Rroxscaffold_4G00310900

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000947
Physical Location & Seq
Forward (+)
33077781 .. 33078935
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00310900.1

Sequence Viewer

Length: 1155 bp
ATGGTGAATCTGTGCGAGGATTTGTTGGCTGAAATATTGCGTAGACTATCGGAGGAGGATCTGCTGAAATGTCAGAGCGTATCCAAGTCATGGCACCCAGTGATCTCACGTCTCTGGGTGCAAAGGTTCTGGACCCTGTCTTCATCGCCTGTTCTGGGTCTTTACTTCCGAACCACGACCGCCGGTGTGGAGCTTTCTCCTTACTTGCAAATGATGAACGGCGGTATGTCATCTCTTGTGAATTACATCTCTTTGTACAATTACAGTTTCCTGGAAGAAAACCTCGAAAGAAACGCATCGAATATGAAGAGAAGCCGGCAGATTTTTCGACACTGGCAACGGGCAGTCGCTGAGGAATATCTTGACTGTTGTAATGGGTTACTTTTGATATATGAGTCCACCAGTCATCAGTTGTACGTCTGCAACCCTATCACCAGAAGACAATTTGCAATACCTAAAGCTTCCGATCACCACCGCAGTGGGCACTTCTGGGCAGCCTTGGCTTTCGACCCTTGTGAATCACCTAGCCACTATAGAGTTGTTCGAGTTGATTATAGTTGTTCCTTTCTCGACATATTTTCATCCCATTCTGGCCGGTGGGTTCGACATAAGCTTGACCCCGACTTCACTGAGCTTTGCCGCGGTCGTTTTGTATATCTACGAGGGATGTTATACAGCATAGCCAGCTCAGGTGAGGAGCTTTTATGCATTCACCTTGATACAACAGTTCAATCCAGGTCTTTTCAACTCCCTGAGTCTGTTAAGTGTCGAACCCACCGATGTCTAGGAGTGTCCATGGACCTTCTCTGTTATTTCTTCCGAGATGATGAGTCAAATATGTTTCATGTTTGGTCTTATGATGATCGCCAATCTTCAGATGAATGGGTTCTAAGATTTAGTATTTCCTGCGAAAAATTGAGATGGCTCATGTTAACTACTCTAGGCTATGACTACCCTGATACCCCTGAAACGTTTGAACCCTATGCAATTAGTCCAAGTTCTGATATTATCTTCTTTGGCACTCCCAGATTGATCTTAAGCTACAACTTTAATACCCTTAAGATCAAATTTGTTTGTAAAACAGGTTTTGACATAGCTGCTTCACCTGTCTTTGCACTACGTGCTTGCTTTTTTACCTCTCTACCAGTTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

384

Amino Acids

44.64

Weight (kDa)

6.63

Isoelectric Point (pI)

