Rorug02G0109100

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000947
Physical Location & Seq
Reverse (-)
9398844 .. 9401309
2466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0109100.1

Sequence Viewer

Length: 1131 bp
ATGGAGGGTAACTTATGTGATGTCAACCATTTGGATGCTGATGTCCTTTTACCTCCGAGAAAGCGTCTGCTTGCTGGGTTGAAGAAACAGAGTCCGGAGGGTGATAGTAGTTCATGGCTGTCTCTAGTGTCAGCAACAGCTTCGGCTTCGGCTTCTGCTTCTTCTTCTTCATCGCCTTCTTCAAGTGAACTCAACACACGTTTAAACAGAATATTGACTTCTCATGATCCTAATCTTTCACCCGAGGAGTTGGTAGAGGTCTCAAAATCGGCTGCTACTGCTGCAGTTAAGGCTGCAGAAGATGCGAGAGCTGCAGCTGAAGAGAAAGCTGCAATAGCTGCAAAGGCAGTGGCCGCAGCCAAGAGTGCTTTAGATTTGGTTGCCTCTTTCTCGGACGAAATAGCCAGCAAGGAGAAACACCTGAAAAAGAACAAGCTCAAGAAACATGTCCCAGTTCAGCTCTTGTACAAAAAATATCAGCCAATTGAGAATTTTAAGAAAGATGAAGAGTTGGCCCGGAAGTTGCATAGAGCTATTAATAGCTCACCACGAATCTCAAAGAATCCATCAGGTTCTGACTCTAAGGGTCACAAACACAAGAAGCCTAAAATCTCACAGAGTTCTGAGGTAGCTAGGGTTTCCAATGGAAGTACAGTATTGGATCAAGACCCTGCATCTGCTTGCAATGGTCATGCTGCGGCAGGTAAGCTCGATTTTGAAGACACCATCCTTGACATGTACAAAAATAAAGCAGCTGAAAAAGCATATAGAAATGATAAATCTGGTCGATCGGAGATGGATAATGGGGAAGCAGAATCAAGTCAAACAAAAGAGAAAAATTGGGACGATATGCCTACTAGTGGTAAAAAAAGGGGCCGAGTGAAGCTAAAAAAGTTGCCTTTAAGTGTTTGCACTTTTAGGGATCAGACAAATCCTAAAGAAGATGTGGGTGCAAGAAGCTCCCCACTAACTGATATGAACATGGGAAATCCGACTGCTGGAAACAAGCCTTTGTTTCCTGCGGAGTCTTCTGCTGATAGTATGCTGCCTATTGAGCCCACACCGGTGTGGAAATGCCAGGAGTTCAAGGCACCTGCATGTGTGAAGCAAAATAAAGTCATGCAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

376

Amino Acids

40.55

Weight (kDa)

9.22

Isoelectric Point (pI)

