Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003804.1

Orthogroup ID

OG0000947

Physical Location & Seq

Genomic Coordinates Reverse (-)

49869 .. 51134

Gene Structure 1266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003804.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

atggggaatttatgcgaggatttgtgggttgagatcttgggtagactgtcatctgagaaagacttggtgccatgcatgagtgtgtccaagttatggcacagaatagcatcagatctttgggtgaggagattttgggcgcagtcgcctcctttgggtgtttacttccgcaccatccggaatccttcgagtcctttcatgctttccatggtggacaaggtgccgtcttatttgcctagcattaattatatctctctatataattatcataacatggatgataacctcaaaagcaccagcggttatcatctctgtacgttatttaatggcctaattgacctgtttgagtgctataagcgaggttggcaattttatcgacattataaacacggtcacgatgatcatgatgatcagtatctacacggctgcaatggattacttctgttattgaaatcgggaacttatcagttttatgtgtgcaatcccattaccacacaacaagtccccgtacctaaagcttgtgtccaccaaaaccatgagcatttttgtgctgccttggcttttgacccttctgaatctccttatcactacagagttgtgaggattgattactctgaatccgtttcatctacctcaaactctgtcatgtttgacatattttcatctatatacggacagtgggttcgacataggttgcaacttgacccaggttttactgaggggtttgaaaaggtaaagctgtgcaggcaatttttttacttgcggggcaagttatatagcttagccatgtcatggaagattttatgcattgacctcaaaactgttgaagcttcagcccttgaacttcctgtcccggaggccaataagaacggagcgatgggatgtcttggggtgtcgatggacgttctctgctatataaagcgtatgccttccagaaagtttcacgatctggtagtttggtactatgatgatcgttgtgaatctagtgaatggactcgcagatataatgttagttgcggcttgttgggttatggaataaagtatcaagggtatgattatgatgatactgtggaaccctatgcaataagtcctagttctgatgtcttgttctttggcactcccgacttgattagttgctaccatctcaaaagcgagaagtacaagcccgtgtgtcatctatctccctctaaaattgtacctgattacttctgggtattgcgtgcttgctttgtacctttctaccagttgggaaatagttgtgaattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

421

Amino Acids

48.92

Weight (kDa)

6.74

Isoelectric Point (pI)

