RLG00000017156

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000947
Physical Location & Seq
Forward (+)
13469271 .. 13470704
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017156

Sequence Viewer

Length: 774 bp
ATGGGGAATTTTTGCAAGGATTTGTGGGTTGAGATCTTGGGTAGACTGTCATCTGAGAAAGACTTGGTGCCATGCATGACTGTGTCCAAGTTATGGCACAGAATAGCATCAGATCTTTGGGTGAGGAGATTTTGGGCGCAGTCGCCTCCTTTGGGTGTTTACTTTCGCACCATCCAGAATCCTTCGAGTCCTTTCATGCTCACCGTGGTGGACAAGCTTCAGCCCTTGAACTCCCTGTCCCGGAGGCCAATAAGACCGGAGCGATGGGGTGTCTATGGACCTTCTCTGCTATATAAAGCGTATGCCTTCCGATATAATGTTAGTTGCGGCTTGTTGGGATATGGAATAAAGTATCAAGGGTATGATTATGATGATACTGTGGAACCCTATGCAATAAGTCCTAGTTCTGATGTCTTGTTCTTTGGCACTCCCAACTTGATTAGTTGCTACCACCTCAAAAGCAAAAAGTACAAGCCCGTGTGTCACCTATCTGCCTCTAAAATTGTACCTGATTACTTCTGGGTATTGCGTGCTTGCTTCGTACCTTTCTACCAGTTAGGAAACAAAGCAGTGGTTCCTGAGGGGAAGGGCATAGAAATCTTGACCGCAGAAGCACAATGTGAAGAAGAGAAAGATGTTGACAAAGTTGAAGTGATAAACGTCAAATTATGTGATCGTCATAAAAAGCCGTTGCCACCGTTGATTTATCCTAGCGAAATTACTGAAATGTATTTGGAATTTGAGCGTCCCAATTACGGCTCTTATTTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

258

Amino Acids

29.65

Weight (kDa)

8.5

Isoelectric Point (pI)