56.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 38 9.8e-07 F-box domain
F-box-like PF12937 6 - 41 6.6e-06 F-box-like
FBA_1 PF07734 94 - 286 3e-12 F-box associated beta propeller domain
FBA_3 PF08268 102 - 200 3.9e-06 F-box associated beta propeller domain
Beta-prop_KIB1-4 PF03478 115 - 315 6.9e-08 KIB1-4 beta-propeller
b-prop_At3g26010-like PF24750 119 - 305 3.6e-11 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 93
AccB7I CCANNNNNTGG 1 cut(s) 90
AccI GTMKAC 1 cut(s) 43
AccII CGCG 1 cut(s) 642
AciI CCGC 5 cut(s) 180, 222, 475, 640, 642
AclI AACGTT 1 cut(s) 971
AclWI GGATC 1 cut(s) 66
AcoI YGGCCR 1 cut(s) 592
AcsI RAATTY 1 cut(s) 1067
AcuI CTGAAG 1 cut(s) 858
AdeI CACNNNGTG 2 cut(s) 100, 1121
AfaI GTAC 2 cut(s) 257, 416
AfiI CCNNNNNNNGG 2 cut(s) 90, 155
AflII CTTAAG 2 cut(s) 1036, 1058
AgsI TTSAA 3 cut(s) 731, 746, 977
AjiI CACGTC 1 cut(s) 110
AjnI CCWGG 2 cut(s) 270, 734
AleI CACNNNNGTG 1 cut(s) 477
AluBI AGCT 8 cut(s) 193, 461, 613, 634, 687, 700, 1041, 1097
AluI AGCT 8 cut(s) 193, 461, 613, 634, 687, 700, 1041, 1097
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 1 cut(s) 66
AlwNI CAGNNNCTG 1 cut(s) 350
AoxI GGCC 1 cut(s) 592
ApeKI GCWGC 2 cut(s) 494, 1097
ApoI RAATTY 1 cut(s) 1067
Asp700I GAANNNNTTC 1 cut(s) 885
AspS9I GGNCC 2 cut(s) 132, 799
AsuHPI GGTGA 7 cut(s) 16, 424, 461, 513, 704, 704, 1095
AvaII GGWCC 2 cut(s) 132, 799
BaeGI GKGCMC 1 cut(s) 486
BaeI ACNNNNGTAYC 2 cut(s) 711, 744
BanI GGYRCC 1 cut(s) 93
BbsI GAAGAC 2 cut(s) 132, 445
BbvCI CCTCAGC 1 cut(s) 351
BbvI GCAGC 2 cut(s) 506, 1084
BccI CCATC 1 cut(s) 915
BceAI ACGGC 1 cut(s) 235
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BciT130I CCWGG 2 cut(s) 272, 736
BciVI GTATCC 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 3 cut(s) 525, 785, 941
BfmI CTRYAG 1 cut(s) 532
BfrI CTTAAG 2 cut(s) 1036, 1058
BfuI GTATCC 1 cut(s) 91
BisI GCNGC 3 cut(s) 495, 640, 1098
BlsI GCNGC 3 cut(s) 496, 641, 1099
Bme1390I CCNGG 2 cut(s) 272, 736
Bme18I GGWCC 2 cut(s) 132, 799
BmgBI CACGTC 1 cut(s) 110
BmgT120I GGNCC 2 cut(s) 132, 799
BmiI GGNNCC 2 cut(s) 95, 134
BmrFI CCNGG 2 cut(s) 272, 736
BmrI ACTGGG 1 cut(s) 92
BmsI GCATC 1 cut(s) 305
BmuI ACTGGG 1 cut(s) 92
BpiI GAAGAC 2 cut(s) 132, 445
Bpu10I CCTNAGC 2 cut(s) 351, 688
BsaAI YACGTR 1 cut(s) 1121
BsaJI CCNNGG 3 cut(s) 498, 640, 795
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 155
Bse118I RCCGGY 3 cut(s) 182, 315, 594
Bse1I ACTGG 4 cut(s) 98, 338, 402, 1145
BseBI CCWGG 2 cut(s) 272, 736
BseDI CCNNGG 3 cut(s) 498, 640, 795
BseGI GGATG 2 cut(s) 581, 672
BseLI CCNNNNNNNGG 2 cut(s) 90, 155
