G0109000 Rorug02G0109100
rosa_samantha	Rh1BG085900 Rh2AG155400 Rh2AG156100 Rh2AG156500 Rh2AG156700 Rh2BG162400 Rh2CG161400 Rh2CG161800 Rh2CG163300 Rh2CG163500 Rh2CG165100 Rh2DG161000 Rh2DG161600 Rh2DG162000 Rh5BG333000
rosa_wichuraiana	Rw2G012160 Rw2G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	72, 258
AccB1I	GGYRCC	3 cut(s)	67, 96, 353
AccB7I	CCANNNNNTGG	1 cut(s)	93
AccI	GTMKAC	2 cut(s)	43, 186
AccII	CGCG	1 cut(s)	168
AciI	CCGC	2 cut(s)	166, 270
AcuI	CTGAAG	1 cut(s)	550
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	4 cut(s)	93, 151, 152, 753
AgsI	TTSAA	2 cut(s)	688, 803
AhdI	GACNNNNNGTC	1 cut(s)	641
AjnI	CCWGG	2 cut(s)	667, 752
AluBI	AGCT	4 cut(s)	605, 693, 760, 791
AluI	AGCT	4 cut(s)	605, 693, 760, 791
Alw26I	GTCTC	2 cut(s)	318, 872
AlwNI	CAGNNNCTG	1 cut(s)	794
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	3 cut(s)	527, 655, 788
AspLEI	GCGC	2 cut(s)	139, 170
AspS9I	GGNCC	3 cut(s)	84, 303, 643
AsuC2I	CCSGG	1 cut(s)	351
AvaII	GGWCC	3 cut(s)	84, 303, 643
BaeGI	GKGCMC	1 cut(s)	731
BanI	GGYRCC	3 cut(s)	67, 96, 353
BbvI	GCAGC	3 cut(s)	514, 642, 800
BccI	CCATC	1 cut(s)	464
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BciT130I	CCWGG	2 cut(s)	669, 754
BclI	TGATCA	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	351
BcoDI	GTCTC	2 cut(s)	318, 872
BfuAI	ACCTGC	2 cut(s)	72, 258
BisI	GCNGC	3 cut(s)	528, 656, 789
BlsI	GCNGC	3 cut(s)	529, 657, 790
Bme1390I	CCNGG	3 cut(s)	351, 669, 754
Bme18I	GGWCC	3 cut(s)	84, 303, 643
BmeRI	GACNNNNNGTC	1 cut(s)	641
BmgT120I	GGNCC	3 cut(s)	84, 303, 643
BmiI	GGNNCC	6 cut(s)	69, 98, 355, 644, 813, 835
BmrFI	CCNGG	3 cut(s)	351, 669, 754
BmsI	GCATC	1 cut(s)	208
BpuMI	CCSGG	1 cut(s)	351
BsaJI	CCNNGG	3 cut(s)	237, 667, 837
BsaWI	WCCGGW	2 cut(s)	808, 830
Bsc4I	CCNNNNNNNGG	4 cut(s)	93, 151, 152, 753
Bse3DI	GCAATG	1 cut(s)	406
BseBI	CCWGG	2 cut(s)	669, 754
BseDI	CCNNGG	3 cut(s)	237, 667, 837
BseGI	GGATG	2 cut(s)	826, 848
BseLI	CCNNNNNNNGG	4 cut(s)	93, 151, 152, 753
BseMI	GCAATG	1 cut(s)	406
BseMII	CTCAG	2 cut(s)	615, 669
BseSI	GKGCMC	1 cut(s)	731
BseXI	GCAGC	3 cut(s)	514, 642, 800
BsgI	GTGCAG	3 cut(s)	143, 576, 724
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	114
BshNI	GGYRCC	3 cut(s)	67, 96, 353
BsiSI	CCGG	3 cut(s)	350, 809, 831
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	4 cut(s)	93, 151, 152, 753
BsmAI	GTCTC	2 cut(s)	318, 872
BsmFI	GGGAC	1 cut(s)	127
BsmI	GAATGC	1 cut(s)	886
BsnI	GGCC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	731
Bsp143I	GATC	3 cut(s)	331, 373, 511
Bsp19I	CCATGG	2 cut(s)	237, 837
BspACI	CCGC	2 cut(s)	166, 270
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	2 cut(s)	614, 670
