Prupe.7G151200_v2.0.a1

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000947
Physical Location & Seq
Forward (+)
16227552 .. 16230259
2708 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G151200.2

Sequence Viewer

Length: 1554 bp
ATGACTACTGATCGTCTCTGTAACCTGTCAGTGGTGTCCTCGCCCGCTGCCGTTGCCGTTGCGGATCAGGATTCGGGTATGGGGAATTTATCTTTATGTGATGATTTGTTGTGCAATATTTTGTTTAGATTATCACAGAAGGATCTGGTGAAATGCAAGATGGTGGCCAAGTCATGGCATCAAATAATCTCTCATGTTTGGTTGCGGAGATTTTGGTCGCAGTCTCCTGTTTTGGGTCTTTTCTTCCGCACTCTGCACGCACCTGATGATATTTGTGTTAAACTCAGTCACGCCTATCTAGATCTTAATTATATCTACTTGCACAAACCAAGTGAATTAGTTTCCCGCGAGAGCATGTTGCGCTTATATGAAAATCAGACGCGCGACACCTCTGATCGTAACCTCGACTGTTGTAATGGCTTAATTCTGTTGTTCAACCCACAGACTTATCAGTTCTGTGTCTCCAACCCCATCACCAGACAACATGTCTCCATACCTAAAGCATTTTCACATGAACATGACCATTTTTGTGCTGCCTTGGTTTTTGACCCTATTGAATCCAATCACTACCGAGTTGTCCGAATTGATTATTCTCAACAACAATCATGTTGCTACTCGACCTTGACCTCAAACTCAACCCTAACCCAAACCCTGGTGCACATTGACATATTTTCGTCGCAATCTGGAGAATGGATTCGACATGGATTGCAACTCGACCCCATGTTTATTGAGGGGTTCAAAAGTTCCAAGTTTTGCAGTCATTTTGTGTACTTGCGTGGGGCTATATACAGCCTAGCTTATTCAGGGAAACTTTTGTGTATTGACCTGAATACTATCAAAGCTCGAGCCTTTGAACTCCCTCATGTCTCTGAAGACGACGACAACCACGATGTAACAATGGCATGTCTTGGGGTGTCAATGGAACTTGTCTGTTATATAAAGCGTGATAATTCAAATGTTTTTCGCTTTTGGTCTTACGATGATCGATGCGAATCTGGTGATAAATGGACTCTCAGATATACTCTTTTTGGGAAGGGATTGGAATGGCGCTTTCCGTGTGATGGTACTCCAGTGTTGAAACCACATGCAATAAGTCCATCTTCTCATGAATTTTTCTTTGGCACTTCAGAAGGGATCTTAAGCTACAACTTCGAAAGCAGAATGTTGAAATTCGTCCATGAATCAATGTTCAAAATAGCTCCACCTGGTTCTCACTTTCCTTCTTTTACACTACGTGCTTGCTTGATAAGTTTGGGTGAGAGGAATGCCGGGTCTACTCAACTACCAGTGGACAGTTCCAAGGGAGCAAAGATTTTAAGTGCGGAAGCACCATGTCAATGTGATGAACTAAATAATAGCCCAACACAAATGGGCTTTGTCGGCAAAGACTTCATAGTTCGTAACCAAAGAGGGTTTACTCTTCCTAGTGAAATGAAATTATGTGCAGCAATGGAGCTACAGGAGGCTTCCCCGAGTCCGATATTCCAATTTGCTAGGATCAAATCAAAGATCGTGTCTGCAGAGCCTGTAAAGCTGGCTCCATCACGGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

518

Amino Acids

58.49

Weight (kDa)

6.82

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 174, 652
AccI GTMKAC 1 cut(s) 1274
AccII CGCG 3 cut(s) 348, 382, 384
AciI CCGC 6 cut(s) 45, 62, 205, 247, 346, 1322
AclWI GGATC 4 cut(s) 72, 150, 1142, 1505
