Rh2AG155400

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000947
Physical Location & Seq
Forward (+)
14392890 .. 14394153
1264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG155400.1

Sequence Viewer

Length: 732 bp
ATGCGGGGCAAGTTATACAGCATAGCCATGTCATGGAAGCTTTTAGGCATTGACCTCAAAACTATTGAAGCTTCGACCCTTGAACTTCCTCTTCATGATGCCGATAAGACCGGAGCAATGGGATGTCTCGGTGTGTCGATGGACCTTCTATGCTATATAAAGTGTATGCATGATACTTCTGATGATCTGCACGATCTGGTAGTTTGGTACTACGATGATCGTTGTGAATCTGGTGAATGGATTCTCAGATATAGTGTTTCTTGCTGCTTGTTGGGATGTGCAATTAAGTATCAAGGGTTTAAGTATGATGATACCGTGGAGCCTTATGCTATAAGTTCAAGTTCTGATGTCTTGTTCTTTGGCACTTCCAATTTGATTTGTTGCTACCATCTCAAAAGCGAAAAGATCAAATTCGTGTGTCATGCAGATTGCTGTACAATAGATACACCCGGTAATTTCTGGATATTGCGTGCTTTCTTCGTACCTTTCTTCCAGTTCCGAAAGAGAAATAGCGGCTCTACTGTCTTACCAATGGTTTCAGATGACATAGAGATTTTGACTGCGGAAACAGTATGCGAAGAAATGAAAGATGATGAATATGTTGAAGTGATAAACGTTAATTTATGTGATCGTCATGAAGAGCCATTGCCGCCGTTGATTTATCCTAGTGAAATTACTGAAATGCATGTGGAGTTTAGTCATCCGGAGACTTCAAGTTCCGATGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

243

Amino Acids

27.71

Weight (kDa)

4.56

Isoelectric Point (pI)