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	6 cut(s)	69, 98, 355, 644, 813, 835
BspMI	ACCTGC	2 cut(s)	72, 258
BspT107I	GGYRCC	3 cut(s)	67, 96, 353
BsrDI	GCAATG	1 cut(s)	406
BssECI	CCNNGG	3 cut(s)	237, 667, 837
BssMI	GATC	3 cut(s)	331, 373, 511
BssT1I	CCWWGG	2 cut(s)	237, 837
Bst2UI	CCWGG	2 cut(s)	669, 754
Bst4CI	ACNGT	3 cut(s)	184, 639, 784
Bst6I	CTCTTC	1 cut(s)	223
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstC8I	GCNNGC	2 cut(s)	707, 731
BstDEI	CTNAG	2 cut(s)	601, 678
BstDSI	CCRYGG	2 cut(s)	237, 837
BstF5I	GGATG	2 cut(s)	826, 848
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	2 cut(s)	139, 170
BstKTI	GATC	3 cut(s)	334, 376, 514
BstMAI	GTCTC	2 cut(s)	318, 872
BstMBI	GATC	3 cut(s)	331, 373, 511
BstMWI	GCNNNNNNNGC	3 cut(s)	533, 730, 794
BstNI	CCWGG	2 cut(s)	669, 754
BstSCI	CCNGG	3 cut(s)	349, 667, 752
BstSLI	GKGCMC	1 cut(s)	731
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	3 cut(s)	514, 642, 800
BsuRI	GGCC	1 cut(s)	114
BtgI	CCRYGG	2 cut(s)	237, 837
BtsCI	GGATG	2 cut(s)	826, 848
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	2 cut(s)	357, 369
BveI	ACCTGC	2 cut(s)	72, 258
Cac8I	GCNNGC	2 cut(s)	707, 731
CaiI	CAGNNNCTG	1 cut(s)	794
CfoI	GCGC	2 cut(s)	139, 170
Cfr13I	GGNCC	3 cut(s)	84, 303, 643
Csp6I	GTAC	1 cut(s)	385
CviAII	CATG	6 cut(s)	72, 76, 233, 238, 506, 838
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	2 cut(s)	601, 678
DpnI	GATC	3 cut(s)	333, 375, 513
DpnII	GATC	3 cut(s)	331, 373, 511
DriI	GACNNNNNGTC	1 cut(s)	641
Eam1104I	CTCTTC	1 cut(s)	223
Eam1105I	GACNNNNNGTC	1 cut(s)	641
EarI	CTCTTC	1 cut(s)	223
Eco130I	CCWWGG	2 cut(s)	237, 837
Eco47I	GGWCC	3 cut(s)	84, 303, 643
Eco57I	CTGAAG	1 cut(s)	550
EcoRII	CCWGG	2 cut(s)	667, 752
EcoT14I	CCWWGG	2 cut(s)	237, 837
EcoT22I	ATGCAT	2 cut(s)	77, 770
ErhI	CCWWGG	2 cut(s)	237, 837
FaeI	CATG	6 cut(s)	75, 79, 236, 241, 509, 841
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	6 cut(s)	71, 75, 232, 237, 505, 837
FbaI	TGATCA	1 cut(s)	511
FblI	GTMKAC	2 cut(s)	43, 186
Fnu4HI	GCNGC	3 cut(s)	528, 656, 789
FokI	GGATG	2 cut(s)	833, 855
Fsp4HI	GCNGC	3 cut(s)	528, 656, 789
GlaI	GCGC	2 cut(s)	138, 169
GluI	GCNGC	3 cut(s)	528, 656, 789
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	3 cut(s)	350, 809, 831
HhaI	GCGC	2 cut(s)	139, 170
Hin1II	CATG	6 cut(s)	75, 79, 236, 241, 509, 841
Hin6I	GCGC	2 cut(s)	137, 168
HinP1I	GCGC	2 cut(s)	137, 168
HindIII	AAGCTT	1 cut(s)	758
HinfI	GANTC	4 cut(s)	293, 365, 551, 684
HpaII	CCGG	3 cut(s)	350, 809, 831
Hpy166II	GTNNAC	4 cut(s)	44, 187, 496, 718
Hpy188I	TCNGA	5 cut(s)	55, 550, 569, 628, 647
Hpy188III	TCNNGA	2 cut(s)	377, 815