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 3 cut(s) 85, 1109, 1169
AcuI CTGAAG 2 cut(s) 891, 1110
AdeI CACNNNGTG 1 cut(s) 1235
AfaI GTAC 2 cut(s) 770, 1066
AfiI CCNNNNNNNGG 6 cut(s) 31, 174, 233, 652, 1061, 1547
AflII CTTAAG 1 cut(s) 1138
AflIII ACRYGT 1 cut(s) 484
AgsI TTSAA 8 cut(s) 436, 557, 739, 854, 954, 1078, 1168, 1192
AhdI GACNNNNNGTC 1 cut(s) 485
AjnI CCWGG 2 cut(s) 651, 1204
AjuI GAANNNNNNNTTGG 2 cut(s) 1101, 1133
AluBI AGCT 6 cut(s) 797, 842, 1143, 1199, 1456, 1534
AluI AGCT 6 cut(s) 797, 842, 1143, 1199, 1456, 1534
Alw21I GWGCWC 1 cut(s) 660
Alw26I GTCTC 5 cut(s) 20, 228, 466, 493, 871
Alw44I GTGCAC 1 cut(s) 656
AlwI GGATC 4 cut(s) 72, 150, 1142, 1505
AlwNI CAGNNNCTG 1 cut(s) 1526
Ama87I CYCGRG 2 cut(s) 843, 1471
AoxI GGCC 1 cut(s) 165
ApaLI GTGCAC 1 cut(s) 656
ApeKI GCWGC 3 cut(s) 47, 533, 1445
ApoI RAATTY 3 cut(s) 85, 1109, 1169
ArsI GACNNNNNNTTYG 2 cut(s) 1499, 1531
Asp700I GAANNNNTTC 1 cut(s) 693
AspLEI GCGC 3 cut(s) 363, 384, 1050
AsuC2I CCSGG 1 cut(s) 1270
AsuHPI GGTGA 4 cut(s) 160, 466, 1010, 1268
AsuII TTCGAA 1 cut(s) 1152
AvaI CYCGRG 2 cut(s) 843, 1471
BaeGI GKGCMC 1 cut(s) 660
BaeI ACNNNNGTAYC 2 cut(s) 1056, 1089
BalI TGGCCA 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 879
Bbv12I GWGCWC 1 cut(s) 660
BbvI GCAGC 3 cut(s) 34, 520, 1457
BccI CCATC 5 cut(s) 154, 479, 1055, 1105, 1549
BceAI ACGGC 2 cut(s) 35, 41
BciT130I CCWGG 2 cut(s) 653, 1206
BcnI CCSGG 1 cut(s) 1270
BcoDI GTCTC 5 cut(s) 20, 228, 466, 493, 871
BfaI CTAG 4 cut(s) 299, 794, 1425, 1494
BfmI CTRYAG 2 cut(s) 1457, 1518
BfoI RGCGCY 1 cut(s) 1051
BfrI CTTAAG 1 cut(s) 1138
BglII AGATCT 1 cut(s) 301
BisI GCNGC 3 cut(s) 48, 534, 1446
BlsI GCNGC 3 cut(s) 49, 535, 1447
Bme1390I CCNGG 3 cut(s) 653, 1206, 1270
BmeRI GACNNNNNGTC 1 cut(s) 485
BmeT110I CYCGRG 2 cut(s) 843, 1471
BmiI GGNNCC 1 cut(s) 1539
BmrFI CCNGG 3 cut(s) 653, 1206, 1270
BmsI GCATC 2 cut(s) 187, 977
BpiI GAAGAC 1 cut(s) 879
BpmI CTGGAG 2 cut(s) 705, 1053
Bpu14I TTCGAA 1 cut(s) 1152
BpuMI CCSGG 1 cut(s) 1270
Bsa29I ATCGAT 1 cut(s) 985
BsaAI YACGTR 1 cut(s) 1235