53.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1102
Acc36I ACCTGC 2 cut(s) 692, 1102
AccB1I GGYRCC 1 cut(s) 1090
AccIII TCCGGA 1 cut(s) 94
AciI CCGC 3 cut(s) 354, 698, 1022
AclWI GGATC 3 cut(s) 221, 669, 930
AcoI YGGCCR 1 cut(s) 351
AcsI RAATTY 1 cut(s) 490
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 3 cut(s) 467, 652, 740
AfiI CCNNNNNNNGG 2 cut(s) 860, 998
AflIII ACRYGT 3 cut(s) 197, 445, 735
AgeI ACCGGT 1 cut(s) 1063
AgsI TTSAA 4 cut(s) 82, 183, 719, 1087
AhlI ACTAGT 1 cut(s) 857
AjnI CCWGG 1 cut(s) 1077
AleI CACNNNNGTG 2 cut(s) 1064, 1066
Alw26I GTCTC 2 cut(s) 126, 265
AlwI GGATC 3 cut(s) 221, 669, 930
AlwNI CAGNNNCTG 1 cut(s) 575
Ama87I CYCGRG 1 cut(s) 242
Aor13HI TCCGGA 1 cut(s) 94
AoxI GGCC 3 cut(s) 351, 513, 874
ApoI RAATTY 1 cut(s) 490
AseI ATTAAT 1 cut(s) 537
AsiGI ACCGGT 1 cut(s) 1063
AspS9I GGNCC 2 cut(s) 514, 874
AsuC2I CCSGG 1 cut(s) 517
AsuHPI GGTGA 3 cut(s) 113, 231, 537
AvaI CYCGRG 1 cut(s) 242
BanI GGYRCC 1 cut(s) 1090
BanII GRGCYC 1 cut(s) 1059
BbsI GAAGAC 2 cut(s) 726, 1020
BccI CCATC 3 cut(s) 574, 734, 790
BcgI CGANNNNNNTGC 2 cut(s) 123, 157
BciT130I CCWGG 1 cut(s) 1079
BcnI CCSGG 1 cut(s) 517
BcoDI GTCTC 2 cut(s) 126, 265
BcuI ACTAGT 1 cut(s) 857
BfaI CTAG 3 cut(s) 125, 633, 858
BfmI CTRYAG 3 cut(s) 282, 294, 312
BfuAI ACCTGC 2 cut(s) 692, 1102
Bme1390I CCNGG 2 cut(s) 517, 1079
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 2 cut(s) 514, 874
BmiI GGNNCC 2 cut(s) 875, 1092
BmrFI CCNGG 2 cut(s) 517, 1079
BmrI ACTGGG 1 cut(s) 446
BmsI GCATC 3 cut(s) 25, 292, 683
BmuI ACTGGG 1 cut(s) 446
BpiI GAAGAC 2 cut(s) 726, 1020
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 1 cut(s) 517
BsaBI GATNNNNATC 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 265
BsaJI CCNNGG 1 cut(s) 243
BsaWI WCCGGW 2 cut(s) 94, 1063
Bsc4I CCNNNNNNNGG 2 cut(s) 860, 998
Bse118I RCCGGY 1 cut(s) 1063
Bse1I ACTGG 1 cut(s) 452
Bse3DI GCAATG 1 cut(s) 691
Bse8I GATNNNNATC 1 cut(s) 231
BseAI TCCGGA 1 cut(s) 94
BseBI CCWGG 1 cut(s) 1079
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 2 cut(s) 40, 726
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 2 cut(s) 860, 998
BseMI GCAATG 1 cut(s) 691
BseMII CTCAG 1 cut(s) 615
BseNI ACTGG 1 cut(s) 452
BseRI GAGGAG 1 cut(s) 260
BseYI CCCAGC 1 cut(s) 74
Bsh1285I CGRYCG 1 cut(s) 791
BshFI GGCC 3 cut(s) 353, 515, 876
BshNI GGYRCC 1 cut(s) 1090
BshTI ACCGGT 1 cut(s) 1063
BsiEI CGRYCG 1 cut(s) 791
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 3 cut(s) 95, 517, 1064
BslFI GGGAC 2 cut(s) 434, 857
BslI CCNNNNNNNGG 2 cut(s) 860, 998
BsmAI GTCTC 2 cut(s) 126, 265
BsmFI GGGAC 2 cut(s) 434, 857
BsnI GGCC 3 cut(s) 353, 515, 876
Bso31I GGTCTC 1 cut(s) 265
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 1059
Bsp13I TCCGGA 1 cut(s) 94
Bsp1407I TGTACA 2 cut(s) 465, 738
Bsp143I GATC 4 cut(s) 226, 661, 788, 922
BspACI CCGC 3 cut(s) 354, 698, 1022
BspANI GGCC 3 cut(s) 353, 515, 876
BspCNI CTCAG 1 cut(s) 616
BspEI TCCGGA 1 cut(s) 94
BspHI TCATGA 2 cut(s) 223, 1127
