Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000947

Physical Location & Seq

Genomic Coordinates Forward (+)

14601025 .. 14635525

Gene Structure 34501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG156500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGGGAATTTATGCGAGGATTTGTGGGTTGAGATCTTGGGTAGACTGTCATCTGAGAAAGACTTGGTGCCATGCATGAGTGTGTCCAAGTTATGGCACAGAATAGCATCAGATCTTTGGGTGAGGAGATTTTGGGCACAGTCGCCTCCTTTGGGTGTTTACTTCCGCACCATCCAGAATCCTTCGAGTCCTTTCATGCTCACCATGGTGGACAAGGTGCCGTCTTATTTGCCTAGCATTAATTATATCTCTCTATATAATTATCATAACATGGATGATAACCTCGAAAGCACTAGCGGTTATCATCTCTGTACGTTATTTAATGGCGTAATTGACCTGTTTGAGTGCTATAAGCGAGTTTGGCAATTTTATCGACATTATAAACACGGTCACGATGATCATGATGATCAGTATCTACACGGCTGCAATGGATTGCTTCTGTTATTGAAATCGAGAACTTATCAGTTTTATGTGTGCAATCCCATCACCACACAACAAGTCCCCGTACCTAAAGCTTGTGTCCACCAAAACCATGAGCAGTTTTGTGCTGCCTTGGCTTTTGATCCTTCTGAATCTCCTCGGCACTACAGAGTTGTGAGGATTGATTACTCTGAATCCGTTTCATCTACCTCAAACTCTGTCATGTTTGACATATTTTCATCTATATACGGACAGTGGGTTCGACATAGGTTGCAACTTGACCCAGGTTTTACTGAGGGGTTTGAAAAGGTAAAGCTGTGCAGGCAATTTTTTTACTTGCGGGGCAAGTTATATAGCTTAGCCATGTCATGGAAGATTTTATGCATTGACCTCAAAACTGTTGAAGCTTCAGCCCTTGAACTTCCTGTCCCGGAGGCCAATAAGAACGGAGCGATGGGATGTCTTGGGGTGTCGATGGACCTTCTCTGCTATATAAAGCGAGCAGCCAGGGGCTCGATCTGTTATTCCATCAAATGTCAAGTTAAAACGTTCCTTTACTTTCCAAAGGTTTCTCTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

333

Amino Acids

38.56

Weight (kDa)

8.31

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	6 - 44	9e-07	F-box-like
b-prop_At3g26010-like	PF24750	131 - 310	1.8e-09	F-box protein At3g26010-like, beta-propeller
Beta-prop_KIB1-4	PF03478	136 - 288	6.9e-07	KIB1-4 beta-propeller
FBA_1	PF07734	137 - 292	1.3e-08	F-box associated beta propeller domain
Beta-prop_AT5G49610-like	PF23635	142 - 282	3.9e-06	F-box protein AT5G49610-like, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14071 FvH4_1g14191
malus_domestica	MD12G1051600.v1.1 MD12G1211200.v1.1 MD15G1028800.v1.1 MD15G1268400.v1.1
prunus_persica	Prupe.7G151200_v2.0.a1 Prupe.7G151200_v2.0.a1
pyrus_communis	pycom02g12120 pycom12g06960 pycom15g23320
rosa_chinensis	RchiOBHm_Chr2g0102561 RchiOBHm_Chr2g0102901
rosa_laevigata	RLG00000017149 RLG00000017152 RLG00000017154 RLG00000017156 RLG00000017167 RLG00000017168 RLG00000017170 RLG00000017172 RLG00000017173 RLG00000017175 RLG00000028983 RLG00000028984
rosa_multiflora	Rmu_sc0000388.1_g000052 Rmu_sc0000474.1_g000001 Rmu_sc0002077.1_g000009 Rmu_sc0002077.1_g000013 Rmu_sc0003804.1_g000016 Rmu_sc0003804.1_g000017 Rmu_sc0003804.1_g000032 Rmu_sc0005579.1_g000011 Rmu_sc0005881.1_g000007 Rmu_sc0005881.1_g000008 Rmu_sc0006537.1_g000002 Rmu_sc0008034.1_g000006 Rmu_sc0013762.1_g000002
rosa_roxburghii	Rroxscaffold_2G00140470 Rroxscaffold_2G00140500 Rroxscaffold_4G00310850 Rroxscaffold_4G00310900
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108900 Rorug02G0109000 Rorug02G0109100
rosa_samantha	Rh1BG085900 Rh2AG155400 Rh2AG156100 Rh2AG156500 Rh2AG156700 Rh2BG162400 Rh2CG161400 Rh2CG161800 Rh2CG163300 Rh2CG163500 Rh2CG165100 Rh2DG161000 Rh2DG161600 Rh2DG162000 Rh5BG333000
rosa_wichuraiana	Rw2G012160 Rw2G012350