47.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 33
AccIII TCCGGA 1 cut(s) 703
AciI CCGC 4 cut(s) 4, 513, 563, 650
AclI AACGTT 1 cut(s) 615
AcsI RAATTY 1 cut(s) 410
AfaI GTAC 3 cut(s) 209, 436, 483
AfiI CCNNNNNNNGG 1 cut(s) 33
AgsI TTSAA 5 cut(s) 68, 83, 339, 605, 714
AluBI AGCT 2 cut(s) 40, 71
AluI AGCT 2 cut(s) 40, 71
Alw26I GTCTC 2 cut(s) 131, 701
Aor13HI TCCGGA 1 cut(s) 703
ApeKI GCWGC 1 cut(s) 264
ApoI RAATTY 1 cut(s) 410
Asp700I GAANNNNTTC 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 142
AsuC2I CCSGG 1 cut(s) 450
AsuHPI GGTGA 1 cut(s) 245
AvaII GGWCC 1 cut(s) 142
BbvI GCAGC 1 cut(s) 251
BccI CCATC 2 cut(s) 133, 396
BceAI ACGGC 1 cut(s) 637
BcnI CCSGG 1 cut(s) 450
BcoDI GTCTC 2 cut(s) 131, 701
BfaI CTAG 1 cut(s) 666
BisI GCNGC 3 cut(s) 265, 514, 650
BlsI GCNGC 3 cut(s) 266, 515, 651
Bme1390I CCNGG 1 cut(s) 450
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 1 cut(s) 450
BmsI GCATC 1 cut(s) 88
BpuMI CCSGG 1 cut(s) 450
BsaJI CCNNGG 1 cut(s) 315
BsaWI WCCGGW 2 cut(s) 110, 703
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 493
Bse3DI GCAATG 2 cut(s) 123, 644
BseAI TCCGGA 1 cut(s) 703
BseDI CCNNGG 1 cut(s) 315
BseGI GGATG 3 cut(s) 128, 281, 700
BseLI CCNNNNNNNGG 1 cut(s) 33
BseMI GCAATG 2 cut(s) 123, 644
BseMII CTCAG 1 cut(s) 259
BseNI ACTGG 1 cut(s) 493
BseXI GCAGC 1 cut(s) 251
BsgI GTGCAG 1 cut(s) 173
BsiSI CCGG 3 cut(s) 111, 450, 704
BslI CCNNNNNNNGG 1 cut(s) 33
BsmAI GTCTC 2 cut(s) 131, 701
Bsp13I TCCGGA 1 cut(s) 703
Bsp1407I TGTACA 1 cut(s) 434
Bsp143I GATC 5 cut(s) 184, 193, 217, 405, 628
BspACI CCGC 4 cut(s) 4, 513, 563, 650
BspCNI CTCAG 1 cut(s) 258
BspEI TCCGGA 1 cut(s) 703
BspHI TCATGA 2 cut(s) 94, 634
BspLI GGNNCC 1 cut(s) 321
BspQI GCTCTTC 1 cut(s) 633
BsrDI GCAATG 2 cut(s) 123, 644
BsrGI TGTACA 1 cut(s) 434
BsrI ACTGG 1 cut(s) 493
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 5 cut(s) 184, 193, 217, 405, 628
Bst4CI ACNGT 3 cut(s) 316, 523, 571
Bst6I CTCTTC 2 cut(s) 96, 633
BstAUI TGTACA 1 cut(s) 434
BstC8I GCNNGC 1 cut(s) 471
BstDEI CTNAG 1 cut(s) 245
BstDSI CCRYGG 1 cut(s) 315
BstF5I GGATG 3 cut(s) 128, 281, 700
BstKTI GATC 5 cut(s) 187, 196, 220, 408, 631
BstMAI GTCTC 2 cut(s) 131, 701
BstMBI GATC 5 cut(s) 184, 193, 217, 405, 628
BstMWI GCNNNNNNNGC 1 cut(s) 649
BstNSI RCATGY 1 cut(s) 689
BstSCI CCNGG 1 cut(s) 448
BstV1I GCAGC 1 cut(s) 251
BtgI CCRYGG 1 cut(s) 315
BtsCI GGATG 3 cut(s) 128, 281, 700
Cac8I GCNNGC 1 cut(s) 471
CciI TCATGA 2 cut(s) 94, 634
Cfr13I GGNCC 1 cut(s) 142
Csp6I GTAC 3 cut(s) 208, 435, 482
CviAII CATG 7 cut(s) 28, 33, 95, 170, 422, 635, 686
CviJI RGCY 6 cut(s) 26, 40, 71, 322, 516, 643
CviKI_1 RGCY 6 cut(s) 26, 40, 71, 322, 516, 643
CviQI GTAC 3 cut(s) 208, 435, 482
DdeI CTNAG 1 cut(s) 245
DpnI GATC 5 cut(s) 186, 195, 219, 407, 630
DpnII GATC 5 cut(s) 184, 193, 217, 405, 628
Eam1104I CTCTTC 2 cut(s) 96, 633
EarI CTCTTC 2 cut(s) 96, 633
Eco47I GGWCC 1 cut(s) 142
EcoT22I ATGCAT 2 cut(s) 171, 687
FaeI CATG 7 cut(s) 31, 36, 98, 173, 425, 638, 689
FatI CATG 7 cut(s) 27, 32, 94, 169, 421, 634, 685
Fnu4HI GCNGC 3 cut(s) 265, 514, 650
FokI GGATG 3 cut(s) 135, 288, 687