BspLI GGNNCC 2 cut(s) 875, 1092
BspMAI CTGCAG 3 cut(s) 286, 298, 316
BspMI ACCTGC 2 cut(s) 692, 1102
BspPI GGATC 3 cut(s) 221, 669, 930
BspT107I GGYRCC 1 cut(s) 1090
BspTNI GGTCTC 1 cut(s) 265
BsrDI GCAATG 1 cut(s) 691
BsrFI RCCGGY 1 cut(s) 1063
BsrGI TGTACA 2 cut(s) 465, 738
BsrI ACTGG 1 cut(s) 452
BssAI RCCGGY 1 cut(s) 1063
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 4 cut(s) 226, 661, 788, 922
Bst2UI CCWGG 1 cut(s) 1079
Bst4CI ACNGT 1 cut(s) 655
Bst6I CTCTTC 2 cut(s) 315, 501
BstAPI GCANNNNNTGC 2 cut(s) 302, 338
BstAUI TGTACA 2 cut(s) 465, 738
BstC8I GCNNGC 3 cut(s) 72, 406, 682
BstDEI CTNAG 2 cut(s) 582, 624
BstF5I GGATG 2 cut(s) 40, 726
BstKTI GATC 4 cut(s) 229, 664, 791, 925
BstMAI GTCTC 2 cut(s) 126, 265
BstMBI GATC 4 cut(s) 226, 661, 788, 922
BstMCI CGRYCG 1 cut(s) 791
BstNI CCWGG 1 cut(s) 1079
BstNSI RCATGY 3 cut(s) 449, 739, 1101
BstSCI CCNGG 2 cut(s) 515, 1077
BstSFI CTRYAG 3 cut(s) 282, 294, 312
BstV2I GAAGAC 2 cut(s) 726, 1020
BsuRI GGCC 3 cut(s) 353, 515, 876
BtgZI GCGATG 1 cut(s) 156
BtsCI GGATG 2 cut(s) 40, 726
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 354
BveI ACCTGC 2 cut(s) 692, 1102
Cac8I GCNNGC 3 cut(s) 72, 406, 682
CaiI CAGNNNCTG 1 cut(s) 575
CciI TCATGA 2 cut(s) 223, 1127
Cfr10I RCCGGY 1 cut(s) 1063
Cfr13I GGNCC 2 cut(s) 514, 874
CseI GACGC 1 cut(s) 53
Csp6I GTAC 3 cut(s) 466, 651, 739
CspAI ACCGGT 1 cut(s) 1063
CspCI CAANNNNNGTGG 2 cut(s) 330, 365
CviAII CATG 9 cut(s) 114, 224, 446, 692, 736, 982, 1098, 1120, 1128
CviQI GTAC 3 cut(s) 466, 651, 739
DdeI CTNAG 2 cut(s) 582, 624
DpnI GATC 4 cut(s) 228, 663, 790, 924
DpnII GATC 4 cut(s) 226, 661, 788, 922
DraI TTTAAA 1 cut(s) 204
EaeI YGGCCR 1 cut(s) 351
Eam1104I CTCTTC 2 cut(s) 315, 501
EarI CTCTTC 2 cut(s) 315, 501
Eco24I GRGCYC 1 cut(s) 1059
Eco31I GGTCTC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 339
Eco88I CYCGRG 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 1077
EcoT38I GRGCYC 1 cut(s) 1059
FaeI CATG 9 cut(s) 117, 227, 449, 695, 739, 985, 1101, 1123, 1131
FaqI GGGAC 2 cut(s) 434, 857
FatI CATG 9 cut(s) 113, 223, 445, 691, 735, 981, 1097, 1119, 1127
FokI GGATG 2 cut(s) 47, 713
FriOI GRGCYC 1 cut(s) 1059
FspBI CTAG 3 cut(s) 125, 633, 858
GsaI CCCAGC 1 cut(s) 78
HaeIII GGCC 3 cut(s) 353, 515, 876
HapII CCGG 3 cut(s) 95, 517, 1064
HgaI GACGC 1 cut(s) 53
Hin1II CATG 9 cut(s) 117, 227, 449, 695, 739, 985, 1101, 1123, 1131
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 6 cut(s) 91, 552, 562, 578, 815, 1025
HpaII CCGG 3 cut(s) 95, 517, 1064
HphI GGTGA 3 cut(s) 113, 231, 537
Hpy166II GTNNAC 2 cut(s) 25, 188
Hpy188I TCNGA 7 cut(s) 57, 394, 577, 625, 793, 927, 993
Hpy188III TCNNGA 5 cut(s) 95, 224, 439, 665, 1128
Hpy8I GTNNAC 2 cut(s) 25, 188
HpyAV CCTTC 1 cut(s) 186
HpyCH4III ACNGT 1 cut(s) 655
HpyCH4IV ACGT 1 cut(s) 199
HpyF3I CTNAG 2 cut(s) 582, 624
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 9 cut(s) 117, 227, 449, 695, 739, 985, 1101, 1123, 1131
Kpn2I TCCGGA 1 cut(s) 94
Kzo9I GATC 4 cut(s) 226, 661, 788, 922
