Rh2AG156700

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000947
Physical Location & Seq
Forward (+)
14650702 .. 14651220
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG156700.1

Sequence Viewer

Length: 519 bp
ATGGGGAATTTATGCGAGGATTTGTGGGTTGAGATCTTGGGTAGACTGTCATCTGAGAAAGACTTGGTGCCATGCATGAGTGTGTCCAAGTTATGGCACAGAATAGCATCAGATCTTTGGGTGAGGAGATTTTTGGCGCAGTCGCCTCCTTTGGGTGTTTACTTTCTCACCATCCAGAATCCTTCGAGTCCTTGCATGCTCACCATGGTGGACAAGGTGCCGTCTTATTTGCCTAGCATTAATTATATCTCTCTATATAATTATCATAACATGGATGATAATCTCGAAAGCACCAGTGGTTATCATCTCGGTACGTTATTTAATGGCTTAAGTGACCTGTTTGAGGGCTATAAGCGACGGTGGCAATTTTATCGACATTATAAACACGGTCACGATGATCATGATGATCAGTATCTACACGGCTGCAATGGATTGCTTCTGTTATTGAAATCGGGAACTTATCAGTTTTATGTGTGGCGTGTGCAATCCCATTATCACACAACAAGTCCCCGTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

172

Amino Acids

20.17

Weight (kDa)

6.78

Isoelectric Point (pI)

