Rmu_sc0008034.1_g000006

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008034.1
OG0000947
Physical Location & Seq
Forward (+)
15845 .. 16126
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008034.1_g000006.1.cds

Sequence Viewer

Length: 282 bp
atgcactttgtttacttgcggggcaagctatacagcatagccctatcctggaaccttttatgcattgacctcaatactgttgcagcttctgcccttgaacttcatgtttcagaggatgataagaacggatccatgggatgtcttggggtgtcgatggatcgtctctgttatatgaagggaatgccggataattcgaaggactcctactatctggcagtctggtattatgatgatgaatctggggaatggattctcagatatagtgtctcttgtcgcatatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

93

Amino Acids

10.66

Weight (kDa)

4.88

Isoelectric Point (pI)

38.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 19
AclWI GGATC 3 cut(s) 123, 136, 165
AfiI CCNNNNNNNGG 1 cut(s) 48
AgsI TTSAA 1 cut(s) 98
AjnI CCWGG 1 cut(s) 47
AluBI AGCT 2 cut(s) 28, 86
AluI AGCT 2 cut(s) 28, 86
Alw26I GTCTC 2 cut(s) 167, 271
AlwI GGATC 3 cut(s) 123, 136, 165
AlwNI CAGNNNCTG 1 cut(s) 89
ApeKI GCWGC 1 cut(s) 83
Asp700I GAANNNNTTC 1 cut(s) 249
AsuII TTCGAA 1 cut(s) 194
BamHI GGATCC 1 cut(s) 128
BarI GAAGNNNNNNTAC 2 cut(s) 188, 220
BbvI GCAGC 1 cut(s) 95
BccI CCATC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 49
BcoDI GTCTC 2 cut(s) 167, 271
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 49
BmiI GGNNCC 2 cut(s) 53, 130
BmrFI CCNGG 1 cut(s) 49
Bpu14I TTCGAA 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 49
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 2 cut(s) 121, 143
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 268
BseXI GCAGC 1 cut(s) 95
BsiSI CCGG 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 2 cut(s) 167, 271
BsmBI CGTCTC 1 cut(s) 167
BsmI GAATGC 1 cut(s) 186
Bsp119I TTCGAA 1 cut(s) 194
Bsp143I GATC 2 cut(s) 128, 157
Bsp19I CCATGG 1 cut(s) 132
BspACI CCGC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 267
BspLI GGNNCC 2 cut(s) 53, 130
BspPI GGATC 3 cut(s) 123, 136, 165
BspT104I TTCGAA 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 2 cut(s) 128, 157
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 49
Bst4CI ACNGT 1 cut(s) 79
BstAPI GCANNNNNTGC 1 cut(s) 89
BstBI TTCGAA 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 254
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 2 cut(s) 121, 143
BstKTI GATC 2 cut(s) 131, 160
BstMAI GTCTC 2 cut(s) 167, 271
BstMBI GATC 2 cut(s) 128, 157
BstMWI GCNNNNNNNGC 2 cut(s) 25, 89
BstNI CCWGG 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 95
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BtgI CCRYGG 1 cut(s) 132
BtsCI GGATG 2 cut(s) 121, 143
Cac8I GCNNGC 1 cut(s) 26
CaiI CAGNNNCTG 1 cut(s) 89
CviAII CATG 2 cut(s) 104, 133
CviJI RGCY 3 cut(s) 28, 41, 86
CviKI_1 RGCY 3 cut(s) 28, 41, 86
DdeI CTNAG 1 cut(s) 254
DpnI GATC 2 cut(s) 130, 159
DpnII GATC 2 cut(s) 128, 157
Eco130I CCWWGG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 47
EcoT14I CCWWGG 1 cut(s) 132
EcoT22I ATGCAT 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 132
Esp3I CGTCTC 1 cut(s) 167
FaeI CATG 2 cut(s) 107, 136
FatI CATG 2 cut(s) 103, 132
FauI CCCGC 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 2 cut(s) 128, 150
Fsp4HI GCNGC 1 cut(s) 84
GluI GCNGC 1 cut(s) 84
HapII CCGG 1 cut(s) 185
Hin1II CATG 2 cut(s) 107, 136
HinfI GANTC 3 cut(s) 200, 236, 250
HpaII CCGG 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 2 cut(s) 112, 257
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 2 cut(s) 169, 190
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4V TGCA 3 cut(s) 4, 63, 83
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 89
HpyF3I CTNAG 1 cut(s) 254
Hsp92II CATG 2 cut(s) 107, 136
Kzo9I GATC 2 cut(s) 128, 157
LpnPI CCDG 6 cut(s) 34, 61, 197, 198, 205, 225
Lsp1109I GCAGC 1 cut(s) 95
MalI GATC 2 cut(s) 130, 159
MboI GATC 2 cut(s) 128, 157
MflI RGATCY 1 cut(s) 128
MluCI AATT 1 cut(s) 190
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 2 cut(s) 80, 106
Mph1103I ATGCAT 1 cut(s) 65
MroXI GAANNNNTTC 1 cut(s) 249
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 49
Mva1269I GAATGC 1 cut(s) 186
MvaI CCWGG 1 cut(s) 49
MwoI GCNNNNNNNGC 2 cut(s) 25, 89
NcoI CCATGG 1 cut(s) 132
NdeII GATC 2 cut(s) 128, 157
NlaIII CATG 2 cut(s) 107, 136
NlaIV GGNNCC 2 cut(s) 53, 130
NsiI ATGCAT 1 cut(s) 65
NspV TTCGAA 1 cut(s) 194
PctI GAATGC 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 2 cut(s) 236, 250
PfoI TCCNGGA 1 cut(s) 47
PkrI GCNGC 1 cut(s) 85
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 47
PspN4I GGNNCC 2 cut(s) 53, 130
PstNI CAGNNNCTG 1 cut(s) 89
PsuI RGATCY 1 cut(s) 128
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 2 cut(s) 128, 157
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 49
SetI ASST 4 cut(s) 30, 57, 72, 88
SfuI TTCGAA 1 cut(s) 194
Sse9I AATT 1 cut(s) 190
SsiI CCGC 1 cut(s) 19
StyD4I CCNGG 1 cut(s) 47
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 79
TaqI TCGA 2 cut(s) 152, 194
TasI AATT 1 cut(s) 190
TfiI GAWTC 2 cut(s) 236, 250
TseI GCWGC 1 cut(s) 83
TspDTI ATGAA 3 cut(s) 92, 188, 249
TspGWI ACGGA 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 249
Zsp2I ATGCAT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.