LmnI GCTCC 1 cut(s) 965
LweI GCATC 3 cut(s) 25, 292, 683
MaeI CTAG 3 cut(s) 125, 633, 858
MaeII ACGT 1 cut(s) 199
MaeIII GTNAC 2 cut(s) 8, 587
MalI GATC 4 cut(s) 228, 663, 790, 924
MboI GATC 4 cut(s) 226, 661, 788, 922
MfeI CAATTG 1 cut(s) 483
MhlI GDGCHC 1 cut(s) 1059
MluCI AATT 3 cut(s) 483, 490, 838
MlyI GAGTC 3 cut(s) 100, 572, 1034
MmeI TCCRAC 1 cut(s) 1016
MnlI CCTC 6 cut(s) 63, 91, 238, 250, 394, 619
MroI TCCGGA 1 cut(s) 94
MseI TTAA 5 cut(s) 203, 288, 495, 537, 902
MslI CAYNNNNRTG 4 cut(s) 33, 1064, 1066, 1096
MspA1I CMGCKG 2 cut(s) 317, 755
MspI CCGG 3 cut(s) 95, 517, 1064
MspR9I CCNGG 2 cut(s) 517, 1079
MssI GTTTAAAC 1 cut(s) 204
MunI CAATTG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 1079
NciI CCSGG 1 cut(s) 517
NdeII GATC 4 cut(s) 226, 661, 788, 922
NlaIII CATG 9 cut(s) 117, 227, 449, 695, 739, 985, 1101, 1123, 1131
NlaIV GGNNCC 2 cut(s) 875, 1092
NmeAIII GCCGAG 1 cut(s) 902
NmuCI GTSAC 1 cut(s) 587
NspI RCATGY 3 cut(s) 449, 739, 1101
OliI CACNNNNGTG 2 cut(s) 1064, 1066
PagI TCATGA 2 cut(s) 223, 1127
PaqCI CACCTGC 1 cut(s) 1102
PciI ACATGT 2 cut(s) 445, 735
PfeI GAWTC 3 cut(s) 552, 562, 815
PinAI ACCGGT 1 cut(s) 1063
Ple19I CGATCG 1 cut(s) 791
PleI GAGTC 3 cut(s) 99, 572, 1033
PmeI GTTTAAAC 1 cut(s) 204
PpsI GAGTC 3 cut(s) 99, 572, 1033
PscI ACATGT 2 cut(s) 445, 735
PshBI ATTAAT 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 1077
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 1 cut(s) 1077
PspN4I GGNNCC 2 cut(s) 875, 1092
PspPI GGNCC 2 cut(s) 514, 874
PstI CTGCAG 3 cut(s) 286, 298, 316
PstNI CAGNNNCTG 1 cut(s) 575
PvuI CGATCG 1 cut(s) 791
PvuII CAGCTG 2 cut(s) 317, 755
RsaI GTAC 3 cut(s) 467, 652, 740
RsaNI GTAC 3 cut(s) 466, 651, 739
RseI CAYNNNNRTG 4 cut(s) 33, 1064, 1066, 1096
SaqAI TTAA 5 cut(s) 203, 288, 495, 537, 902
Sau3AI GATC 4 cut(s) 226, 661, 788, 922
Sau96I GGNCC 2 cut(s) 514, 874
SchI GAGTC 3 cut(s) 100, 572, 1034
ScrFI CCNGG 2 cut(s) 517, 1079
SduI GDGCHC 1 cut(s) 1059
SfaNI GCATC 3 cut(s) 25, 292, 683
SfcI CTRYAG 3 cut(s) 282, 294, 312
SgrAI CRCCGGYG 1 cut(s) 1063
SmiMI CAYNNNNRTG 4 cut(s) 33, 1064, 1066, 1096
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
SpeI ACTAGT 1 cut(s) 857
Sse9I AATT 3 cut(s) 483, 490, 838
SsiI CCGC 3 cut(s) 354, 698, 1022
SspI AATATT 1 cut(s) 213
SspMI CTAG 3 cut(s) 125, 633, 858
StyD4I CCNGG 2 cut(s) 515, 1077
TaaI ACNGT 1 cut(s) 655
TaiI ACGT 1 cut(s) 202
TaqI TCGA 2 cut(s) 711, 787
TasI AATT 3 cut(s) 483, 490, 838
TatI WGTACW 3 cut(s) 465, 650, 738
TauI GCSGC 2 cut(s) 356, 701
TfiI GAWTC 3 cut(s) 552, 562, 815
Tru1I TTAA 5 cut(s) 203, 288, 495, 537, 902
Tru9I TTAA 5 cut(s) 203, 288, 495, 537, 902
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 1 cut(s) 587
Tsp45I GTSAC 1 cut(s) 587
TspDTI ATGAA 4 cut(s) 102, 159, 519, 992
TspRI CASTG 1 cut(s) 354
VspI ATTAAT 1 cut(s) 537
XapI RAATTY 1 cut(s) 490
XceI RCATGY 3 cut(s) 449, 739, 1101
XspI CTAG 3 cut(s) 125, 633, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.