61.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 6 - 45 4.7e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 381
AccB1I GGYRCC 2 cut(s) 67, 217
AccB7I CCANNNNNTGG 1 cut(s) 93
AccI GTMKAC 1 cut(s) 43
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 2 cut(s) 313, 514
AfiI CCNNNNNNNGG 3 cut(s) 93, 152, 343
AflII CTTAAG 1 cut(s) 328
AgsI TTSAA 1 cut(s) 448
AleI CACNNNNGTG 1 cut(s) 206
ApeKI GCWGC 1 cut(s) 423
ApoI RAATTY 1 cut(s) 7
AseI ATTAAT 1 cut(s) 240
AspLEI GCGC 1 cut(s) 139
AsuHPI GGTGA 3 cut(s) 133, 160, 193
BanI GGYRCC 2 cut(s) 67, 217
BbvI GCAGC 1 cut(s) 410
BccI CCATC 1 cut(s) 179
BceAI ACGGC 2 cut(s) 205, 436
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BclI TGATCA 2 cut(s) 397, 406
BfaI CTAG 1 cut(s) 234
BfrI CTTAAG 1 cut(s) 328
BglII AGATCT 2 cut(s) 33, 112
BisI GCNGC 1 cut(s) 424
BlsI GCNGC 1 cut(s) 425
BmiI GGNNCC 2 cut(s) 69, 219
BmsI GCATC 1 cut(s) 116
BsaBI GATNNNNATC 2 cut(s) 279, 411
BsaJI CCNNGG 1 cut(s) 204
Bsc4I CCNNNNNNNGG 3 cut(s) 93, 152, 343
Bse1I ACTGG 1 cut(s) 294
Bse3DI GCAATG 1 cut(s) 433
Bse8I GATNNNNATC 2 cut(s) 279, 411
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 2 cut(s) 171, 280
BseJI GATNNNNATC 2 cut(s) 279, 411
BseLI CCNNNNNNNGG 3 cut(s) 93, 152, 343
BseMI GCAATG 1 cut(s) 433
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 139
BseXI GCAGC 1 cut(s) 410
BshNI GGYRCC 2 cut(s) 67, 217
BslFI GGGAC 1 cut(s) 492
BslI CCNNNNNNNGG 3 cut(s) 93, 152, 343
BsmFI GGGAC 1 cut(s) 492
Bsp143I GATC 4 cut(s) 33, 112, 397, 406
Bsp19I CCATGG 1 cut(s) 204
BspCNI CTCAG 1 cut(s) 46
BspHI TCATGA 1 cut(s) 400
BspLI GGNNCC 2 cut(s) 69, 219
BspT107I GGYRCC 2 cut(s) 67, 217
BspTI CTTAAG 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 433
BsrI ACTGG 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 4 cut(s) 33, 112, 397, 406
BssT1I CCWWGG 1 cut(s) 204
Bst4CI ACNGT 3 cut(s) 48, 360, 389
BstAFI CTTAAG 1 cut(s) 328
BstC8I GCNNGC 1 cut(s) 197
BstDEI CTNAG 1 cut(s) 54
BstDSI CCRYGG 1 cut(s) 204
BstENI CCTNNNNNAGG 1 cut(s) 341
BstF5I GGATG 2 cut(s) 171, 280
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 4 cut(s) 36, 115, 400, 409
BstMBI GATC 4 cut(s) 33, 112, 397, 406
BstMWI GCNNNNNNNGC 1 cut(s) 361
BstNSI RCATGY 1 cut(s) 199
BstV1I GCAGC 1 cut(s) 410
BstX2I RGATCY 2 cut(s) 33, 112
BstYI RGATCY 2 cut(s) 33, 112
BtgI CCRYGG 1 cut(s) 204
BtsCI GGATG 2 cut(s) 171, 280
BtsIMutI CAGTG 1 cut(s) 301
Cac8I GCNNGC 1 cut(s) 197
CciI TCATGA 1 cut(s) 400
CfoI GCGC 1 cut(s) 139
Csp6I GTAC 2 cut(s) 312, 513
CviAII CATG 6 cut(s) 72, 76, 196, 205, 271, 401
CviJI RGCY 3 cut(s) 327, 348, 423
CviKI_1 RGCY 3 cut(s) 327, 348, 423
CviQI GTAC 2 cut(s) 312, 513
DdeI CTNAG 1 cut(s) 54
DpnI GATC 4 cut(s) 35, 114, 399, 408
DpnII GATC 4 cut(s) 33, 112, 397, 406
Eco130I CCWWGG 1 cut(s) 204
EcoNI CCTNNNNNAGG 1 cut(s) 341
EcoT14I CCWWGG 1 cut(s) 204
EcoT22I ATGCAT 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 6 cut(s) 75, 79, 199, 208, 274, 404
FaqI GGGAC 1 cut(s) 492
FatI CATG 6 cut(s) 71, 75, 195, 204, 270, 400
FbaI TGATCA 2 cut(s) 397, 406
FblI GTMKAC 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 424
FokI GGATG 2 cut(s) 158, 287
Fsp4HI GCNGC 1 cut(s) 424
FspBI CTAG 1 cut(s) 234
GlaI GCGC 1 cut(s) 138
GluI GCNGC 1 cut(s) 424
HhaI GCGC 1 cut(s) 139
Hin1II CATG 6 cut(s) 75, 79, 199, 208, 274, 404
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HinfI GANTC 2 cut(s) 178, 187
HphI GGTGA 3 cut(s) 133, 160, 193
Hpy166II GTNNAC 3 cut(s) 44, 160, 211
Hpy188I TCNGA 2 cut(s) 55, 112
Hpy188III TCNNGA 5 cut(s) 175, 284, 392, 401, 453
Hpy8I GTNNAC 3 cut(s) 44, 160, 211
Hpy99I CGWCG 1 cut(s) 360
HpyAV CCTTC 1 cut(s) 192
HpyCH4III ACNGT 3 cut(s) 48, 360, 389
HpyCH4IV ACGT 1 cut(s) 314
HpyCH4V TGCA 4 cut(s) 75, 195, 426, 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 361
HpyF3I CTNAG 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 314
Hsp92II CATG 6 cut(s) 75, 79, 199, 208, 274, 404
HspAI GCGC 1 cut(s) 137
Ksp22I TGATCA 2 cut(s) 397, 406
Kzo9I GATC 4 cut(s) 33, 112, 397, 406
LpnPI CCDG 3 cut(s) 188, 307, 350
Lsp1109I GCAGC 1 cut(s) 410
LweI GCATC 1 cut(s) 116
MaeI CTAG 1 cut(s) 234
MaeII ACGT 1 cut(s) 314
MaeIII GTNAC 2 cut(s) 332, 389
MalI GATC 4 cut(s) 35, 114, 399, 408
MboI GATC 4 cut(s) 33, 112, 397, 406
MflI RGATCY 2 cut(s) 33, 112
MluCI AATT 4 cut(s) 7, 241, 259, 365
MlyI GAGTC 1 cut(s) 196
MnlI CCTC 4 cut(s) 10, 117, 156, 337
Mph1103I ATGCAT 1 cut(s) 77
MseI TTAA 3 cut(s) 240, 321, 329
MslI CAYNNNNRTG 2 cut(s) 80, 206
MspCI CTTAAG 1 cut(s) 328
MwoI GCNNNNNNNGC 1 cut(s) 361
NcoI CCATGG 1 cut(s) 204
NdeII GATC 4 cut(s) 33, 112, 397, 406
NlaIII CATG 6 cut(s) 75, 79, 199, 208, 274, 404
NlaIV GGNNCC 2 cut(s) 69, 219
NmuCI GTSAC 2 cut(s) 332, 389
NsiI ATGCAT 1 cut(s) 77
NspI RCATGY 1 cut(s) 199
OliI CACNNNNGTG 1 cut(s) 206
PaeI GCATGC 1 cut(s) 199
PagI TCATGA 1 cut(s) 400
PfeI GAWTC 1 cut(s) 178
PflMI CCANNNNNTGG 1 cut(s) 93
PkrI GCNGC 1 cut(s) 425
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
PshBI ATTAAT 1 cut(s) 240
PsiI TTATAA 1 cut(s) 381
PspN4I GGNNCC 2 cut(s) 69, 219
PsuI RGATCY 2 cut(s) 33, 112
RsaI GTAC 2 cut(s) 313, 514
RsaNI GTAC 2 cut(s) 312, 513
RseI CAYNNNNRTG 2 cut(s) 80, 206
SaqAI TTAA 3 cut(s) 240, 321, 329
SatI GCNGC 1 cut(s) 424
Sau3AI GATC 4 cut(s) 33, 112, 397, 406
SchI GAGTC 1 cut(s) 196
SetI ASST 4 cut(s) 219, 317, 339, 518
SfaNI GCATC 1 cut(s) 116
SmiMI CAYNNNNRTG 2 cut(s) 80, 206
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
SphI GCATGC 1 cut(s) 199
Sse9I AATT 4 cut(s) 7, 241, 259, 365
SspMI CTAG 1 cut(s) 234
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 3 cut(s) 48, 360, 389
TaiI ACGT 1 cut(s) 317
TaqI TCGA 3 cut(s) 185, 285, 373
TasI AATT 4 cut(s) 7, 241, 259, 365
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 3 cut(s) 240, 321, 329
Tru9I TTAA 3 cut(s) 240, 321, 329
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 2 cut(s) 332, 389
TseI GCWGC 1 cut(s) 423
Tsp45I GTSAC 2 cut(s) 332, 389
TspRI CASTG 1 cut(s) 301
Van91I CCANNNNNTGG 1 cut(s) 93
Vha464I CTTAAG 1 cut(s) 328
VspI ATTAAT 1 cut(s) 240
XagI CCTNNNNNAGG 1 cut(s) 341
XapI RAATTY 1 cut(s) 7
XceI RCATGY 1 cut(s) 199
XmiI GTMKAC 1 cut(s) 43
XspI CTAG 1 cut(s) 234
Zsp2I ATGCAT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.