Rh1BG085900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000947
Physical Location & Seq
Forward (+)
13568500 .. 13568811
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG085900.1

Sequence Viewer

Length: 312 bp
ATGGAAAAAGATTCGAGGCCGAACAGGTCCATGATGAGCACGGTGGGGACAGCGATAATGAAAGTTGATCATTTTGCGAGGCGTGTGACGACGGCAGCATCGTGGTCAACAAGGGCAGAAACATCAGGTGATGGGAGCTCGATGATGTCCAAACTGCATGGGAAGGCTGATGCATCCTTGGAAGTGTGCGATGGGACGACGAAGATTGTGACAGTGAAGTTTTGGTGGGTGACGAGTTGTTTCCCGAGCTCAATGACAGGGATGATATGGCACATACCTAGGTTGCAGAGTAGTGCAGCATGTTGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.36

Weight (kDa)

9.3

Isoelectric Point (pI)

52.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 2 cut(s) 138, 249
AluI AGCT 2 cut(s) 138, 249
Alw21I GWGCWC 3 cut(s) 41, 140, 251
Ama87I CYCGRG 1 cut(s) 244
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 2 cut(s) 95, 296
AspA2I CCTAGG 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 27
AsuHPI GGTGA 2 cut(s) 140, 241
AvaI CYCGRG 1 cut(s) 244
AvaII GGWCC 1 cut(s) 27
AvrII CCTAGG 1 cut(s) 278
BanII GRGCYC 2 cut(s) 140, 251
Bbv12I GWGCWC 3 cut(s) 41, 140, 251
BbvI GCAGC 2 cut(s) 107, 308
BccI CCATC 2 cut(s) 125, 185
BceAI ACGGC 1 cut(s) 108
BclI TGATCA 1 cut(s) 67
BfaI CTAG 1 cut(s) 279
BisI GCNGC 2 cut(s) 96, 297
BlnI CCTAGG 1 cut(s) 278
BlsI GCNGC 2 cut(s) 97, 298
Bme18I GGWCC 1 cut(s) 27
BmeT110I CYCGRG 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 27
BmsI GCATC 3 cut(s) 107, 160, 182
BsaJI CCNNGG 2 cut(s) 177, 278
BseDI CCNNGG 2 cut(s) 177, 278
BseGI GGATG 2 cut(s) 173, 267
BseXI GCAGC 2 cut(s) 107, 308
BshFI GGCC 1 cut(s) 19
BsiHKAI GWGCWC 3 cut(s) 41, 140, 251
BsiHKCI CYCGRG 1 cut(s) 244
BslFI GGGAC 2 cut(s) 61, 208
BsmFI GGGAC 2 cut(s) 61, 208
BsnI GGCC 1 cut(s) 19
BsoBI CYCGRG 1 cut(s) 244
Bsp1286I GDGCHC 3 cut(s) 41, 140, 251
Bsp143I GATC 1 cut(s) 67
BspANI GGCC 1 cut(s) 19
BssECI CCNNGG 2 cut(s) 177, 278
BssMI GATC 1 cut(s) 67
BssT1I CCWWGG 2 cut(s) 177, 278
Bst4CI ACNGT 2 cut(s) 43, 214
BstF5I GGATG 2 cut(s) 173, 267
BstKTI GATC 1 cut(s) 70
BstMBI GATC 1 cut(s) 67
BstNSI RCATGY 1 cut(s) 303
BstV1I GCAGC 2 cut(s) 107, 308
BsuRI GGCC 1 cut(s) 19
BtgZI GCGATG 1 cut(s) 204
BtsCI GGATG 2 cut(s) 173, 267
BtsIMutI CAGTG 1 cut(s) 219
Cfr13I GGNCC 1 cut(s) 27
CviAII CATG 3 cut(s) 31, 158, 300
CviJI RGCY 4 cut(s) 19, 138, 167, 249
CviKI_1 RGCY 4 cut(s) 19, 138, 167, 249
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
Ecl136II GAGCTC 2 cut(s) 138, 249
Eco130I CCWWGG 2 cut(s) 177, 278
