Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000947

Physical Location & Seq

Genomic Coordinates Reverse (-)

23183065 .. 23186670

Gene Structure 3606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1268400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAGCCATTATGGCCTGAAAACACTATCTTATCCGTATACAGACAGCACTCTGTGGCCGGCTAATGATGATACGTGTGTTCAACTCAATTACGTACACTTGCACCATAATTATAACTACTGGACCAAATTCTGGAATGATGGTATTCTAAAACCCAGTATAGTTCTAGGTCAGCCGCGCAACATATCTGACTATTATCTTGACTGTTGTAATGGGATAATTCTGTTCTTCAACGTACGCACTAGTCAATTTTGTGTGTTCAACCCCATCACCAAACAACATATCTCCATACCTATAGCATGCGCACATGAGCGTGAGCATTTTTACGCTGCCTTGGCTTTTGACCCTATTGAATCCAACCACCACAGAATTGTTCGAATTGATTATTCCCCACAATCCAAATCCAGTGGTTCCAGAGTCCCAACGCCAACCCTAACCGTGATGACGGACATATTTTGCATTCTGGACAGTGTGTTTGTCGTGGGTTACAACTCGACCCCATGTTCATTGATGGGTTTAAAAGTTCCAAGGTTTGCAGGCATTTTGTATACTTGTGGGGGGGTGTTGTATGGCCTTGCTAGTTCACAGAAAGTTTTGTGTATTGACCTCAATACCATTAAAGCTCGAGCCTTTGAACGCCCTCGTGTTCTTGGGGACGATGATAAGACGGGTGCAACAATGGGATGTCTTGGGGTGTCAAATGATCTTGTTTGTTATGTAACCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

243

Amino Acids

27.19

Weight (kDa)