BseMII CTCAG 4 cut(s) 342, 621, 702, 744
BseNI ACTGG 4 cut(s) 98, 338, 402, 1145
BseRI GAGGAG 2 cut(s) 68, 710
BseSI GKGCMC 1 cut(s) 486
BseXI GCAGC 2 cut(s) 506, 1084
Bsh1236I CGCG 1 cut(s) 642
Bsh1285I CGRYCG 2 cut(s) 180, 646
BshFI GGCC 1 cut(s) 594
BshNI GGYRCC 1 cut(s) 93
BsiEI CGRYCG 2 cut(s) 180, 646
BsiSI CCGG 3 cut(s) 183, 316, 595
BslI CCNNNNNNNGG 2 cut(s) 90, 155
BsmAI GTCTC 1 cut(s) 116
BsmBI CGTCTC 1 cut(s) 116
BsmI GAATGC 1 cut(s) 708
BsnI GGCC 1 cut(s) 594
Bsp1286I GDGCHC 1 cut(s) 486
Bsp1407I TGTACA 1 cut(s) 255
Bsp143I GATC 6 cut(s) 58, 102, 466, 862, 1032, 1062
Bsp19I CCATGG 1 cut(s) 795
BspACI CCGC 5 cut(s) 180, 222, 475, 640, 642
BspANI GGCC 1 cut(s) 594
BspCNI CTCAG 4 cut(s) 343, 622, 701, 745
BspFNI CGCG 1 cut(s) 642
BspLI GGNNCC 2 cut(s) 95, 134
BspPI GGATC 1 cut(s) 66
BspT107I GGYRCC 1 cut(s) 93
BspTI CTTAAG 2 cut(s) 1036, 1058
BsrFI RCCGGY 3 cut(s) 182, 315, 594
BsrGI TGTACA 1 cut(s) 255
BsrI ACTGG 4 cut(s) 98, 338, 402, 1145
BssAI RCCGGY 3 cut(s) 182, 315, 594
BssECI CCNNGG 3 cut(s) 498, 640, 795
BssMI GATC 6 cut(s) 58, 102, 466, 862, 1032, 1062
BssT1I CCWWGG 2 cut(s) 498, 795
Bst2UI CCWGG 2 cut(s) 272, 736
Bst4CI ACNGT 3 cut(s) 266, 368, 727
Bst6I CTCTTC 1 cut(s) 302
BstAFI CTTAAG 2 cut(s) 1036, 1058
BstAPI GCANNNNNTGC 1 cut(s) 1121
BstAUI TGTACA 1 cut(s) 255
BstBAI YACGTR 1 cut(s) 1121
BstC8I GCNNGC 3 cut(s) 317, 685, 1126
BstDEI CTNAG 5 cut(s) 351, 630, 688, 753, 890
BstDSI CCRYGG 2 cut(s) 640, 795
BstF5I GGATG 2 cut(s) 581, 672
BstFNI CGCG 1 cut(s) 642
BstKTI GATC 6 cut(s) 61, 105, 469, 865, 1035, 1065
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 6 cut(s) 58, 102, 466, 862, 1032, 1062
BstMCI CGRYCG 2 cut(s) 180, 646
BstMWI GCNNNNNNNGC 3 cut(s) 500, 684, 1121
BstNI CCWGG 2 cut(s) 272, 736
BstSCI CCNGG 2 cut(s) 270, 734
BstSFI CTRYAG 1 cut(s) 532
BstSLI GKGCMC 1 cut(s) 486
BstUI CGCG 1 cut(s) 642
BstV1I GCAGC 2 cut(s) 506, 1084
BstV2I GAAGAC 2 cut(s) 132, 445
BstX2I RGATCY 1 cut(s) 58
BstXI CCANNNNNNTGG 1 cut(s) 479
BstYI RGATCY 1 cut(s) 58
BsuI GTATCC 1 cut(s) 91
BsuRI GGCC 1 cut(s) 594
BtgI CCRYGG 2 cut(s) 640, 795
BtgZI GCGATG 1 cut(s) 129
BtrI CACGTC 1 cut(s) 110
BtsCI GGATG 2 cut(s) 581, 672
BtsI GCAGTG 1 cut(s) 484
BtsIMutI CAGTG 4 cut(s) 105, 331, 484, 627
Cac8I GCNNGC 3 cut(s) 317, 685, 1126
CaiI CAGNNNCTG 1 cut(s) 350
Cfr10I RCCGGY 3 cut(s) 182, 315, 594
Cfr13I GGNCC 2 cut(s) 132, 799
Cfr42I CCGCGG 1 cut(s) 643
Csp6I GTAC 2 cut(s) 256, 415
CviAII CATG 4 cut(s) 90, 796, 845, 928
CviQI GTAC 2 cut(s) 256, 415
DdeI CTNAG 5 cut(s) 351, 630, 688, 753, 890
DpnI GATC 6 cut(s) 60, 104, 468, 864, 1034, 1064