Fsp4HI GCNGC 3 cut(s) 265, 514, 650
FspBI CTAG 1 cut(s) 666
GluI GCNGC 3 cut(s) 265, 514, 650
HapII CCGG 3 cut(s) 111, 450, 704
Hin1II CATG 7 cut(s) 31, 36, 98, 173, 425, 638, 689
HindIII AAGCTT 2 cut(s) 38, 69
HinfI GANTC 2 cut(s) 227, 241
HpaII CCGG 3 cut(s) 111, 450, 704
HphI GGTGA 1 cut(s) 245
Hpy188I TCNGA 6 cut(s) 181, 248, 346, 500, 541, 721
Hpy188III TCNNGA 4 cut(s) 95, 460, 635, 704
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 3 cut(s) 316, 523, 571
HpyCH4IV ACGT 1 cut(s) 615
HpyCH4V TGCA 5 cut(s) 169, 190, 281, 425, 685
HpyF10VI GCNNNNNNNGC 1 cut(s) 649
HpyF3I CTNAG 1 cut(s) 245
HpySE526I ACGT 1 cut(s) 615
Hsp92II CATG 7 cut(s) 31, 36, 98, 173, 425, 638, 689
Kpn2I TCCGGA 1 cut(s) 703
Kzo9I GATC 5 cut(s) 184, 193, 217, 405, 628
LguI GCTCTTC 1 cut(s) 633
LmnI GCTCC 2 cut(s) 113, 319
LpnPI CCDG 7 cut(s) 124, 182, 216, 445, 463, 506, 717
Lsp1109I GCAGC 1 cut(s) 251
LweI GCATC 1 cut(s) 88
MaeI CTAG 1 cut(s) 666
MaeII ACGT 1 cut(s) 615
MalI GATC 5 cut(s) 186, 195, 219, 407, 630
MboI GATC 5 cut(s) 184, 193, 217, 405, 628
MboII GAAGA 5 cut(s) 83, 469, 481, 590, 650
MluCI AATT 6 cut(s) 282, 370, 410, 454, 619, 672
MnlI CCTC 2 cut(s) 65, 99
Mph1103I ATGCAT 2 cut(s) 171, 687
MroI TCCGGA 1 cut(s) 703
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 3 cut(s) 285, 300, 618
MslI CAYNNNNRTG 1 cut(s) 26
MspI CCGG 3 cut(s) 111, 450, 704
MspR9I CCNGG 1 cut(s) 450
MwoI GCNNNNNNNGC 1 cut(s) 649
NciI CCSGG 1 cut(s) 450
NdeII GATC 5 cut(s) 184, 193, 217, 405, 628
NlaIII CATG 7 cut(s) 31, 36, 98, 173, 425, 638, 689
NlaIV GGNNCC 1 cut(s) 321
NsiI ATGCAT 2 cut(s) 171, 687
NspI RCATGY 1 cut(s) 689
PagI TCATGA 2 cut(s) 94, 634
PciSI GCTCTTC 1 cut(s) 633
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 2 cut(s) 227, 241
PflMI CCANNNNNTGG 1 cut(s) 33
PkrI GCNGC 3 cut(s) 266, 515, 651
Psp1406I AACGTT 1 cut(s) 615
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 1 cut(s) 142
RsaI GTAC 3 cut(s) 209, 436, 483
RsaNI GTAC 3 cut(s) 208, 435, 482
RseI CAYNNNNRTG 1 cut(s) 26
SapI GCTCTTC 1 cut(s) 633
SaqAI TTAA 3 cut(s) 285, 300, 618
SatI GCNGC 3 cut(s) 265, 514, 650
Sau3AI GATC 5 cut(s) 184, 193, 217, 405, 628
Sau96I GGNCC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 450
SetI ASST 6 cut(s) 42, 57, 73, 147, 487, 618
SfaNI GCATC 1 cut(s) 88
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 26
Sse9I AATT 6 cut(s) 282, 370, 410, 454, 619, 672
SsiI CCGC 4 cut(s) 4, 513, 563, 650
SspMI CTAG 1 cut(s) 666
StyD4I CCNGG 1 cut(s) 448
TaaI ACNGT 3 cut(s) 316, 523, 571
TaiI ACGT 1 cut(s) 618
TaqI TCGA 2 cut(s) 74, 137
TasI AATT 6 cut(s) 282, 370, 410, 454, 619, 672
TatI WGTACW 1 cut(s) 434
TauI GCSGC 2 cut(s) 516, 652
TfiI GAWTC 2 cut(s) 227, 241
Tru1I TTAA 3 cut(s) 285, 300, 618
Tru9I TTAA 3 cut(s) 285, 300, 618
TseI GCWGC 1 cut(s) 264
TspDTI ATGAA 4 cut(s) 83, 599, 609, 651
Van91I CCANNNNNTGG 1 cut(s) 33
VpaK11BI GGWCC 1 cut(s) 142
XapI RAATTY 1 cut(s) 410
XceI RCATGY 1 cut(s) 689
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 1 cut(s) 666
Zsp2I ATGCAT 2 cut(s) 171, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.