54.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14071 FvH4_1g14191
malus_domestica	MD12G1051600.v1.1 MD12G1211200.v1.1 MD15G1028800.v1.1 MD15G1268400.v1.1
prunus_persica	Prupe.7G151200_v2.0.a1 Prupe.7G151200_v2.0.a1
pyrus_communis	pycom02g12120 pycom12g06960 pycom15g23320
rosa_chinensis	RchiOBHm_Chr2g0102561 RchiOBHm_Chr2g0102901
rosa_laevigata	RLG00000017149 RLG00000017152 RLG00000017154 RLG00000017156 RLG00000017167 RLG00000017168 RLG00000017170 RLG00000017172 RLG00000017173 RLG00000017175 RLG00000028983 RLG00000028984
rosa_multiflora	Rmu_sc0000388.1_g000052 Rmu_sc0000474.1_g000001 Rmu_sc0002077.1_g000009 Rmu_sc0002077.1_g000013 Rmu_sc0003804.1_g000016 Rmu_sc0003804.1_g000017 Rmu_sc0003804.1_g000032 Rmu_sc0005579.1_g000011 Rmu_sc0005881.1_g000007 Rmu_sc0005881.1_g000008 Rmu_sc0006537.1_g000002 Rmu_sc0008034.1_g000006 Rmu_sc0013762.1_g000002
rosa_roxburghii	Rroxscaffold_2G00140470 Rroxscaffold_2G00140500 Rroxscaffold_4G00310850 Rroxscaffold_4G00310900
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108900 Rorug02G0109000 Rorug02G0109100
rosa_samantha	Rh1BG085900 Rh2AG155400 Rh2AG156100 Rh2AG156500 Rh2AG156700 Rh2BG162400 Rh2CG161400 Rh2CG161800 Rh2CG163300 Rh2CG163500 Rh2CG165100 Rh2DG161000 Rh2DG161600 Rh2DG162000 Rh5BG333000
rosa_wichuraiana	Rw2G012160 Rw2G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	381
AccB1I	GGYRCC	2 cut(s)	67, 217
AccB7I	CCANNNNNTGG	2 cut(s)	93, 789
AccI	GTMKAC	1 cut(s)	43
AccIII	TCCGGA	1 cut(s)	174
AciI	CCGC	4 cut(s)	166, 297, 760, 1014
AcsI	RAATTY	2 cut(s)	7, 1259
AcuI	CTGAAG	1 cut(s)	813
AfaI	GTAC	6 cut(s)	313, 507, 959, 1157, 1194, 1230
AfiI	CCNNNNNNNGG	3 cut(s)	93, 152, 789
AgsI	TTSAA	4 cut(s)	448, 725, 824, 839
AjnI	CCWGG	1 cut(s)	703
AloI	GAACNNNNNNTCC	4 cut(s)	663, 695, 831, 863
AluBI	AGCT	4 cut(s)	515, 736, 777, 827
AluI	AGCT	4 cut(s)	515, 736, 777, 827
Aor13HI	TCCGGA	1 cut(s)	174
AoxI	GGCC	2 cut(s)	325, 855
ApeKI	GCWGC	2 cut(s)	423, 548
ApoI	RAATTY	2 cut(s)	7, 1259
ArsI	GACNNNNNNTTYG	2 cut(s)	663, 695
AseI	ATTAAT	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	139
AsuC2I	CCSGG	1 cut(s)	851
AsuHPI	GGTGA	1 cut(s)	133
BanI	GGYRCC	2 cut(s)	67, 217
BbvI	GCAGC	2 cut(s)	410, 535
BccI	CCATC	4 cut(s)	179, 868, 889, 1146
BceAI	ACGGC	2 cut(s)	205, 436
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BciT130I	CCWGG	1 cut(s)	705
BclI	TGATCA	2 cut(s)	397, 406
BcnI	CCSGG	1 cut(s)	851
BfaI	CTAG	3 cut(s)	234, 981, 1089
BfmI	CTRYAG	1 cut(s)	586
BglII	AGATCT	2 cut(s)	33, 112
BisI	GCNGC	3 cut(s)	424, 549, 1015
BlpI	GCTNAGC	1 cut(s)	778
BlsI	GCNGC	3 cut(s)	425, 550, 1016
Bme1390I	CCNGG	2 cut(s)	705, 851
BmiI	GGNNCC	3 cut(s)	69, 219, 1071
BmrFI	CCNGG	2 cut(s)	705, 851
BmsI	GCATC	1 cut(s)	116
Bpu1102I	GCTNAGC	1 cut(s)	778
BpuMI	CCSGG	1 cut(s)	851
BsaBI	GATNNNNATC	1 cut(s)	411
BsaJI	CCNNGG	3 cut(s)	204, 552, 703
BsaWI	WCCGGW	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 152, 789
Bse1I	ACTGG	1 cut(s)	1240
Bse3DI	GCAATG	1 cut(s)	433
Bse8I	GATNNNNATC	1 cut(s)	411
BseAI	TCCGGA	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	705
BseDI	CCNNGG	3 cut(s)	204, 552, 703