7.07

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	63 - 135	1.3e-06	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14071 FvH4_1g14191
malus_domestica	MD12G1051600.v1.1 MD12G1211200.v1.1 MD15G1028800.v1.1 MD15G1268400.v1.1
prunus_persica	Prupe.7G151200_v2.0.a1 Prupe.7G151200_v2.0.a1
pyrus_communis	pycom02g12120 pycom12g06960 pycom15g23320
rosa_chinensis	RchiOBHm_Chr2g0102561 RchiOBHm_Chr2g0102901
rosa_laevigata	RLG00000017149 RLG00000017152 RLG00000017154 RLG00000017156 RLG00000017167 RLG00000017168 RLG00000017170 RLG00000017172 RLG00000017173 RLG00000017175 RLG00000028983 RLG00000028984
rosa_multiflora	Rmu_sc0000388.1_g000052 Rmu_sc0000474.1_g000001 Rmu_sc0002077.1_g000009 Rmu_sc0002077.1_g000013 Rmu_sc0003804.1_g000016 Rmu_sc0003804.1_g000017 Rmu_sc0003804.1_g000032 Rmu_sc0005579.1_g000011 Rmu_sc0005881.1_g000007 Rmu_sc0005881.1_g000008 Rmu_sc0006537.1_g000002 Rmu_sc0008034.1_g000006 Rmu_sc0013762.1_g000002
rosa_roxburghii	Rroxscaffold_2G00140470 Rroxscaffold_2G00140500 Rroxscaffold_4G00310850 Rroxscaffold_4G00310900
rosa_rugosa	Rorug02G0107800 Rorug02G0107800 Rorug02G0108900 Rorug02G0109000 Rorug02G0109100
rosa_samantha	Rh1BG085900 Rh2AG155400 Rh2AG156100 Rh2AG156500 Rh2AG156700 Rh2BG162400 Rh2CG161400 Rh2CG161800 Rh2CG163300 Rh2CG163500 Rh2CG165100 Rh2DG161000 Rh2DG161600 Rh2DG162000 Rh5BG333000
rosa_wichuraiana	Rw2G012160 Rw2G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	114
Acc16I	TGCGCA	1 cut(s)	304
AccB7I	CCANNNNNTGG	1 cut(s)	132
AccI	GTMKAC	2 cut(s)	38, 548
AccII	CGCG	1 cut(s)	178
AciI	CCGC	1 cut(s)	176
AcoI	YGGCCR	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	128
AdeI	CACNNNGTG	1 cut(s)	54
AfaI	GTAC	2 cut(s)	96, 237
AfiI	CCNNNNNNNGG	1 cut(s)	132
AflIII	ACRYGT	1 cut(s)	74
AgsI	TTSAA	5 cut(s)	83, 232, 262, 353, 635
AhlI	ACTAGT	1 cut(s)	242
AluBI	AGCT	1 cut(s)	623
AluI	AGCT	1 cut(s)	623
Ama87I	CYCGRG	1 cut(s)	624
AoxI	GGCC	3 cut(s)	13, 56, 571
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	1 cut(s)	128
ArsI	GACNNNNNNTTYG	2 cut(s)	458, 490
AspLEI	GCGC	2 cut(s)	180, 305
AspS9I	GGNCC	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	262
AsuII	TTCGAA	1 cut(s)	376
AvaI	CYCGRG	1 cut(s)	624
AvaII	GGWCC	1 cut(s)	123
BaeI	ACNNNNGTAYC	2 cut(s)	63, 96
BauI	CACGAG	1 cut(s)	642
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	3 cut(s)	134, 275, 505
BcuI	ACTAGT	1 cut(s)	242
BfaI	CTAG	3 cut(s)	167, 243, 579
BfmI	CTRYAG	1 cut(s)	294
BglI	GCCNNNNNGGC	1 cut(s)	12
BisI	GCNGC	2 cut(s)	176, 330
BlsI	GCNGC	2 cut(s)	177, 331
Bme18I	GGWCC	1 cut(s)	123
BmeT110I	CYCGRG	1 cut(s)	624
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	412
BmrI	ACTGGG	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	150
Bpu14I	TTCGAA	1 cut(s)	376
BsaAI	YACGTR	2 cut(s)	75, 94
BsaJI	CCNNGG	2 cut(s)	333, 527
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	3 cut(s)	125, 156, 405
BseDI	CCNNGG	2 cut(s)	333, 527
BseGI	GGATG	1 cut(s)	689
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseNI	ACTGG	3 cut(s)	125, 156, 405