60.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 7 - 44 8.1e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 67
AccB7I CCANNNNNTGG 1 cut(s) 93
AccI GTMKAC 1 cut(s) 43
AciI CCGC 2 cut(s) 327, 606
AcsI RAATTY 2 cut(s) 7, 737
AcuI CTGAAG 1 cut(s) 203
AdeI CACNNNGTG 1 cut(s) 620
AfaI GTAC 3 cut(s) 470, 507, 543
AfiI CCNNNNNNNGG 4 cut(s) 93, 152, 240, 755
AgsI TTSAA 2 cut(s) 229, 650
AleI CACNNNNGTG 1 cut(s) 206
AloI GAACNNNNNNTCC 2 cut(s) 221, 253
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
AoxI GGCC 1 cut(s) 245
ApoI RAATTY 2 cut(s) 7, 737
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 1 cut(s) 278
AsuC2I CCSGG 1 cut(s) 241
AsuHPI GGTGA 3 cut(s) 133, 193, 476
AvaII GGWCC 1 cut(s) 278
AxyI CCTNAGG 1 cut(s) 579
BanI GGYRCC 1 cut(s) 67
BccI CCATC 2 cut(s) 179, 258
BceAI ACGGC 2 cut(s) 673, 772
BcnI CCSGG 1 cut(s) 241
BfaI CTAG 2 cut(s) 402, 711
BglII AGATCT 2 cut(s) 33, 112
BisI GCNGC 1 cut(s) 328
BlsI GCNGC 1 cut(s) 329
Bme1390I CCNGG 1 cut(s) 241
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 3 cut(s) 69, 384, 576
BmrFI CCNGG 1 cut(s) 241
BmsI GCATC 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 204
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 4 cut(s) 93, 152, 240, 755
Bse1I ACTGG 1 cut(s) 553
Bse21I CCTNAGG 1 cut(s) 579
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 4 cut(s) 93, 152, 240, 755
BseMII CTCAG 2 cut(s) 45, 570
BseNI ACTGG 1 cut(s) 553
BseRI GAGGAG 1 cut(s) 139
BshFI GGCC 1 cut(s) 247
BshNI GGYRCC 1 cut(s) 67
BsiSI CCGG 2 cut(s) 241, 257
BslFI GGGAC 2 cut(s) 223, 732
BslI CCNNNNNNNGG 4 cut(s) 93, 152, 240, 755
BsmFI GGGAC 2 cut(s) 223, 732
BsnI GGCC 1 cut(s) 247
Bsp143I GATC 3 cut(s) 33, 112, 673
BspACI CCGC 2 cut(s) 327, 606
BspANI GGCC 1 cut(s) 247
BspCNI CTCAG 2 cut(s) 46, 571
BspLI GGNNCC 3 cut(s) 69, 384, 576
BspT107I GGYRCC 1 cut(s) 67
BsrI ACTGG 1 cut(s) 553
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 3 cut(s) 33, 112, 673
Bst4CI ACNGT 5 cut(s) 48, 82, 205, 379, 699
Bst6I CTCTTC 1 cut(s) 621
BstC8I GCNNGC 2 cut(s) 531, 535
BstDEI CTNAG 2 cut(s) 54, 579
BstDSI CCRYGG 1 cut(s) 204
BstF5I GGATG 1 cut(s) 171
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 3 cut(s) 36, 115, 676
BstMBI GATC 3 cut(s) 33, 112, 673
BstSCI CCNGG 1 cut(s) 239
BstX2I RGATCY 2 cut(s) 33, 112
BstYI RGATCY 2 cut(s) 33, 112
Bsu36I CCTNAGG 1 cut(s) 579
BsuRI GGCC 1 cut(s) 247
BtgI CCRYGG 1 cut(s) 204
BtgZI GCGATG 1 cut(s) 277
BtsCI GGATG 1 cut(s) 171
BtsI GCAGTG 1 cut(s) 576
BtsIMutI CAGTG 1 cut(s) 576
Cac8I GCNNGC 2 cut(s) 531, 535
CfoI GCGC 1 cut(s) 139
Cfr13I GGNCC 1 cut(s) 278
CseI GACGC 1 cut(s) 734
Csp6I GTAC 3 cut(s) 469, 506, 542
CviAII CATG 3 cut(s) 72, 76, 196
CviJI RGCY 7 cut(s) 217, 223, 247, 330, 475, 688, 759
CviKI_1 RGCY 7 cut(s) 217, 223, 247, 330, 475, 688, 759
CviQI GTAC 3 cut(s) 469, 506, 542
DdeI CTNAG 2 cut(s) 54, 579
DpnI GATC 3 cut(s) 35, 114, 675
DpnII GATC 3 cut(s) 33, 112, 673
DraIII CACNNNGTG 1 cut(s) 620
Eam1104I CTCTTC 1 cut(s) 621
EarI CTCTTC 1 cut(s) 621
Eco47I GGWCC 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 203
Eco81I CCTNAGG 1 cut(s) 579
EcoT22I ATGCAT 1 cut(s) 77
FaeI CATG 3 cut(s) 75, 79, 199
FaqI GGGAC 2 cut(s) 223, 732
FatI CATG 3 cut(s) 71, 75, 195