Eco24I GRGCYC 2 cut(s) 140, 251
Eco47I GGWCC 1 cut(s) 27
Eco53kI GAGCTC 2 cut(s) 138, 249
Eco88I CYCGRG 1 cut(s) 244
EcoICRI GAGCTC 2 cut(s) 138, 249
EcoT14I CCWWGG 2 cut(s) 177, 278
EcoT22I ATGCAT 1 cut(s) 175
EcoT38I GRGCYC 2 cut(s) 140, 251
ErhI CCWWGG 2 cut(s) 177, 278
FaeI CATG 3 cut(s) 34, 161, 303
FaiI YATR 5 cut(s) 32, 159, 268, 275, 301
FaqI GGGAC 2 cut(s) 61, 208
FatI CATG 3 cut(s) 30, 157, 299
FbaI TGATCA 1 cut(s) 67
Fnu4HI GCNGC 2 cut(s) 96, 297
FokI GGATG 2 cut(s) 160, 274
FriOI GRGCYC 2 cut(s) 140, 251
Fsp4HI GCNGC 2 cut(s) 96, 297
FspBI CTAG 1 cut(s) 279
GluI GCNGC 2 cut(s) 96, 297
HaeIII GGCC 1 cut(s) 19
Hin1II CATG 3 cut(s) 34, 161, 303
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HinfI GANTC 1 cut(s) 11
HphI GGTGA 2 cut(s) 140, 241
Hpy166II GTNNAC 1 cut(s) 108
Hpy188III TCNNGA 1 cut(s) 244
Hpy8I GTNNAC 1 cut(s) 108
Hpy99I CGWCG 2 cut(s) 94, 202
HpyAV CCTTC 1 cut(s) 157
HpyCH4III ACNGT 2 cut(s) 43, 214
HpyCH4V TGCA 4 cut(s) 157, 173, 286, 296
Hsp92II CATG 3 cut(s) 34, 161, 303
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 1 cut(s) 67
LmnI GCTCC 1 cut(s) 135
LpnPI CCDG 3 cut(s) 10, 111, 243
Lsp1109I GCAGC 2 cut(s) 107, 308
LweI GCATC 3 cut(s) 107, 160, 182
MaeI CTAG 1 cut(s) 279
MaeIII GTNAC 3 cut(s) 85, 208, 229
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 1 cut(s) 214
MhlI GDGCHC 3 cut(s) 41, 140, 251
MnlI CCTC 2 cut(s) 9, 72
Mph1103I ATGCAT 1 cut(s) 175
NdeII GATC 1 cut(s) 67
NlaIII CATG 3 cut(s) 34, 161, 303
NmuCI GTSAC 3 cut(s) 85, 208, 229
NsiI ATGCAT 1 cut(s) 175
NspI RCATGY 1 cut(s) 303
PcsI WCGNNNNNNNCGW 1 cut(s) 98
PfeI GAWTC 1 cut(s) 11
PkrI GCNGC 2 cut(s) 97, 298
Psp124BI GAGCTC 2 cut(s) 140, 251
PspPI GGNCC 1 cut(s) 27
SacI GAGCTC 2 cut(s) 140, 251
SatI GCNGC 2 cut(s) 96, 297
Sau3AI GATC 1 cut(s) 67
Sau96I GGNCC 1 cut(s) 27
SduI GDGCHC 3 cut(s) 41, 140, 251
SetI ASST 6 cut(s) 29, 130, 140, 251, 280, 284
SfaNI GCATC 3 cut(s) 107, 160, 182
SinI GGWCC 1 cut(s) 27
SspMI CTAG 1 cut(s) 279
SstI GAGCTC 2 cut(s) 140, 251
StyI CCWWGG 2 cut(s) 177, 278
TaaI ACNGT 2 cut(s) 43, 214
TaqI TCGA 2 cut(s) 14, 140
TfiI GAWTC 1 cut(s) 11
TscAI CASTG 1 cut(s) 219
TseFI GTSAC 3 cut(s) 85, 208, 229
TseI GCWGC 2 cut(s) 95, 296
Tsp45I GTSAC 3 cut(s) 85, 208, 229
TspDTI ATGAA 1 cut(s) 74
TspRI CASTG 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 27
XceI RCATGY 1 cut(s) 303
XmaJI CCTAGG 1 cut(s) 278
XspI CTAG 1 cut(s) 279
Zsp2I ATGCAT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.