BsaBI GATNNNNATC 1 cut(s) 991
BsaJI CCNNGG 3 cut(s) 537, 651, 1299
Bsc4I CCNNNNNNNGG 6 cut(s) 31, 174, 233, 652, 1061, 1547
Bse1I ACTGG 2 cut(s) 1070, 1286
Bse3DI GCAATG 1 cut(s) 1455
Bse8I GATNNNNATC 1 cut(s) 991
BseBI CCWGG 2 cut(s) 653, 1206
BseCI ATCGAT 1 cut(s) 985
BseDI CCNNGG 3 cut(s) 537, 651, 1299
BseJI GATNNNNATC 1 cut(s) 991
BseLI CCNNNNNNNGG 6 cut(s) 31, 174, 233, 652, 1061, 1547
BseMI GCAATG 1 cut(s) 1455
BseMII CTCAG 2 cut(s) 298, 1027
BseNI ACTGG 2 cut(s) 1070, 1286
BseSI GKGCMC 1 cut(s) 660
BseXI GCAGC 3 cut(s) 34, 520, 1457
BsgI GTGCAG 2 cut(s) 239, 1464
Bsh1236I CGCG 3 cut(s) 348, 382, 384
BshFI GGCC 1 cut(s) 167
BshVI ATCGAT 1 cut(s) 985
BsiHKAI GWGCWC 1 cut(s) 660
BsiHKCI CYCGRG 2 cut(s) 843, 1471
BsiSI CCGG 1 cut(s) 1269
BslI CCNNNNNNNGG 6 cut(s) 31, 174, 233, 652, 1061, 1547
BsmAI GTCTC 5 cut(s) 20, 228, 466, 493, 871
BsmBI CGTCTC 1 cut(s) 20
BsmI GAATGC 1 cut(s) 1270
BsnI GGCC 1 cut(s) 167
BsoBI CYCGRG 2 cut(s) 843, 1471
Bsp119I TTCGAA 1 cut(s) 1152
Bsp1286I GDGCHC 1 cut(s) 660
Bsp143I GATC 9 cut(s) 10, 64, 142, 301, 394, 982, 1134, 1497, 1509
BspACI CCGC 6 cut(s) 45, 62, 205, 247, 346, 1322
BspANI GGCC 1 cut(s) 167
BspCNI CTCAG 2 cut(s) 297, 1026
BspDI ATCGAT 1 cut(s) 985
BspFNI CGCG 3 cut(s) 348, 382, 384
BspHI TCATGA 1 cut(s) 1105
BspLI GGNNCC 1 cut(s) 1539
BspMAI CTGCAG 1 cut(s) 1522
BspPI GGATC 4 cut(s) 72, 150, 1142, 1505
BspT104I TTCGAA 1 cut(s) 1152
BspTI CTTAAG 1 cut(s) 1138
BsrDI GCAATG 1 cut(s) 1455
BsrI ACTGG 2 cut(s) 1070, 1286
BssECI CCNNGG 3 cut(s) 537, 651, 1299
BssMI GATC 9 cut(s) 10, 64, 142, 301, 394, 982, 1134, 1497, 1509
BssT1I CCWWGG 2 cut(s) 537, 1299
Bst2UI CCWGG 2 cut(s) 653, 1206
Bst4CI ACNGT 2 cut(s) 410, 1295
Bst6I CTCTTC 1 cut(s) 1425
BstAFI CTTAAG 1 cut(s) 1138
BstBAI YACGTR 1 cut(s) 1235
BstBI TTCGAA 1 cut(s) 1152
BstC8I GCNNGC 4 cut(s) 45, 258, 1240, 1536
BstDEI CTNAG 2 cut(s) 284, 1013
BstFNI CGCG 3 cut(s) 348, 382, 384
BstH2I RGCGCY 1 cut(s) 1051
BstHHI GCGC 3 cut(s) 363, 384, 1050
BstKTI GATC 9 cut(s) 13, 67, 145, 304, 397, 985, 1137, 1500, 1512
BstMAI GTCTC 5 cut(s) 20, 228, 466, 493, 871