BseXI	GCAGC	1 cut(s)	316
Bsh1236I	CGCG	1 cut(s)	178
BshFI	GGCC	3 cut(s)	15, 58, 573
BsiHKCI	CYCGRG	1 cut(s)	624
BsiSI	CCGG	1 cut(s)	59
BsiWI	CGTACG	1 cut(s)	235
BslFI	GGGAC	2 cut(s)	404, 668
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmFI	GGGAC	2 cut(s)	404, 668
BsmI	GAATGC	1 cut(s)	459
BsnI	GGCC	3 cut(s)	15, 58, 573
BsoBI	CYCGRG	1 cut(s)	624
Bsp119I	TTCGAA	1 cut(s)	376
Bsp143I	GATC	1 cut(s)	703
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	3 cut(s)	15, 58, 573
BspFNI	CGCG	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	412
BspT104I	TTCGAA	1 cut(s)	376
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	3 cut(s)	125, 156, 405
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	2 cut(s)	333, 527
BssMI	GATC	1 cut(s)	703
BssNAI	GTATAC	2 cut(s)	39, 549
BssSI	CACGAG	1 cut(s)	642
BssT1I	CCWWGG	2 cut(s)	333, 527
Bst1107I	GTATAC	2 cut(s)	39, 549
Bst2BI	CACGAG	1 cut(s)	642
Bst4CI	ACNGT	3 cut(s)	206, 439, 470
BstBAI	YACGTR	2 cut(s)	75, 94
BstBI	TTCGAA	1 cut(s)	376
BstC8I	GCNNGC	3 cut(s)	60, 301, 538
BstF5I	GGATG	1 cut(s)	689
BstFNI	CGCG	1 cut(s)	178
BstHHI	GCGC	2 cut(s)	180, 305
BstKTI	GATC	1 cut(s)	706
BstMBI	GATC	1 cut(s)	703
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 335
BstNSI	RCATGY	1 cut(s)	303
BstSFI	CTRYAG	1 cut(s)	294
BstSNI	TACGTA	1 cut(s)	94
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	1 cut(s)	316
BstZ17I	GTATAC	2 cut(s)	39, 549
BsuRI	GGCC	3 cut(s)	15, 58, 573
BtsCI	GGATG	1 cut(s)	689
BtsIMutI	CAGTG	2 cut(s)	412, 475
Cac8I	GCNNGC	3 cut(s)	60, 301, 538
CfoI	GCGC	2 cut(s)	180, 305
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	123
Csp6I	GTAC	2 cut(s)	95, 236
CspCI	CAANNNNNGTGG	2 cut(s)	388, 423
CviAII	CATG	4 cut(s)	300, 308, 501, 724
CviJI	RGCY	9 cut(s)	6, 15, 58, 62, 175, 338, 573, 623, 629
CviKI_1	RGCY	9 cut(s)	6, 15, 58, 62, 175, 338, 573, 623, 629
CviQI	GTAC	2 cut(s)	95, 236
DpnI	GATC	1 cut(s)	705
DpnII	GATC	1 cut(s)	703
DraI	TTTAAA	1 cut(s)	519
DraIII	CACNNNGTG	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	56
Eco105I	TACGTA	1 cut(s)	94
Eco130I	CCWWGG	2 cut(s)	333, 527
Eco47I	GGWCC	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	624
EcoT14I	CCWWGG	2 cut(s)	333, 527
ErhI	CCWWGG	2 cut(s)	333, 527
FaeI	CATG	4 cut(s)	303, 311, 504, 727
FaqI	GGGAC	2 cut(s)	404, 668
FatI	CATG	4 cut(s)	299, 307, 500, 723
FblI	GTMKAC	2 cut(s)	38, 548
Fnu4HI	GCNGC	2 cut(s)	176, 330
FokI	GGATG	1 cut(s)	696
Fsp4HI	GCNGC	2 cut(s)	176, 330
FspAI	RTGCGCAY	1 cut(s)	304
FspBI	CTAG	3 cut(s)	167, 243, 579
FspI	TGCGCA	1 cut(s)	304
GlaI	GCGC	2 cut(s)	179, 304
GluI	GCNGC	2 cut(s)	176, 330
HaeIII	GGCC	3 cut(s)	15, 58, 573
HapII	CCGG	1 cut(s)	59
HhaI	GCGC	2 cut(s)	180, 305
Hin1II	CATG	4 cut(s)	303, 311, 504, 727
Hin6I	GCGC	2 cut(s)	178, 303
HinP1I	GCGC	2 cut(s)	178, 303
HinfI	GANTC	2 cut(s)	353, 417
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	4 cut(s)	39, 97, 549, 584
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	4 cut(s)	133, 200, 414, 464
Hpy8I	GTNNAC	4 cut(s)	39, 97, 549, 584
