Rmu_sc0002077.1_g000009

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002077.1
OG0000947
Physical Location & Seq
Reverse (-)
29703 .. 30174
472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002077.1_g000009.1.cds

Sequence Viewer

Length: 372 bp
atgaagaagtttaacaggctgcaaattgacccagattttactgagggattcaaaagctccaagttgtacaggcattttgtttacttacggggcacgctatacagcatagcccaatcctggaaccttttatgcattgacctcaatactgttgcagcttctgcccttaaacttcctgttccagagaatgaaaataccggagccatgggatgtcttggggtgtcgatgaatagtctctgctatatgaagcgaatgctcgataattcgaaggactttcacaatctggcactttggtataatgatgatgaatctggggaatggattctcagatattgtgtttcttgtcgcatattgggatacggattccagtcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

123

Amino Acids

14.15

Weight (kDa)

7.61

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 68
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 1 cut(s) 52
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 2 cut(s) 57, 155
AluI AGCT 2 cut(s) 57, 155
Alw26I GTCTC 1 cut(s) 236
AlwNI CAGNNNCTG 1 cut(s) 158
ApeKI GCWGC 2 cut(s) 19, 152
Asp700I GAANNNNTTC 1 cut(s) 318
AsuII TTCGAA 1 cut(s) 263
BaeGI GKGCMC 1 cut(s) 95
BbvI GCAGC 2 cut(s) 6, 164
BciT130I CCWGG 1 cut(s) 118
BciVI GTATCC 1 cut(s) 347
BcoDI GTCTC 1 cut(s) 236
BfuI GTATCC 1 cut(s) 347
BisI GCNGC 2 cut(s) 20, 153
BlsI GCNGC 2 cut(s) 21, 154
Bme1390I CCNGG 1 cut(s) 118
BmiI GGNNCC 2 cut(s) 122, 199
BmrFI CCNGG 1 cut(s) 118
Bpu14I TTCGAA 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 201
BsaWI WCCGGW 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 364
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 1 cut(s) 212
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMII CTCAG 2 cut(s) 33, 337
BseNI ACTGG 1 cut(s) 364
BseSI GKGCMC 1 cut(s) 95
BseXI GCAGC 2 cut(s) 6, 164
BsiSI CCGG 1 cut(s) 195
BslI CCNNNNNNNGG 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 236
BsmI GAATGC 1 cut(s) 255
Bsp119I TTCGAA 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 95
Bsp1407I TGTACA 1 cut(s) 66
Bsp19I CCATGG 1 cut(s) 201
BspCNI CTCAG 2 cut(s) 34, 336
BspLI GGNNCC 2 cut(s) 122, 199
BspT104I TTCGAA 1 cut(s) 263
BsrGI TGTACA 1 cut(s) 66
BsrI ACTGG 1 cut(s) 364
BssECI CCNNGG 1 cut(s) 201
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 148
BstAPI GCANNNNNTGC 1 cut(s) 158
BstAUI TGTACA 1 cut(s) 66
BstBI TTCGAA 1 cut(s) 263
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 2 cut(s) 42, 323
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 1 cut(s) 212
BstMAI GTCTC 1 cut(s) 236
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 116
BstSLI GKGCMC 1 cut(s) 95
BstV1I GCAGC 2 cut(s) 6, 164
BsuI GTATCC 1 cut(s) 347
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 1 cut(s) 212
Cac8I GCNNGC 1 cut(s) 95
CaiI CAGNNNCTG 1 cut(s) 158
Csp6I GTAC 1 cut(s) 67
CviAII CATG 1 cut(s) 202
CviJI RGCY 5 cut(s) 19, 57, 110, 155, 200
CviKI_1 RGCY 5 cut(s) 19, 57, 110, 155, 200
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 2 cut(s) 42, 323
Eco130I CCWWGG 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 201
EcoT22I ATGCAT 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 1 cut(s) 205
FaiI YATR 8 cut(s) 100, 107, 130, 203, 240, 242, 294, 347
FatI CATG 1 cut(s) 201
Fnu4HI GCNGC 2 cut(s) 20, 153
FokI GGATG 1 cut(s) 219
Fsp4HI GCNGC 2 cut(s) 20, 153
GluI GCNGC 2 cut(s) 20, 153
HapII CCGG 1 cut(s) 195
Hin1II CATG 1 cut(s) 205
HinfI GANTC 4 cut(s) 48, 305, 319, 360
HpaII CCGG 1 cut(s) 195
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 326
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 3 cut(s) 22, 132, 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 2 cut(s) 42, 323
Hsp92II CATG 1 cut(s) 205
LmnI GCTCC 2 cut(s) 62, 197
LpnPI CCDG 9 cut(s) 45, 55, 103, 130, 186, 192, 208, 266, 294
Lsp1109I GCAGC 2 cut(s) 6, 164
MboII GAAGA 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 95
MluCI AATT 2 cut(s) 24, 259
MnlI CCTC 2 cut(s) 37, 149
Mph1103I ATGCAT 1 cut(s) 134
MroXI GAANNNNTTC 1 cut(s) 318
MseI TTAA 3 cut(s) 12, 165, 370
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 118
Mva1269I GAATGC 1 cut(s) 255
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 1 cut(s) 158
NcoI CCATGG 1 cut(s) 201
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 2 cut(s) 122, 199
NsiI ATGCAT 1 cut(s) 134
NspV TTCGAA 1 cut(s) 263
PctI GAATGC 1 cut(s) 255
PdmI GAANNNNTTC 1 cut(s) 318
PfeI GAWTC 4 cut(s) 48, 305, 319, 360
PfoI TCCNGGA 1 cut(s) 116
PkrI GCNGC 2 cut(s) 21, 154
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 2 cut(s) 122, 199
PstNI CAGNNNCTG 1 cut(s) 158
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SaqAI TTAA 3 cut(s) 12, 165, 370
SatI GCNGC 2 cut(s) 20, 153
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 1 cut(s) 95
SetI ASST 4 cut(s) 59, 126, 141, 157
SfuI TTCGAA 1 cut(s) 263
Sse9I AATT 2 cut(s) 24, 259
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 148
TaqI TCGA 3 cut(s) 221, 255, 263
TasI AATT 2 cut(s) 24, 259
TatI WGTACW 1 cut(s) 66
TfiI GAWTC 4 cut(s) 48, 305, 319, 360
Tru1I TTAA 3 cut(s) 12, 165, 370
Tru9I TTAA 3 cut(s) 12, 165, 370
TseI GCWGC 2 cut(s) 19, 152
TspDTI ATGAA 5 cut(s) 17, 201, 239, 257, 318
TspGWI ACGGA 1 cut(s) 372
XmnI GAANNNNTTC 1 cut(s) 318
Zsp2I ATGCAT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.