BstMBI GATC 9 cut(s) 10, 64, 142, 301, 394, 982, 1134, 1497, 1509
BstMWI GCNNNNNNNGC 4 cut(s) 53, 360, 1380, 1531
BstNI CCWGG 2 cut(s) 653, 1206
BstNSI RCATGY 4 cut(s) 358, 488, 906, 1088
BstSCI CCNGG 3 cut(s) 651, 1204, 1268
BstSFI CTRYAG 2 cut(s) 1457, 1518
BstSLI GKGCMC 1 cut(s) 660
BstUI CGCG 3 cut(s) 348, 382, 384
BstV1I GCAGC 3 cut(s) 34, 520, 1457
BstV2I GAAGAC 1 cut(s) 879
BstX2I RGATCY 3 cut(s) 142, 301, 1134
BstYI RGATCY 3 cut(s) 142, 301, 1134
Bsu15I ATCGAT 1 cut(s) 985
BsuRI GGCC 1 cut(s) 167
BsuTUI ATCGAT 1 cut(s) 985
BtsIMutI CAGTG 3 cut(s) 36, 1077, 1293
Cac8I GCNNGC 4 cut(s) 45, 258, 1240, 1536
CaiI CAGNNNCTG 1 cut(s) 1526
CciI TCATGA 1 cut(s) 1105
CfoI GCGC 3 cut(s) 363, 384, 1050
ClaI ATCGAT 1 cut(s) 985
CseI GACGC 1 cut(s) 388
CsiI ACCWGGT 1 cut(s) 1204
Csp6I GTAC 2 cut(s) 769, 1065
CviQI GTAC 2 cut(s) 769, 1065
DdeI CTNAG 2 cut(s) 284, 1013
DpnI GATC 9 cut(s) 12, 66, 144, 303, 396, 984, 1136, 1499, 1511
DpnII GATC 9 cut(s) 10, 64, 142, 301, 394, 982, 1134, 1497, 1509
DraIII CACNNNGTG 1 cut(s) 1235
DriI GACNNNNNGTC 1 cut(s) 485
EaeI YGGCCR 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 1425
Eam1105I GACNNNNNGTC 1 cut(s) 485
EarI CTCTTC 1 cut(s) 1425
Eco130I CCWWGG 2 cut(s) 537, 1299
Eco57I CTGAAG 2 cut(s) 891, 1110
Eco88I CYCGRG 2 cut(s) 843, 1471
EcoRII CCWGG 2 cut(s) 651, 1204
EcoT14I CCWWGG 2 cut(s) 537, 1299
ErhI CCWWGG 2 cut(s) 537, 1299
Esp3I CGTCTC 1 cut(s) 20
FalI AAGNNNNNCTT 2 cut(s) 1084, 1116
FauI CCCGC 2 cut(s) 52, 353
FblI GTMKAC 1 cut(s) 1274
Fnu4HI GCNGC 3 cut(s) 48, 534, 1446
Fsp4HI GCNGC 3 cut(s) 48, 534, 1446
FspBI CTAG 4 cut(s) 299, 794, 1425, 1494
GlaI GCGC 3 cut(s) 362, 383, 1049
GluI GCNGC 3 cut(s) 48, 534, 1446
GsuI CTGGAG 2 cut(s) 705, 1053
HaeII RGCGCY 1 cut(s) 1051
HaeIII GGCC 1 cut(s) 167
HapII CCGG 1 cut(s) 1269
HgaI GACGC 1 cut(s) 388
HhaI GCGC 3 cut(s) 363, 384, 1050
Hin6I GCGC 3 cut(s) 361, 382, 1048
HinP1I GCGC 3 cut(s) 361, 382, 1048
HinfI GANTC 7 cut(s) 71, 557, 694, 992, 1009, 1181, 1474
HpaII CCGG 1 cut(s) 1269
HphI GGTGA 4 cut(s) 160, 466, 1010, 1268
Hpy166II GTNNAC 5 cut(s) 658, 769, 1275, 1291, 1416