BseGI	GGATG	3 cut(s)	171, 280, 884
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	3 cut(s)	93, 152, 789
BseMI	GCAATG	1 cut(s)	433
BseMII	CTCAG	2 cut(s)	45, 705
BseNI	ACTGG	1 cut(s)	1240
BseRI	GAGGAG	1 cut(s)	139
BseXI	GCAGC	2 cut(s)	410, 535
BsgI	GTGCAG	1 cut(s)	760
BshFI	GGCC	2 cut(s)	327, 857
BshNI	GGYRCC	2 cut(s)	67, 217
BsiSI	CCGG	2 cut(s)	175, 851
BslFI	GGGAC	2 cut(s)	485, 833
BslI	CCNNNNNNNGG	3 cut(s)	93, 152, 789
BsmFI	GGGAC	2 cut(s)	485, 833
BsnI	GGCC	2 cut(s)	327, 857
Bsp13I	TCCGGA	1 cut(s)	174
Bsp143I	GATC	6 cut(s)	33, 112, 397, 406, 943, 967
Bsp1720I	GCTNAGC	1 cut(s)	778
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	4 cut(s)	166, 297, 760, 1014
BspANI	GGCC	2 cut(s)	327, 857
BspCNI	CTCAG	2 cut(s)	46, 706
BspEI	TCCGGA	1 cut(s)	174
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	3 cut(s)	69, 219, 1071
BspT107I	GGYRCC	2 cut(s)	67, 217
BsrDI	GCAATG	1 cut(s)	433
BsrI	ACTGG	1 cut(s)	1240
BssECI	CCNNGG	3 cut(s)	204, 552, 703
BssMI	GATC	6 cut(s)	33, 112, 397, 406, 943, 967
BssT1I	CCWWGG	2 cut(s)	204, 552
Bst2UI	CCWGG	1 cut(s)	705
Bst4CI	ACNGT	5 cut(s)	48, 389, 675, 820, 1066
BstC8I	GCNNGC	3 cut(s)	743, 1218, 1222
BstDEI	CTNAG	3 cut(s)	54, 714, 778
BstDSI	CCRYGG	1 cut(s)	204
BstF5I	GGATG	3 cut(s)	171, 280, 884
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	6 cut(s)	36, 115, 400, 409, 946, 970
BstMBI	GATC	6 cut(s)	33, 112, 397, 406, 943, 967
BstMWI	GCNNNNNNNGC	3 cut(s)	361, 554, 742
BstNI	CCWGG	1 cut(s)	705
BstSCI	CCNGG	2 cut(s)	703, 849
BstSFI	CTRYAG	1 cut(s)	586
BstV1I	GCAGC	2 cut(s)	410, 535
BstX2I	RGATCY	2 cut(s)	33, 112
BstYI	RGATCY	2 cut(s)	33, 112
BsuRI	GGCC	2 cut(s)	327, 857
BtgI	CCRYGG	1 cut(s)	204
BtgZI	GCGATG	1 cut(s)	887
BtsCI	GGATG	3 cut(s)	171, 280, 884
BtsIMutI	CAGTG	1 cut(s)	680
Cac8I	GCNNGC	3 cut(s)	743, 1218, 1222
CciI	TCATGA	1 cut(s)	400
CfoI	GCGC	1 cut(s)	139
Csp6I	GTAC	6 cut(s)	312, 506, 958, 1156, 1193, 1229
CviQI	GTAC	6 cut(s)	312, 506, 958, 1156, 1193, 1229
DdeI	CTNAG	3 cut(s)	54, 714, 778
DpnI	GATC	6 cut(s)	35, 114, 399, 408, 945, 969
DpnII	GATC	6 cut(s)	33, 112, 397, 406, 943, 967
Eco130I	CCWWGG	2 cut(s)	204, 552
Eco57I	CTGAAG	1 cut(s)	813
EcoRII	CCWGG	1 cut(s)	703
EcoT14I	CCWWGG	2 cut(s)	204, 552
EcoT22I	ATGCAT	2 cut(s)	77, 806
ErhI	CCWWGG	2 cut(s)	204, 552
FaqI	GGGAC	2 cut(s)	485, 833
FauI	CCCGC	1 cut(s)	753
FbaI	TGATCA	2 cut(s)	397, 406
FblI	GTMKAC	1 cut(s)	43
Fnu4HI	GCNGC	3 cut(s)	424, 549, 1015
FokI	GGATG	3 cut(s)	158, 287, 891
Fsp4HI	GCNGC	3 cut(s)	424, 549, 1015
FspBI	CTAG	3 cut(s)	234, 981, 1089
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	3 cut(s)	424, 549, 1015
HaeIII	GGCC	2 cut(s)	327, 857
HapII	CCGG	2 cut(s)	175, 851
HhaI	GCGC	1 cut(s)	139
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HindIII	AAGCTT	2 cut(s)	513, 825
HinfI	GANTC	6 cut(s)	178, 187, 572, 614, 977, 991
HpaII	CCGG	2 cut(s)	175, 851
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	4 cut(s)	44, 160, 211, 523
Hpy188I	TCNGA	5 cut(s)	55, 112, 571, 613, 1096
Hpy188III	TCNNGA	7 cut(s)	175, 392, 401, 453, 930, 941, 1118
Hpy8I	GTNNAC	4 cut(s)	44, 160, 211, 523