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	381
AccB1I	GGYRCC	2 cut(s)	67, 217
AccB7I	CCANNNNNTGG	2 cut(s)	93, 789
AccI	GTMKAC	1 cut(s)	43
AciI	CCGC	3 cut(s)	166, 297, 760
AclI	AACGTT	1 cut(s)	968
AclWI	GGATC	1 cut(s)	557
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	1 cut(s)	813
AfaI	GTAC	2 cut(s)	313, 507
AfiI	CCNNNNNNNGG	3 cut(s)	93, 152, 789
AgsI	TTSAA	4 cut(s)	448, 725, 824, 839
AjnI	CCWGG	2 cut(s)	703, 926
AleI	CACNNNNGTG	1 cut(s)	206
AloI	GAACNNNNNNTCC	4 cut(s)	663, 695, 831, 863
AluBI	AGCT	4 cut(s)	515, 736, 777, 827
AluI	AGCT	4 cut(s)	515, 736, 777, 827
AlwI	GGATC	1 cut(s)	557
AoxI	GGCC	1 cut(s)	855
ApeKI	GCWGC	3 cut(s)	423, 548, 923
ApoI	RAATTY	1 cut(s)	7
ArsI	GACNNNNNNTTYG	2 cut(s)	663, 695
AseI	ATTAAT	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	898
AsuC2I	CCSGG	1 cut(s)	851
AsuHPI	GGTGA	3 cut(s)	133, 193, 478
AvaII	GGWCC	1 cut(s)	898
BaeGI	GKGCMC	1 cut(s)	139
BanI	GGYRCC	2 cut(s)	67, 217
BanII	GRGCYC	1 cut(s)	935
BbvI	GCAGC	3 cut(s)	410, 535, 935
BccI	CCATC	5 cut(s)	179, 491, 868, 889, 956
BceAI	ACGGC	2 cut(s)	205, 436
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BciT130I	CCWGG	2 cut(s)	705, 928
BclI	TGATCA	2 cut(s)	397, 406
BcnI	CCSGG	1 cut(s)	851
BfaI	CTAG	2 cut(s)	234, 294
BfmI	CTRYAG	1 cut(s)	586
BglII	AGATCT	2 cut(s)	33, 112
BisI	GCNGC	3 cut(s)	424, 549, 924
BlpI	GCTNAGC	1 cut(s)	778
BlsI	GCNGC	3 cut(s)	425, 550, 925
Bme1390I	CCNGG	3 cut(s)	705, 851, 928
Bme18I	GGWCC	1 cut(s)	898
BmgT120I	GGNCC	1 cut(s)	898
BmiI	GGNNCC	2 cut(s)	69, 219
BmrFI	CCNGG	3 cut(s)	705, 851, 928
BmsI	GCATC	1 cut(s)	116
Bpu1102I	GCTNAGC	1 cut(s)	778
BpuMI	CCSGG	1 cut(s)	851
BsaBI	GATNNNNATC	1 cut(s)	411
BsaJI	CCNNGG	5 cut(s)	204, 552, 578, 703, 927
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 152, 789
Bse3DI	GCAATG	1 cut(s)	433
Bse8I	GATNNNNATC	1 cut(s)	411
BseBI	CCWGG	2 cut(s)	705, 928
BseDI	CCNNGG	5 cut(s)	204, 552, 578, 703, 927
BseGI	GGATG	3 cut(s)	171, 280, 884
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	3 cut(s)	93, 152, 789
BseMI	GCAATG	1 cut(s)	433
BseMII	CTCAG	2 cut(s)	45, 705
BseRI	GAGGAG	2 cut(s)	139, 567
BseSI	GKGCMC	1 cut(s)	139
BseXI	GCAGC	3 cut(s)	410, 535, 935
BsgI	GTGCAG	1 cut(s)	760
BshFI	GGCC	1 cut(s)	857
BshNI	GGYRCC	2 cut(s)	67, 217
BsiSI	CCGG	1 cut(s)	851
BslFI	GGGAC	2 cut(s)	485, 833
BslI	CCNNNNNNNGG	3 cut(s)	93, 152, 789
BsmFI	GGGAC	2 cut(s)	485, 833
BsnI	GGCC	1 cut(s)	857
Bsp1286I	GDGCHC	2 cut(s)	139, 935
Bsp143I	GATC	6 cut(s)	33, 112, 397, 406, 562, 936
Bsp1720I	GCTNAGC	1 cut(s)	778
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	3 cut(s)	166, 297, 760
BspANI	GGCC	1 cut(s)	857
BspCNI	CTCAG	2 cut(s)	46, 706