Hpy188I TCNGA 7 cut(s) 378, 394, 581, 871, 1016, 1129, 1479
Hpy188III TCNNGA 4 cut(s) 68, 299, 684, 1106
Hpy8I GTNNAC 5 cut(s) 658, 769, 1275, 1291, 1416
Hpy99I CGWCG 2 cut(s) 679, 881
HpyAV CCTTC 4 cut(s) 133, 1027, 1124, 1230
HpyCH4III ACNGT 2 cut(s) 410, 1295
HpyCH4IV ACGT 1 cut(s) 1234
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 360, 1380, 1531
HpyF3I CTNAG 2 cut(s) 284, 1013
HpySE526I ACGT 1 cut(s) 1234
HspAI GCGC 3 cut(s) 361, 382, 1048
Kzo9I GATC 9 cut(s) 10, 64, 142, 301, 394, 982, 1134, 1497, 1509
LmnI GCTCC 4 cut(s) 1204, 1304, 1453, 1543
Lsp1109I GCAGC 3 cut(s) 34, 520, 1457
LweI GCATC 2 cut(s) 187, 977
MabI ACCWGGT 1 cut(s) 1204
MaeI CTAG 4 cut(s) 299, 794, 1425, 1494
MaeII ACGT 1 cut(s) 1234
MaeIII GTNAC 5 cut(s) 20, 287, 398, 892, 1400
MalI GATC 9 cut(s) 12, 66, 144, 303, 396, 984, 1136, 1499, 1511
MboI GATC 9 cut(s) 10, 64, 142, 301, 394, 982, 1134, 1497, 1509
MboII GAAGA 4 cut(s) 235, 884, 1092, 1412
MflI RGATCY 3 cut(s) 142, 301, 1134
MhlI GDGCHC 1 cut(s) 660
MlsI TGGCCA 1 cut(s) 167
MluNI TGGCCA 1 cut(s) 167
MlyI GAGTC 2 cut(s) 1003, 1483
MmeI TCCRAC 1 cut(s) 489
MnlI CCTC 9 cut(s) 49, 400, 413, 637, 724, 870, 1254, 1403, 1456
Mox20I TGGCCA 1 cut(s) 167
MroXI GAANNNNTTC 1 cut(s) 693
MscI TGGCCA 1 cut(s) 167
MseI TTAA 6 cut(s) 279, 306, 422, 1139, 1316, 1552
MslI CAYNNNNRTG 3 cut(s) 516, 528, 1336
Msp20I TGGCCA 1 cut(s) 167
MspA1I CMGCKG 1 cut(s) 47
MspCI CTTAAG 1 cut(s) 1138
MspI CCGG 1 cut(s) 1269
MspR9I CCNGG 3 cut(s) 653, 1206, 1270
Mva1269I GAATGC 1 cut(s) 1270
MvaI CCWGG 2 cut(s) 653, 1206
MvnI CGCG 3 cut(s) 348, 382, 384
MwoI GCNNNNNNNGC 4 cut(s) 53, 360, 1380, 1531
NciI CCSGG 1 cut(s) 1270
NdeII GATC 9 cut(s) 10, 64, 142, 301, 394, 982, 1134, 1497, 1509
NlaIV GGNNCC 1 cut(s) 1539
NmuCI GTSAC 1 cut(s) 287
NspI RCATGY 4 cut(s) 358, 488, 906, 1088
NspV TTCGAA 1 cut(s) 1152
PaeR7I CTCGAG 1 cut(s) 843
PagI TCATGA 1 cut(s) 1105
PciI ACATGT 1 cut(s) 484
PcsI WCGNNNNNNNCGW 1 cut(s) 885
PctI GAATGC 1 cut(s) 1270
PdmI GAANNNNTTC 1 cut(s) 693
PfeI GAWTC 5 cut(s) 71, 557, 694, 992, 1181
PflMI CCANNNNNTGG 2 cut(s) 174, 652
