Rh2DG161600

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000947
Physical Location & Seq
Forward (+)
13850831 .. 13851967
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG161600.1

Sequence Viewer

Length: 615 bp
ATGGGATGTCTCGGTGTGTCGATGGACCTTCTATGCTATATAAAGCGTATGCATGATACTTCTGATGATCTGCACGATCTGGTAGTTTGGTACTACGATGATCGTTGTGAATCTGGTGAATGGATTCTTAGATATAGTGTTTCTTGCTGCTTGTTGGGATGTGCAATTAAGTATCAAGGGTTTAAGTATGATGATACCGTGGAGCCTTATGCTATAAGTTCAAGTTCTGATGTTTTGTTCTTTGGCACTTCCAATTTGATTTGTTGCTACCATCTCAAAAGCGAAAAGATCAAATTCGTGTGTCATGCCGATTGCTGTACAATAGATACACCTGGTAATTTCTGGATATTGCGTGCTTTCTTCGTACCTTTCTTCCAGTTCCGAAAGAGAAATAGCGGTTCTACTCTCTTACCAATGGTTTCAGAGGACACAGAGATTTTGACTGCAGAAACAGTATGTGAAGAAATGAAAGATGATGAATATGTTGAAGTGATAAACGTTAATTTATGTGATCGTCATCAAGAGCCATTGCCGCCGTTTATTTATCCTAGTGAAATTACTGAAATGCATGTGGAGTTTAGTCATCCGGAGACTTCAAGTTCCGATGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

204

Amino Acids

23.54

Weight (kDa)

4.52

Isoelectric Point (pI)