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	2 cut(s)	69, 219
BspPI	GGATC	1 cut(s)	557
BspT107I	GGYRCC	2 cut(s)	67, 217
BsrDI	GCAATG	1 cut(s)	433
BssECI	CCNNGG	5 cut(s)	204, 552, 578, 703, 927
BssMI	GATC	6 cut(s)	33, 112, 397, 406, 562, 936
BssT1I	CCWWGG	2 cut(s)	204, 552
Bst2UI	CCWGG	2 cut(s)	705, 928
Bst4CI	ACNGT	5 cut(s)	48, 141, 389, 675, 820
BstC8I	GCNNGC	2 cut(s)	743, 921
BstDEI	CTNAG	3 cut(s)	54, 714, 778
BstDSI	CCRYGG	1 cut(s)	204
BstF5I	GGATG	3 cut(s)	171, 280, 884
BstKTI	GATC	6 cut(s)	36, 115, 400, 409, 565, 939
BstMBI	GATC	6 cut(s)	33, 112, 397, 406, 562, 936
BstMWI	GCNNNNNNNGC	3 cut(s)	361, 554, 742
BstNI	CCWGG	2 cut(s)	705, 928
BstSCI	CCNGG	3 cut(s)	703, 849, 926
BstSFI	CTRYAG	1 cut(s)	586
BstSLI	GKGCMC	1 cut(s)	139
BstV1I	GCAGC	3 cut(s)	410, 535, 935
BstX2I	RGATCY	2 cut(s)	33, 112
BstYI	RGATCY	2 cut(s)	33, 112
BsuRI	GGCC	1 cut(s)	857
BtgI	CCRYGG	1 cut(s)	204
BtgZI	GCGATG	1 cut(s)	887
BtsCI	GGATG	3 cut(s)	171, 280, 884
BtsIMutI	CAGTG	1 cut(s)	680
Cac8I	GCNNGC	2 cut(s)	743, 921
CciI	TCATGA	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	898
Csp6I	GTAC	2 cut(s)	312, 506
CviQI	GTAC	2 cut(s)	312, 506
DdeI	CTNAG	3 cut(s)	54, 714, 778
DpnI	GATC	6 cut(s)	35, 114, 399, 408, 564, 938
DpnII	GATC	6 cut(s)	33, 112, 397, 406, 562, 936
Eco130I	CCWWGG	2 cut(s)	204, 552
Eco24I	GRGCYC	1 cut(s)	935
Eco47I	GGWCC	1 cut(s)	898
Eco57I	CTGAAG	1 cut(s)	813
EcoRII	CCWGG	2 cut(s)	703, 926
EcoT14I	CCWWGG	2 cut(s)	204, 552
EcoT22I	ATGCAT	2 cut(s)	77, 806
EcoT38I	GRGCYC	1 cut(s)	935
ErhI	CCWWGG	2 cut(s)	204, 552
FaqI	GGGAC	2 cut(s)	485, 833
FauI	CCCGC	1 cut(s)	753
FbaI	TGATCA	2 cut(s)	397, 406
FblI	GTMKAC	1 cut(s)	43
Fnu4HI	GCNGC	3 cut(s)	424, 549, 924
FokI	GGATG	3 cut(s)	158, 287, 891
FriOI	GRGCYC	1 cut(s)	935
Fsp4HI	GCNGC	3 cut(s)	424, 549, 924
FspBI	CTAG	2 cut(s)	234, 294
GluI	GCNGC	3 cut(s)	424, 549, 924
HaeIII	GGCC	1 cut(s)	857
HapII	CCGG	1 cut(s)	851
HindIII	AAGCTT	2 cut(s)	513, 825
HinfI	GANTC	4 cut(s)	178, 187, 572, 614
HpaII	CCGG	1 cut(s)	851
HphI	GGTGA	3 cut(s)	133, 193, 478
Hpy166II	GTNNAC	4 cut(s)	44, 160, 211, 523
Hpy188I	TCNGA	5 cut(s)	55, 112, 571, 613, 996
Hpy188III	TCNNGA	4 cut(s)	175, 392, 401, 453
Hpy8I	GTNNAC	4 cut(s)	44, 160, 211, 523
HpyAV	CCTTC	3 cut(s)	192, 576, 911
HpyCH4III	ACNGT	5 cut(s)	48, 141, 389, 675, 820
HpyCH4IV	ACGT	2 cut(s)	314, 968
HpyCH4V	TGCA	6 cut(s)	75, 426, 477, 694, 741, 804
HpyF10VI	GCNNNNNNNGC	3 cut(s)	361, 554, 742
HpyF3I	CTNAG	3 cut(s)	54, 714, 778
HpySE526I	ACGT	2 cut(s)	314, 968
Ksp22I	TGATCA	2 cut(s)	397, 406
Kzo9I	GATC	6 cut(s)	33, 112, 397, 406, 562, 936
LmnI	GCTCC	1 cut(s)	869
LpnPI	CCDG	9 cut(s)	188, 350, 690, 717, 727, 858, 864, 913, 940
Lsp1109I	GCAGC	3 cut(s)	410, 535, 935