FblI GTMKAC 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 328
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 328
FspBI CTAG 2 cut(s) 402, 711
GlaI GCGC 1 cut(s) 138
GluI GCNGC 1 cut(s) 328
HaeIII GGCC 1 cut(s) 247
HapII CCGG 2 cut(s) 241, 257
HgaI GACGC 1 cut(s) 734
HhaI GCGC 1 cut(s) 139
Hin1II CATG 3 cut(s) 75, 79, 199
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HincII GTYRAC 1 cut(s) 640
HindII GTYRAC 1 cut(s) 640
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 2 cut(s) 178, 187
HpaII CCGG 2 cut(s) 241, 257
HphI GGTGA 3 cut(s) 133, 193, 476
Hpy166II GTNNAC 4 cut(s) 44, 160, 211, 640
Hpy188I TCNGA 4 cut(s) 55, 112, 311, 409
Hpy188III TCNNGA 3 cut(s) 175, 578, 601
Hpy8I GTNNAC 4 cut(s) 44, 160, 211, 640
HpyAV CCTTC 4 cut(s) 192, 291, 316, 580
HpyCH4III ACNGT 5 cut(s) 48, 82, 205, 379, 699
HpyCH4IV ACGT 1 cut(s) 660
HpyCH4V TGCA 3 cut(s) 15, 75, 392
HpyF3I CTNAG 2 cut(s) 54, 579
HpySE526I ACGT 1 cut(s) 660
Hsp92II CATG 3 cut(s) 75, 79, 199
HspAI GCGC 1 cut(s) 137
Kzo9I GATC 3 cut(s) 33, 112, 673
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 8 cut(s) 188, 248, 254, 270, 505, 522, 566, 591
LweI GCATC 1 cut(s) 116
MaeI CTAG 2 cut(s) 402, 711
MaeII ACGT 1 cut(s) 660
MaeIII GTNAC 1 cut(s) 482
MalI GATC 3 cut(s) 35, 114, 675
MboI GATC 3 cut(s) 33, 112, 673
MboII GAAGA 2 cut(s) 635, 638
MflI RGATCY 2 cut(s) 33, 112
MluCI AATT 6 cut(s) 7, 501, 665, 717, 737, 751
MlyI GAGTC 1 cut(s) 196
MnlI CCTC 6 cut(s) 117, 156, 237, 464, 505, 574
Mph1103I ATGCAT 1 cut(s) 77
MslI CAYNNNNRTG 2 cut(s) 80, 206
MspI CCGG 2 cut(s) 241, 257
MspR9I CCNGG 1 cut(s) 241
NciI CCSGG 1 cut(s) 241
NdeII GATC 3 cut(s) 33, 112, 673
NlaIII CATG 3 cut(s) 75, 79, 199
NlaIV GGNNCC 3 cut(s) 69, 384, 576
NmuCI GTSAC 1 cut(s) 482
NsiI ATGCAT 1 cut(s) 77
OliI CACNNNNGTG 1 cut(s) 206
PfeI GAWTC 1 cut(s) 178
PflFI GACNNNGTC 1 cut(s) 82
PflMI CCANNNNNTGG 1 cut(s) 93
PfoI TCCNGGA 1 cut(s) 239
PkrI GCNGC 1 cut(s) 329
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
PspN4I GGNNCC 3 cut(s) 69, 384, 576
PspPI GGNCC 1 cut(s) 278
PsuI RGATCY 2 cut(s) 33, 112
PsyI GACNNNGTC 1 cut(s) 82
RsaI GTAC 3 cut(s) 470, 507, 543
RsaNI GTAC 3 cut(s) 469, 506, 542
RseI CAYNNNNRTG 2 cut(s) 80, 206
SatI GCNGC 1 cut(s) 328
Sau3AI GATC 3 cut(s) 33, 112, 673
Sau96I GGNCC 1 cut(s) 278
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 241
SetI ASST 7 cut(s) 219, 283, 456, 489, 511, 547, 663
SfaNI GCATC 1 cut(s) 116
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 2 cut(s) 80, 206
Sse9I AATT 6 cut(s) 7, 501, 665, 717, 737, 751
SsiI CCGC 2 cut(s) 327, 606
SspMI CTAG 2 cut(s) 402, 711
StyD4I CCNGG 1 cut(s) 239
TaaI ACNGT 5 cut(s) 48, 82, 205, 379, 699
TaiI ACGT 1 cut(s) 663
TaqI TCGA 1 cut(s) 185
TasI AATT 6 cut(s) 7, 501, 665, 717, 737, 751
TatI WGTACW 1 cut(s) 468
TauI GCSGC 1 cut(s) 330
TfiI GAWTC 1 cut(s) 178
TscAI CASTG 1 cut(s) 576
TseFI GTSAC 1 cut(s) 482
Tsp45I GTSAC 1 cut(s) 482
TspDTI ATGAA 1 cut(s) 184
TspRI CASTG 1 cut(s) 576
Tth111I GACNNNGTC 1 cut(s) 82
Van91I CCANNNNNTGG 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 278
XapI RAATTY 2 cut(s) 7, 737
XmiI GTMKAC 1 cut(s) 43
XspI CTAG 2 cut(s) 402, 711
Zsp2I ATGCAT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.