53.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 586
AciI CCGC 2 cut(s) 396, 533
AclI AACGTT 1 cut(s) 498
AcsI RAATTY 1 cut(s) 293
AfaI GTAC 3 cut(s) 92, 319, 366
AgsI TTSAA 3 cut(s) 222, 488, 597
AjnI CCWGG 1 cut(s) 331
Alw26I GTCTC 2 cut(s) 14, 584
Aor13HI TCCGGA 1 cut(s) 586
ApeKI GCWGC 1 cut(s) 147
ApoI RAATTY 1 cut(s) 293
Asp700I GAANNNNTTC 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 128
AvaII GGWCC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 134
BccI CCATC 2 cut(s) 16, 279
BceAI ACGGC 1 cut(s) 520
BciT130I CCWGG 1 cut(s) 333
BcoDI GTCTC 2 cut(s) 14, 584
BfaI CTAG 1 cut(s) 549
BfmI CTRYAG 1 cut(s) 444
BisI GCNGC 2 cut(s) 148, 533
BlsI GCNGC 2 cut(s) 149, 534
Bme1390I CCNGG 1 cut(s) 333
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 333
BsaBI GATNNNNATC 1 cut(s) 516
BsaJI CCNNGG 1 cut(s) 198
BsaWI WCCGGW 1 cut(s) 586
Bse1I ACTGG 1 cut(s) 376
Bse3DI GCAATG 1 cut(s) 527
Bse8I GATNNNNATC 1 cut(s) 516
BseAI TCCGGA 1 cut(s) 586
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 3 cut(s) 11, 164, 583
BseJI GATNNNNATC 1 cut(s) 516
BseMI GCAATG 1 cut(s) 527
BseNI ACTGG 1 cut(s) 376
BseXI GCAGC 1 cut(s) 134
BsgI GTGCAG 1 cut(s) 56
BsiSI CCGG 1 cut(s) 587
BsmAI GTCTC 2 cut(s) 14, 584
Bsp13I TCCGGA 1 cut(s) 586
Bsp1407I TGTACA 1 cut(s) 317
Bsp143I GATC 5 cut(s) 67, 76, 100, 288, 511
BspACI CCGC 2 cut(s) 396, 533
BspEI TCCGGA 1 cut(s) 586
BspLI GGNNCC 1 cut(s) 204
BspMAI CTGCAG 1 cut(s) 448
BsrDI GCAATG 1 cut(s) 527
BsrGI TGTACA 1 cut(s) 317
BsrI ACTGG 1 cut(s) 376
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 5 cut(s) 67, 76, 100, 288, 511
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 2 cut(s) 199, 454
BstAUI TGTACA 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 1 cut(s) 128
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 3 cut(s) 11, 164, 583
BstKTI GATC 5 cut(s) 70, 79, 103, 291, 514
BstMAI GTCTC 2 cut(s) 14, 584
BstMBI GATC 5 cut(s) 67, 76, 100, 288, 511
BstMWI GCNNNNNNNGC 1 cut(s) 532
BstNI CCWGG 1 cut(s) 333
BstNSI RCATGY 1 cut(s) 572
BstSCI CCNGG 1 cut(s) 331
BstSFI CTRYAG 1 cut(s) 444
BstV1I GCAGC 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 3 cut(s) 11, 164, 583
Cac8I GCNNGC 1 cut(s) 354
Cfr13I GGNCC 1 cut(s) 25
CsiI ACCWGGT 1 cut(s) 331
Csp6I GTAC 3 cut(s) 91, 318, 365
CviAII CATG 3 cut(s) 53, 305, 569
CviJI RGCY 2 cut(s) 205, 526
CviKI_1 RGCY 2 cut(s) 205, 526
CviQI GTAC 3 cut(s) 91, 318, 365
DdeI CTNAG 1 cut(s) 128
DpnI GATC 5 cut(s) 69, 78, 102, 290, 513
DpnII GATC 5 cut(s) 67, 76, 100, 288, 511
Eco47I GGWCC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 331
EcoT22I ATGCAT 2 cut(s) 54, 570
FaeI CATG 3 cut(s) 56, 308, 572
FatI CATG 3 cut(s) 52, 304, 568
Fnu4HI GCNGC 2 cut(s) 148, 533
FokI GGATG 3 cut(s) 18, 171, 570
Fsp4HI GCNGC 2 cut(s) 148, 533
FspBI CTAG 1 cut(s) 549
GluI GCNGC 2 cut(s) 148, 533
HapII CCGG 1 cut(s) 587
Hin1II CATG 3 cut(s) 56, 308, 572
HinfI GANTC 2 cut(s) 110, 124
HpaII CCGG 1 cut(s) 587
HphI GGTGA 1 cut(s) 128
Hpy188I TCNGA 5 cut(s) 64, 229, 383, 424, 604
Hpy188III TCNNGA 3 cut(s) 343, 521, 587
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 2 cut(s) 199, 454
HpyCH4IV ACGT 1 cut(s) 498
HpyCH4V TGCA 5 cut(s) 52, 73, 164, 446, 568
HpyF10VI GCNNNNNNNGC 1 cut(s) 532
HpyF3I CTNAG 1 cut(s) 128
HpySE526I ACGT 1 cut(s) 498
Hsp92II CATG 3 cut(s) 56, 308, 572
Kpn2I TCCGGA 1 cut(s) 586
Kzo9I GATC 5 cut(s) 67, 76, 100, 288, 511
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 7 cut(s) 65, 99, 318, 328, 345, 389, 600
Lsp1109I GCAGC 1 cut(s) 134
MabI ACCWGGT 1 cut(s) 331
MaeI CTAG 1 cut(s) 549
MaeII ACGT 1 cut(s) 498
MalI GATC 5 cut(s) 69, 78, 102, 290, 513
MboI GATC 5 cut(s) 67, 76, 100, 288, 511
MboII GAAGA 3 cut(s) 352, 364, 473
MluCI AATT 6 cut(s) 165, 253, 293, 337, 502, 555
MnlI CCTC 1 cut(s) 418
Mph1103I ATGCAT 2 cut(s) 54, 570
MroI TCCGGA 1 cut(s) 586
MroXI GAANNNNTTC 1 cut(s) 123
MseI TTAA 3 cut(s) 168, 183, 501
MspI CCGG 1 cut(s) 587
MspR9I CCNGG 1 cut(s) 333
MvaI CCWGG 1 cut(s) 333
MwoI GCNNNNNNNGC 1 cut(s) 532
NdeII GATC 5 cut(s) 67, 76, 100, 288, 511
NlaIII CATG 3 cut(s) 56, 308, 572
NlaIV GGNNCC 1 cut(s) 204
NsiI ATGCAT 2 cut(s) 54, 570
NspI RCATGY 1 cut(s) 572
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 2 cut(s) 110, 124
PkrI GCNGC 2 cut(s) 149, 534
Psp1406I AACGTT 1 cut(s) 498
Psp6I CCWGG 1 cut(s) 331
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 1 cut(s) 25
PstI CTGCAG 1 cut(s) 448
RsaI GTAC 3 cut(s) 92, 319, 366
RsaNI GTAC 3 cut(s) 91, 318, 365
SaqAI TTAA 3 cut(s) 168, 183, 501
SatI GCNGC 2 cut(s) 148, 533
Sau3AI GATC 5 cut(s) 67, 76, 100, 288, 511
Sau96I GGNCC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 333
SetI ASST 4 cut(s) 30, 334, 370, 501
SexAI ACCWGGT 1 cut(s) 331
SfcI CTRYAG 1 cut(s) 444
SinI GGWCC 1 cut(s) 25
Sse9I AATT 6 cut(s) 165, 253, 293, 337, 502, 555
SsiI CCGC 2 cut(s) 396, 533
SspMI CTAG 1 cut(s) 549
StyD4I CCNGG 1 cut(s) 331
TaaI ACNGT 2 cut(s) 199, 454
TaiI ACGT 1 cut(s) 501
TaqI TCGA 1 cut(s) 20
TasI AATT 6 cut(s) 165, 253, 293, 337, 502, 555
TatI WGTACW 1 cut(s) 317
TauI GCSGC 1 cut(s) 535
TfiI GAWTC 2 cut(s) 110, 124
Tru1I TTAA 3 cut(s) 168, 183, 501
Tru9I TTAA 3 cut(s) 168, 183, 501
TseI GCWGC 1 cut(s) 147
TspDTI ATGAA 2 cut(s) 482, 492
VpaK11BI GGWCC 1 cut(s) 25
XapI RAATTY 1 cut(s) 293
XceI RCATGY 1 cut(s) 572
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 1 cut(s) 549
Zsp2I ATGCAT 2 cut(s) 54, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.