LweI	GCATC	1 cut(s)	116
MaeI	CTAG	2 cut(s)	234, 294
MaeII	ACGT	2 cut(s)	314, 968
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	6 cut(s)	35, 114, 399, 408, 564, 938
MboI	GATC	6 cut(s)	33, 112, 397, 406, 562, 936
MboII	GAAGA	1 cut(s)	805
MflI	RGATCY	2 cut(s)	33, 112
MhlI	GDGCHC	2 cut(s)	139, 935
MluCI	AATT	6 cut(s)	7, 241, 259, 330, 365, 746
MlyI	GAGTC	1 cut(s)	196
Mph1103I	ATGCAT	2 cut(s)	77, 806
MseI	TTAA	3 cut(s)	240, 321, 963
MslI	CAYNNNNRTG	2 cut(s)	80, 206
MspI	CCGG	1 cut(s)	851
MspR9I	CCNGG	3 cut(s)	705, 851, 928
MvaI	CCWGG	2 cut(s)	705, 928
MwoI	GCNNNNNNNGC	3 cut(s)	361, 554, 742
NciI	CCSGG	1 cut(s)	851
NcoI	CCATGG	1 cut(s)	204
NdeII	GATC	6 cut(s)	33, 112, 397, 406, 562, 936
NlaIV	GGNNCC	2 cut(s)	69, 219
NmeAIII	GCCGAG	1 cut(s)	559
NmuCI	GTSAC	1 cut(s)	389
NsiI	ATGCAT	2 cut(s)	77, 806
OliI	CACNNNNGTG	1 cut(s)	206
PagI	TCATGA	1 cut(s)	400
PfeI	GAWTC	3 cut(s)	178, 572, 614
PflMI	CCANNNNNTGG	2 cut(s)	93, 789
PfoI	TCCNGGA	1 cut(s)	849
PkrI	GCNGC	3 cut(s)	425, 550, 925
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
PshBI	ATTAAT	1 cut(s)	240
PsiI	TTATAA	1 cut(s)	381
Psp1406I	AACGTT	1 cut(s)	968
Psp6I	CCWGG	2 cut(s)	703, 926
PspGI	CCWGG	2 cut(s)	703, 926
PspN4I	GGNNCC	2 cut(s)	69, 219
PspPI	GGNCC	1 cut(s)	898
PsuI	RGATCY	2 cut(s)	33, 112
RsaI	GTAC	2 cut(s)	313, 507
RsaNI	GTAC	2 cut(s)	312, 506
RseI	CAYNNNNRTG	2 cut(s)	80, 206
SaqAI	TTAA	3 cut(s)	240, 321, 963
SatI	GCNGC	3 cut(s)	424, 549, 924
Sau3AI	GATC	6 cut(s)	33, 112, 397, 406, 562, 936
Sau96I	GGNCC	1 cut(s)	898
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	3 cut(s)	705, 851, 928
SduI	GDGCHC	2 cut(s)	139, 935
SfaNI	GCATC	1 cut(s)	116
SfcI	CTRYAG	1 cut(s)	586
SinI	GGWCC	1 cut(s)	898
SmiMI	CAYNNNNRTG	2 cut(s)	80, 206
Sse9I	AATT	6 cut(s)	7, 241, 259, 330, 365, 746
SsiI	CCGC	3 cut(s)	166, 297, 760
SspMI	CTAG	2 cut(s)	234, 294
StyD4I	CCNGG	3 cut(s)	703, 849, 926
StyI	CCWWGG	2 cut(s)	204, 552
TaaI	ACNGT	5 cut(s)	48, 141, 389, 675, 820
TaiI	ACGT	2 cut(s)	317, 971
TaqI	TCGA	7 cut(s)	185, 285, 373, 452, 682, 893, 935
TasI	AATT	6 cut(s)	7, 241, 259, 330, 365, 746
TfiI	GAWTC	3 cut(s)	178, 572, 614
Tru1I	TTAA	3 cut(s)	240, 321, 963
Tru9I	TTAA	3 cut(s)	240, 321, 963
TscAI	CASTG	1 cut(s)	680
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	3 cut(s)	423, 548, 923
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	3 cut(s)	184, 612, 648
TspGWI	ACGGA	3 cut(s)	607, 684, 882
TspRI	CASTG	1 cut(s)	680
Van91I	CCANNNNNTGG	2 cut(s)	93, 789
VpaK11BI	GGWCC	1 cut(s)	898
VspI	ATTAAT	1 cut(s)	240
XapI	RAATTY	1 cut(s)	7
XmiI	GTMKAC	1 cut(s)	43
XspI	CTAG	2 cut(s)	234, 294
Zsp2I	ATGCAT	2 cut(s)	77, 806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.