DpnII GATC 6 cut(s) 58, 102, 466, 862, 1032, 1062
DraIII CACNNNGTG 2 cut(s) 100, 1121
EaeI YGGCCR 1 cut(s) 592
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
Eco130I CCWWGG 2 cut(s) 498, 795
Eco47I GGWCC 2 cut(s) 132, 799
Eco57I CTGAAG 1 cut(s) 858
EcoRII CCWGG 2 cut(s) 270, 734
EcoT14I CCWWGG 2 cut(s) 498, 795
EcoT22I ATGCAT 1 cut(s) 710
ErhI CCWWGG 2 cut(s) 498, 795
Esp3I CGTCTC 1 cut(s) 116
FaeI CATG 4 cut(s) 93, 799, 848, 931
FatI CATG 4 cut(s) 89, 795, 844, 927
FblI GTMKAC 1 cut(s) 43
Fnu4HI GCNGC 3 cut(s) 495, 640, 1098
FokI GGATG 2 cut(s) 568, 679
Fsp4HI GCNGC 3 cut(s) 495, 640, 1098
FspBI CTAG 3 cut(s) 525, 785, 941
GluI GCNGC 3 cut(s) 495, 640, 1098
HaeIII GGCC 1 cut(s) 594
HapII CCGG 3 cut(s) 183, 316, 595
Hin1II CATG 4 cut(s) 93, 799, 848, 931
HincII GTYRAC 1 cut(s) 933
HindII GTYRAC 1 cut(s) 933
HindIII AAGCTT 2 cut(s) 459, 611
HinfI GANTC 5 cut(s) 7, 395, 518, 755, 830
HpaI GTTAAC 1 cut(s) 933
HpaII CCGG 3 cut(s) 183, 316, 595
HphI GGTGA 7 cut(s) 16, 424, 461, 513, 704, 704, 1095
Hpy166II GTNNAC 3 cut(s) 44, 399, 933
Hpy188I TCNGA 7 cut(s) 52, 75, 170, 466, 821, 877, 1003
Hpy188III TCNNGA 3 cut(s) 130, 362, 569
Hpy8I GTNNAC 3 cut(s) 44, 399, 933
HpyAV CCTTC 1 cut(s) 812
HpyCH4III ACNGT 3 cut(s) 266, 368, 727
HpyCH4IV ACGT 4 cut(s) 109, 417, 971, 1120
HpyCH4V TGCA 7 cut(s) 121, 208, 423, 449, 708, 986, 1115
HpyF10VI GCNNNNNNNGC 3 cut(s) 500, 684, 1121
HpyF3I CTNAG 5 cut(s) 351, 630, 688, 753, 890
HpySE526I ACGT 4 cut(s) 109, 417, 971, 1120
Hsp92II CATG 4 cut(s) 93, 799, 848, 931
KroI GCCGGC 1 cut(s) 315
KroNI GCCGGC 1 cut(s) 317
KspAI GTTAAC 1 cut(s) 933
KspI CCGCGG 1 cut(s) 643
Kzo9I GATC 6 cut(s) 58, 102, 466, 862, 1032, 1062
LmnI GCTCC 2 cut(s) 190, 697
Lsp1109I GCAGC 2 cut(s) 506, 1084
LweI GCATC 1 cut(s) 305
MaeI CTAG 3 cut(s) 525, 785, 941
MaeII ACGT 4 cut(s) 109, 417, 971, 1120
MaeIII GTNAC 1 cut(s) 378
MalI GATC 6 cut(s) 60, 104, 468, 864, 1034, 1064
MboI GATC 6 cut(s) 58, 102, 466, 862, 1032, 1062
MboII GAAGA 7 cut(s) 132, 287, 319, 450, 808, 864, 1003
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 486
MluCI AATT 6 cut(s) 241, 259, 443, 914, 987, 1067
MlyI GAGTC 3 cut(s) 404, 764, 839
MnlI CCTC 8 cut(s) 10, 46, 49, 293, 346, 656, 688, 1147
Mph1103I ATGCAT 1 cut(s) 710
MroNI GCCGGC 1 cut(s) 315
MroXI GAANNNNTTC 1 cut(s) 885
MseI TTAA 5 cut(s) 762, 932, 1037, 1050, 1059
MslI CAYNNNNRTG 1 cut(s) 477
MspA1I CMGCKG 1 cut(s) 642
MspCI CTTAAG 2 cut(s) 1036, 1058
MspI CCGG 3 cut(s) 183, 316, 595
MspR9I CCNGG 2 cut(s) 272, 736
Mva1269I GAATGC 1 cut(s) 708
MvaI CCWGG 2 cut(s) 272, 736