PkrI GCNGC 3 cut(s) 49, 535, 1447
PleI GAGTC 2 cut(s) 1003, 1482
PpsI GAGTC 2 cut(s) 1003, 1482
Ppu21I YACGTR 1 cut(s) 1235
PscI ACATGT 1 cut(s) 484
Psp6I CCWGG 2 cut(s) 651, 1204
PspGI CCWGG 2 cut(s) 651, 1204
PspN4I GGNNCC 1 cut(s) 1539
PspXI VCTCGAGB 1 cut(s) 843
PstI CTGCAG 1 cut(s) 1522
PstNI CAGNNNCTG 1 cut(s) 1526
PsuI RGATCY 3 cut(s) 142, 301, 1134
RsaI GTAC 2 cut(s) 770, 1066
RsaNI GTAC 2 cut(s) 769, 1065
RseI CAYNNNNRTG 3 cut(s) 516, 528, 1336
SaqAI TTAA 6 cut(s) 279, 306, 422, 1139, 1316, 1552
SatI GCNGC 3 cut(s) 48, 534, 1446
Sau3AI GATC 9 cut(s) 10, 64, 142, 301, 394, 982, 1134, 1497, 1509
SchI GAGTC 2 cut(s) 1003, 1483
ScrFI CCNGG 3 cut(s) 653, 1206, 1270
SduI GDGCHC 1 cut(s) 660
SexAI ACCWGGT 1 cut(s) 1204
SfaNI GCATC 2 cut(s) 187, 977
SfcI CTRYAG 2 cut(s) 1457, 1518
Sfr274I CTCGAG 1 cut(s) 843
SfuI TTCGAA 1 cut(s) 1152
SlaI CTCGAG 1 cut(s) 843
SmiMI CAYNNNNRTG 3 cut(s) 516, 528, 1336
SmlI CTYRAG 2 cut(s) 843, 1138
SmoI CTYRAG 2 cut(s) 843, 1138
SsiI CCGC 6 cut(s) 45, 62, 205, 247, 346, 1322
SspI AATATT 1 cut(s) 118
SspMI CTAG 4 cut(s) 299, 794, 1425, 1494
StyD4I CCNGG 3 cut(s) 651, 1204, 1268
StyI CCWWGG 2 cut(s) 537, 1299
TaaI ACNGT 2 cut(s) 410, 1295
TaiI ACGT 1 cut(s) 1237
TaqI TCGA 7 cut(s) 405, 617, 697, 714, 844, 985, 1152
TatI WGTACW 1 cut(s) 768
TfiI GAWTC 5 cut(s) 71, 557, 694, 992, 1181
Tru1I TTAA 6 cut(s) 279, 306, 422, 1139, 1316, 1552
Tru9I TTAA 6 cut(s) 279, 306, 422, 1139, 1316, 1552
TscAI CASTG 3 cut(s) 36, 1077, 1293
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 3 cut(s) 47, 533, 1445
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 7 cut(s) 384, 528, 1122, 1194, 1359, 1381, 1448
TspGWI ACGGA 1 cut(s) 1044
TspRI CASTG 3 cut(s) 36, 1077, 1293
Van91I CCANNNNNTGG 2 cut(s) 174, 652
Vha464I CTTAAG 1 cut(s) 1138
VneI GTGCAC 1 cut(s) 656
XapI RAATTY 3 cut(s) 85, 1109, 1169
XbaI TCTAGA 1 cut(s) 298
XceI RCATGY 4 cut(s) 358, 488, 906, 1088
XhoI CTCGAG 1 cut(s) 843
XmiI GTMKAC 1 cut(s) 1274
XmnI GAANNNNTTC 1 cut(s) 693
XspI CTAG 4 cut(s) 299, 794, 1425, 1494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.