Hpy8I	GTNNAC	4 cut(s)	44, 187, 496, 718
HpyAV	CCTTC	2 cut(s)	52, 555
HpyCH4III	ACNGT	3 cut(s)	184, 639, 784
HpyF10VI	GCNNNNNNNGC	3 cut(s)	533, 730, 794
HpyF3I	CTNAG	2 cut(s)	601, 678
Hsp92II	CATG	6 cut(s)	75, 79, 236, 241, 509, 841
HspAI	GCGC	2 cut(s)	137, 168
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	3 cut(s)	331, 373, 511
LmnI	GCTCC	2 cut(s)	698, 833
Lsp1109I	GCAGC	3 cut(s)	514, 642, 800
LweI	GCATC	1 cut(s)	208
MalI	GATC	3 cut(s)	333, 375, 513
MboI	GATC	3 cut(s)	331, 373, 511
MboII	GAAGA	4 cut(s)	154, 210, 254, 302
MhlI	GDGCHC	1 cut(s)	731
MluCI	AATT	5 cut(s)	208, 226, 278, 579, 660
MmeI	TCCRAC	1 cut(s)	670
MnlI	CCTC	6 cut(s)	10, 156, 266, 673, 785, 811
Mph1103I	ATGCAT	2 cut(s)	77, 770
MseI	TTAA	1 cut(s)	416
MslI	CAYNNNNRTG	1 cut(s)	522
MspA1I	CMGCKG	1 cut(s)	605
MspI	CCGG	3 cut(s)	350, 809, 831
MspR9I	CCNGG	3 cut(s)	351, 669, 754
Mva1269I	GAATGC	1 cut(s)	886
MvaI	CCWGG	2 cut(s)	669, 754
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	3 cut(s)	533, 730, 794
NciI	CCSGG	1 cut(s)	351
NcoI	CCATGG	2 cut(s)	237, 837
NdeII	GATC	3 cut(s)	331, 373, 511
NlaIII	CATG	6 cut(s)	75, 79, 236, 241, 509, 841
NlaIV	GGNNCC	6 cut(s)	69, 98, 355, 644, 813, 835
NsiI	ATGCAT	2 cut(s)	77, 770
PctI	GAATGC	1 cut(s)	886
PfeI	GAWTC	4 cut(s)	293, 365, 551, 684
PflMI	CCANNNNNTGG	1 cut(s)	93
PfoI	TCCNGGA	1 cut(s)	752
PkrI	GCNGC	3 cut(s)	529, 657, 790
Psp6I	CCWGG	2 cut(s)	667, 752
PspGI	CCWGG	2 cut(s)	667, 752
PspN4I	GGNNCC	6 cut(s)	69, 98, 355, 644, 813, 835
PspPI	GGNCC	3 cut(s)	84, 303, 643
PstNI	CAGNNNCTG	1 cut(s)	794
PvuII	CAGCTG	1 cut(s)	605
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
RseI	CAYNNNNRTG	1 cut(s)	522
SaqAI	TTAA	1 cut(s)	416
SatI	GCNGC	3 cut(s)	528, 656, 789
Sau3AI	GATC	3 cut(s)	331, 373, 511
Sau96I	GGNCC	3 cut(s)	84, 303, 643
ScrFI	CCNGG	3 cut(s)	351, 669, 754
SduI	GDGCHC	1 cut(s)	731
SfaNI	GCATC	1 cut(s)	208
SinI	GGWCC	3 cut(s)	84, 303, 643
SmiMI	CAYNNNNRTG	1 cut(s)	522
Sse9I	AATT	5 cut(s)	208, 226, 278, 579, 660
SsiI	CCGC	2 cut(s)	166, 270
StyD4I	CCNGG	3 cut(s)	349, 667, 752
StyI	CCWWGG	2 cut(s)	237, 837
TaaI	ACNGT	3 cut(s)	184, 639, 784
TaqI	TCGA	3 cut(s)	334, 857, 886
TasI	AATT	5 cut(s)	208, 226, 278, 579, 660
TatI	WGTACW	1 cut(s)	384
TfiI	GAWTC	4 cut(s)	293, 365, 551, 684
Tru1I	TTAA	1 cut(s)	416
Tru9I	TTAA	1 cut(s)	416
TscAI	CASTG	2 cut(s)	364, 376
TseI	GCWGC	3 cut(s)	527, 655, 788
TspDTI	ATGAA	5 cut(s)	210, 221, 434, 837, 875
TspRI	CASTG	2 cut(s)	364, 376
Van91I	CCANNNNNTGG	1 cut(s)	93
VpaK11BI	GGWCC	3 cut(s)	84, 303, 643
XmiI	GTMKAC	2 cut(s)	43, 186
Zsp2I	ATGCAT	2 cut(s)	77, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.