MvnI CGCG 1 cut(s) 642
MwoI GCNNNNNNNGC 3 cut(s) 500, 684, 1121
NaeI GCCGGC 1 cut(s) 317
NcoI CCATGG 1 cut(s) 795
NdeII GATC 6 cut(s) 58, 102, 466, 862, 1032, 1062
NgoMIV GCCGGC 1 cut(s) 315
NlaIII CATG 4 cut(s) 93, 799, 848, 931
NlaIV GGNNCC 2 cut(s) 95, 134
NsiI ATGCAT 1 cut(s) 710
OliI CACNNNNGTG 1 cut(s) 477
PcsI WCGNNNNNNNCGW 1 cut(s) 775
PctI GAATGC 1 cut(s) 708
PdiI GCCGGC 1 cut(s) 317
PdmI GAANNNNTTC 1 cut(s) 885
PfeI GAWTC 2 cut(s) 7, 518
PflFI GACNNNGTC 1 cut(s) 136
PflMI CCANNNNNTGG 1 cut(s) 90
PfoI TCCNGGA 1 cut(s) 270
PkrI GCNGC 3 cut(s) 496, 641, 1099
PleI GAGTC 3 cut(s) 403, 763, 838
PpsI GAGTC 3 cut(s) 403, 763, 838
Ppu21I YACGTR 1 cut(s) 1121
Psp1406I AACGTT 1 cut(s) 971
Psp6I CCWGG 2 cut(s) 270, 734
PspGI CCWGG 2 cut(s) 270, 734
PspN4I GGNNCC 2 cut(s) 95, 134
PspPI GGNCC 2 cut(s) 132, 799
PstNI CAGNNNCTG 1 cut(s) 350
PsuI RGATCY 1 cut(s) 58
PsyI GACNNNGTC 1 cut(s) 136
RsaI GTAC 2 cut(s) 257, 416
RsaNI GTAC 2 cut(s) 256, 415
RseI CAYNNNNRTG 1 cut(s) 477
SacII CCGCGG 1 cut(s) 643
SaqAI TTAA 5 cut(s) 762, 932, 1037, 1050, 1059
SatI GCNGC 3 cut(s) 495, 640, 1098
Sau3AI GATC 6 cut(s) 58, 102, 466, 862, 1032, 1062
Sau96I GGNCC 2 cut(s) 132, 799
SchI GAGTC 3 cut(s) 404, 764, 839
ScrFI CCNGG 2 cut(s) 272, 736
SduI GDGCHC 1 cut(s) 486
SfaNI GCATC 1 cut(s) 305
SfcI CTRYAG 1 cut(s) 532
Sfr303I CCGCGG 1 cut(s) 643
SgrAI CRCCGGYG 1 cut(s) 182
SgrBI CCGCGG 1 cut(s) 643
SinI GGWCC 2 cut(s) 132, 799
SmiMI CAYNNNNRTG 1 cut(s) 477
SmlI CTYRAG 2 cut(s) 1036, 1058
SmoI CTYRAG 2 cut(s) 1036, 1058
Sse9I AATT 6 cut(s) 241, 259, 443, 914, 987, 1067
SsiI CCGC 5 cut(s) 180, 222, 475, 640, 642
SspI AATATT 1 cut(s) 36
SspMI CTAG 3 cut(s) 525, 785, 941
StyD4I CCNGG 2 cut(s) 270, 734
StyI CCWWGG 2 cut(s) 498, 795
TaaI ACNGT 3 cut(s) 266, 368, 727
TaiI ACGT 4 cut(s) 112, 420, 974, 1123
TaqI TCGA 8 cut(s) 285, 299, 328, 507, 544, 570, 604, 769
TasI AATT 6 cut(s) 241, 259, 443, 914, 987, 1067
TatI WGTACW 1 cut(s) 255
TauI GCSGC 1 cut(s) 642
TfiI GAWTC 2 cut(s) 7, 518
Tru1I TTAA 5 cut(s) 762, 932, 1037, 1050, 1059
Tru9I TTAA 5 cut(s) 762, 932, 1037, 1050, 1059
TscAI CASTG 4 cut(s) 105, 338, 484, 634
TseI GCWGC 2 cut(s) 494, 1097
TspDTI ATGAA 6 cut(s) 132, 230, 320, 570, 833, 894
TspRI CASTG 4 cut(s) 105, 338, 484, 634
Tth111I GACNNNGTC 1 cut(s) 136
Van91I CCANNNNNTGG 1 cut(s) 90
Vha464I CTTAAG 2 cut(s) 1036, 1058
VpaK11BI GGWCC 2 cut(s) 132, 799
XapI RAATTY 1 cut(s) 1067
XmiI GTMKAC 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 885
XspI CTAG 3 cut(s) 525, 785, 941
Zsp2I ATGCAT 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.