Rmu_sc0002077.1_g000013

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002077.1
OG0000947
Physical Location & Seq
Reverse (-)
40310 .. 40744
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002077.1_g000013.1.cds

Sequence Viewer

Length: 435 bp
atgccatggaagataattaacctgcaaagcactcttatttgcggaggtcaattttatgacaaagaatcgtatagatccaaaaagtctcattggcagtattttgatcgacaatggtatgagccgggtgccactgctgaatccactgatcgtgatgagtacctaaatggctgcaatggtttagttttgttaatgaaatcagaaacttatcagttttatgtttgcaatcccatcacaagacaacaagttaccatacctaaagcctgtgtccaccaaaaccatgatgatcagcatttttgggctgctttgtcttttgacccttccgaatctgctcatcacttgagagttgttagaattgattattctgcaccctactcagttgtgctggatatattctcgtctgaatatggactgtgggttcgacattggctgtgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

144

Amino Acids

17.0

Weight (kDa)

6.13

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 30
AccB1I GGYRCC 1 cut(s) 125
AciI CCGC 1 cut(s) 42
AclWI GGATC 1 cut(s) 69
AfaI GTAC 1 cut(s) 158
AloI GAACNNNNNNTCC 2 cut(s) 399, 431
Alw26I GTCTC 1 cut(s) 90
AlwI GGATC 1 cut(s) 69
ApeKI GCWGC 2 cut(s) 168, 299
ArsI GACNNNNNNTTYG 2 cut(s) 399, 431
AsuC2I CCSGG 1 cut(s) 123
BanI GGYRCC 1 cut(s) 125
BbvI GCAGC 2 cut(s) 155, 286
BccI CCATC 1 cut(s) 236
BclI TGATCA 1 cut(s) 283
BcnI CCSGG 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 90
BfuAI ACCTGC 1 cut(s) 30
BisI GCNGC 2 cut(s) 169, 300
BlsI GCNGC 2 cut(s) 170, 301
Bme1390I CCNGG 1 cut(s) 123
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 358
BpuMI CCSGG 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 5
Bse3DI GCAATG 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 5
BseMI GCAATG 1 cut(s) 178
BseMII CTCAG 1 cut(s) 387
BseXI GCAGC 2 cut(s) 155, 286
BsgI GTGCAG 1 cut(s) 348
BshNI GGYRCC 1 cut(s) 125
BsiSI CCGG 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 90
Bsp143I GATC 4 cut(s) 74, 103, 145, 283
Bsp19I CCATGG 1 cut(s) 5
BspACI CCGC 1 cut(s) 42
BspCNI CTCAG 1 cut(s) 386
BspLI GGNNCC 1 cut(s) 127
BspMI ACCTGC 1 cut(s) 30
BspPI GGATC 1 cut(s) 69
BspT107I GGYRCC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 4 cut(s) 74, 103, 145, 283
BssT1I CCWWGG 1 cut(s) 5
Bst4CI ACNGT 1 cut(s) 411
BstDEI CTNAG 1 cut(s) 373
BstDSI CCRYGG 1 cut(s) 5
BstKTI GATC 4 cut(s) 77, 106, 148, 286
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 4 cut(s) 74, 103, 145, 283
BstSCI CCNGG 1 cut(s) 121
BstV1I GCAGC 2 cut(s) 155, 286
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BtgI CCRYGG 1 cut(s) 5
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 2 cut(s) 129, 141
BveI ACCTGC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 157
CviAII CATG 2 cut(s) 6, 278
CviJI RGCY 5 cut(s) 121, 168, 260, 299, 427
CviKI_1 RGCY 5 cut(s) 121, 168, 260, 299, 427
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 1 cut(s) 373
DpnI GATC 4 cut(s) 76, 105, 147, 285
DpnII GATC 4 cut(s) 74, 103, 145, 283
Eco130I CCWWGG 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 5
ErhI CCWWGG 1 cut(s) 5
FaeI CATG 2 cut(s) 9, 281
FaiI YATR 9 cut(s) 7, 57, 72, 117, 216, 251, 279, 389, 405
FatI CATG 2 cut(s) 5, 277
FbaI TGATCA 1 cut(s) 283
Fnu4HI GCNGC 2 cut(s) 169, 300
Fsp4HI GCNGC 2 cut(s) 169, 300
GluI GCNGC 2 cut(s) 169, 300
HapII CCGG 1 cut(s) 122
Hin1II CATG 2 cut(s) 9, 281
HinfI GANTC 3 cut(s) 65, 137, 323
HpaII CCGG 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 3 cut(s) 199, 322, 400
Hpy188III TCNNGA 1 cut(s) 149
Hpy8I GTNNAC 1 cut(s) 268
HpyAV CCTTC 1 cut(s) 327
HpyCH4III ACNGT 1 cut(s) 411
HpyCH4V TGCA 4 cut(s) 25, 171, 222, 365
HpyF3I CTNAG 1 cut(s) 373
Hsp92II CATG 2 cut(s) 9, 281
Ksp22I TGATCA 1 cut(s) 283
Kzo9I GATC 4 cut(s) 74, 103, 145, 283
LpnPI CCDG 4 cut(s) 35, 135, 274, 368
Lsp1109I GCAGC 2 cut(s) 155, 286
MaeIII GTNAC 1 cut(s) 244
MalI GATC 4 cut(s) 76, 105, 147, 285
MboI GATC 4 cut(s) 74, 103, 145, 283
MboII GAAGA 1 cut(s) 22
MflI RGATCY 1 cut(s) 74
MluCI AATT 3 cut(s) 15, 50, 351
MnlI CCTC 1 cut(s) 38
MseI TTAA 2 cut(s) 18, 188
MspI CCGG 1 cut(s) 122
MspR9I CCNGG 1 cut(s) 123
NciI CCSGG 1 cut(s) 123
NcoI CCATGG 1 cut(s) 5
NdeII GATC 4 cut(s) 74, 103, 145, 283
NlaIII CATG 2 cut(s) 9, 281
NlaIV GGNNCC 1 cut(s) 127
PfeI GAWTC 3 cut(s) 65, 137, 323
PkrI GCNGC 2 cut(s) 170, 301
PspN4I GGNNCC 1 cut(s) 127
PsuI RGATCY 1 cut(s) 74
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SaqAI TTAA 2 cut(s) 18, 188
SatI GCNGC 2 cut(s) 169, 300
Sau3AI GATC 4 cut(s) 74, 103, 145, 283
ScrFI CCNGG 1 cut(s) 123
SetI ASST 4 cut(s) 24, 49, 162, 256
SmlI CTYRAG 1 cut(s) 337
SmoI CTYRAG 1 cut(s) 337
Sse9I AATT 3 cut(s) 15, 50, 351
SsiI CCGC 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 121
StyI CCWWGG 1 cut(s) 5
TaaI ACNGT 1 cut(s) 411
TaqI TCGA 2 cut(s) 106, 418
TasI AATT 3 cut(s) 15, 50, 351
TfiI GAWTC 3 cut(s) 65, 137, 323
Tru1I TTAA 2 cut(s) 18, 188
Tru9I TTAA 2 cut(s) 18, 188
TscAI CASTG 2 cut(s) 136, 148
TseI GCWGC 2 cut(s) 168, 299
TspDTI ATGAA 1 cut(s) 206
TspRI CASTG 2 cut(s) 136, 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.