HpyAV	CCTTC	3 cut(s)	192, 576, 936
HpyCH4III	ACNGT	5 cut(s)	48, 389, 675, 820, 1066
HpyCH4IV	ACGT	2 cut(s)	314, 900
HpyCH4V	TGCA	7 cut(s)	75, 426, 477, 694, 741, 804, 1079
HpyF10VI	GCNNNNNNNGC	3 cut(s)	361, 554, 742
HpyF3I	CTNAG	3 cut(s)	54, 714, 778
HpySE526I	ACGT	2 cut(s)	314, 900
HspAI	GCGC	1 cut(s)	137
Kpn2I	TCCGGA	1 cut(s)	174
Ksp22I	TGATCA	2 cut(s)	397, 406
Kzo9I	GATC	6 cut(s)	33, 112, 397, 406, 943, 967
LmnI	GCTCC	1 cut(s)	869
Lsp1109I	GCAGC	2 cut(s)	410, 535
LweI	GCATC	1 cut(s)	116
MaeI	CTAG	3 cut(s)	234, 981, 1089
MaeII	ACGT	2 cut(s)	314, 900
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	6 cut(s)	35, 114, 399, 408, 945, 969
MboI	GATC	6 cut(s)	33, 112, 397, 406, 943, 967
MboII	GAAGA	1 cut(s)	805
MflI	RGATCY	2 cut(s)	33, 112
MluCI	AATT	8 cut(s)	7, 241, 259, 330, 365, 746, 1188, 1259
MlyI	GAGTC	2 cut(s)	196, 985
Mph1103I	ATGCAT	2 cut(s)	77, 806
MroI	TCCGGA	1 cut(s)	174
MseI	TTAA	2 cut(s)	240, 321
MslI	CAYNNNNRTG	2 cut(s)	80, 543
MspA1I	CMGCKG	1 cut(s)	297
MspI	CCGG	2 cut(s)	175, 851
MspR9I	CCNGG	2 cut(s)	705, 851
MvaI	CCWGG	1 cut(s)	705
MwoI	GCNNNNNNNGC	3 cut(s)	361, 554, 742
NciI	CCSGG	1 cut(s)	851
NcoI	CCATGG	1 cut(s)	204
NdeII	GATC	6 cut(s)	33, 112, 397, 406, 943, 967
NlaIV	GGNNCC	3 cut(s)	69, 219, 1071
NmuCI	GTSAC	1 cut(s)	389
NsiI	ATGCAT	2 cut(s)	77, 806
PagI	TCATGA	1 cut(s)	400
PfeI	GAWTC	4 cut(s)	178, 572, 614, 977
PflMI	CCANNNNNTGG	2 cut(s)	93, 789
PfoI	TCCNGGA	1 cut(s)	849
PkrI	GCNGC	3 cut(s)	425, 550, 1016
PleI	GAGTC	2 cut(s)	195, 985
PpsI	GAGTC	2 cut(s)	195, 985
PshBI	ATTAAT	1 cut(s)	240
PsiI	TTATAA	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	703
PspGI	CCWGG	1 cut(s)	703
PspN4I	GGNNCC	3 cut(s)	69, 219, 1071
PsuI	RGATCY	2 cut(s)	33, 112
RsaI	GTAC	6 cut(s)	313, 507, 959, 1157, 1194, 1230
RsaNI	GTAC	6 cut(s)	312, 506, 958, 1156, 1193, 1229
RseI	CAYNNNNRTG	2 cut(s)	80, 543
SaqAI	TTAA	2 cut(s)	240, 321
SatI	GCNGC	3 cut(s)	424, 549, 1015
Sau3AI	GATC	6 cut(s)	33, 112, 397, 406, 943, 967
SchI	GAGTC	2 cut(s)	196, 985
ScrFI	CCNGG	2 cut(s)	705, 851
SfaNI	GCATC	1 cut(s)	116
SfcI	CTRYAG	1 cut(s)	586
SmiMI	CAYNNNNRTG	2 cut(s)	80, 543
Sse9I	AATT	8 cut(s)	7, 241, 259, 330, 365, 746, 1188, 1259
SsiI	CCGC	4 cut(s)	166, 297, 760, 1014
SspMI	CTAG	3 cut(s)	234, 981, 1089
StyD4I	CCNGG	2 cut(s)	703, 849
StyI	CCWWGG	2 cut(s)	204, 552
TaaI	ACNGT	5 cut(s)	48, 389, 675, 820, 1066
TaiI	ACGT	2 cut(s)	317, 903
TaqI	TCGA	4 cut(s)	185, 373, 682, 893
TasI	AATT	8 cut(s)	7, 241, 259, 330, 365, 746, 1188, 1259
TatI	WGTACW	1 cut(s)	1155
TauI	GCSGC	1 cut(s)	1017
TfiI	GAWTC	4 cut(s)	178, 572, 614, 977
Tru1I	TTAA	2 cut(s)	240, 321
Tru9I	TTAA	2 cut(s)	240, 321
TscAI	CASTG	1 cut(s)	680
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	2 cut(s)	423, 548
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	3 cut(s)	184, 612, 648
TspGWI	ACGGA	3 cut(s)	607, 684, 882
TspRI	CASTG	1 cut(s)	680
Van91I	CCANNNNNTGG	2 cut(s)	93, 789
VspI	ATTAAT	1 cut(s)	240
XapI	RAATTY	2 cut(s)	7, 1259
XmiI	GTMKAC	1 cut(s)	43
XspI	CTAG	3 cut(s)	234, 981, 1089
Zsp2I	ATGCAT	2 cut(s)	77, 806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.