HpyCH4III	ACNGT	3 cut(s)	206, 439, 470
HpyCH4IV	ACGT	3 cut(s)	74, 93, 234
HpyCH4V	TGCA	4 cut(s)	103, 459, 536, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 335
HpySE526I	ACGT	3 cut(s)	74, 93, 234
Hsp92II	CATG	4 cut(s)	303, 311, 504, 727
HspAI	GCGC	2 cut(s)	178, 303
KroI	GCCGGC	1 cut(s)	58
KroNI	GCCGGC	1 cut(s)	60
Kzo9I	GATC	1 cut(s)	703
LpnPI	CCDG	9 cut(s)	29, 72, 106, 118, 169, 418, 427, 449, 522
Lsp1109I	GCAGC	1 cut(s)	316
MaeI	CTAG	3 cut(s)	167, 243, 579
MaeII	ACGT	3 cut(s)	74, 93, 234
MaeIII	GTNAC	2 cut(s)	485, 718
MalI	GATC	1 cut(s)	705
MboI	GATC	1 cut(s)	703
MboII	GAAGA	1 cut(s)	220
MluCI	AATT	7 cut(s)	88, 109, 128, 219, 248, 369, 378
MlyI	GAGTC	1 cut(s)	426
MmeI	TCCRAC	1 cut(s)	381
MnlI	CCTC	2 cut(s)	617, 651
MroNI	GCCGGC	1 cut(s)	58
MseI	TTAA	2 cut(s)	518, 618
MslI	CAYNNNNRTG	1 cut(s)	312
MspI	CCGG	1 cut(s)	59
Mva1269I	GAATGC	1 cut(s)	459
MvnI	CGCG	1 cut(s)	178
MwoI	GCNNNNNNNGC	2 cut(s)	12, 335
NaeI	GCCGGC	1 cut(s)	60
NdeII	GATC	1 cut(s)	703
NgoMIV	GCCGGC	1 cut(s)	58
NlaIII	CATG	4 cut(s)	303, 311, 504, 727
NlaIV	GGNNCC	1 cut(s)	412
NsbI	TGCGCA	1 cut(s)	304
NspI	RCATGY	1 cut(s)	303
NspV	TTCGAA	1 cut(s)	376
PaeI	GCATGC	1 cut(s)	303
PaeR7I	CTCGAG	1 cut(s)	624
PctI	GAATGC	1 cut(s)	459
PdiI	GCCGGC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	353
Pfl23II	CGTACG	1 cut(s)	235
PflMI	CCANNNNNTGG	1 cut(s)	132
PkrI	GCNGC	2 cut(s)	177, 331
PleI	GAGTC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	425
Ppu21I	YACGTR	2 cut(s)	75, 94
PsiI	TTATAA	1 cut(s)	114
PspLI	CGTACG	1 cut(s)	235
PspN4I	GGNNCC	1 cut(s)	412
PspPI	GGNCC	1 cut(s)	123
PspXI	VCTCGAGB	1 cut(s)	624
RsaI	GTAC	2 cut(s)	96, 237
RsaNI	GTAC	2 cut(s)	95, 236
RseI	CAYNNNNRTG	1 cut(s)	312
SaqAI	TTAA	2 cut(s)	518, 618
SatI	GCNGC	2 cut(s)	176, 330
Sau3AI	GATC	1 cut(s)	703
Sau96I	GGNCC	1 cut(s)	123
SchI	GAGTC	1 cut(s)	426
SetI	ASST	8 cut(s)	77, 96, 172, 237, 295, 533, 609, 625
SfcI	CTRYAG	1 cut(s)	294
Sfr274I	CTCGAG	1 cut(s)	624
SfuI	TTCGAA	1 cut(s)	376
SinI	GGWCC	1 cut(s)	123
SlaI	CTCGAG	1 cut(s)	624
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	624
SmoI	CTYRAG	1 cut(s)	624
SnaBI	TACGTA	1 cut(s)	94
SpeI	ACTAGT	1 cut(s)	242
SphI	GCATGC	1 cut(s)	303
Sse9I	AATT	7 cut(s)	88, 109, 128, 219, 248, 369, 378
SsiI	CCGC	1 cut(s)	176
SspMI	CTAG	3 cut(s)	167, 243, 579
StyI	CCWWGG	2 cut(s)	333, 527
TaaI	ACNGT	3 cut(s)	206, 439, 470
TaiI	ACGT	3 cut(s)	77, 96, 237
TaqI	TCGA	3 cut(s)	376, 494, 625
TasI	AATT	7 cut(s)	88, 109, 128, 219, 248, 369, 378
TauI	GCSGC	1 cut(s)	178
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	2 cut(s)	518, 618
Tru9I	TTAA	2 cut(s)	518, 618
TscAI	CASTG	2 cut(s)	412, 475
TseI	GCWGC	1 cut(s)	329
TspDTI	ATGAA	1 cut(s)	495
TspGWI	ACGGA	2 cut(s)	24, 461
TspRI	CASTG	2 cut(s)	412, 475
Van91I	CCANNNNNTGG	1 cut(s)	132
VpaK11BI	GGWCC	1 cut(s)	123
XapI	RAATTY	1 cut(s)	128
XceI	RCATGY	1 cut(s)	303
XhoI	CTCGAG	1 cut(s)	624
XmiI	GTMKAC	2 cut(s)	38, 548
XspI	CTAG	3 cut(s)	167, 243, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.