Rmu_sc0003804.1_g000016

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003804.1
OG0000947
Physical Location & Seq
Reverse (-)
47668 .. 49035
1368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003804.1_g000016.1.cds

Sequence Viewer

Length: 1368 bp
atgagtgtgtccaagttatggcacagaatagcatcagatctttgggtgaggagattttgggcgcagtcgcctcctttgggtgtttacttccgcaccatccggaatccttcgagtcctttcatgctttccatggtggacaaggtgccgtcttatttgcctagcattaattatatctctctatataattatcataacatggatgataacctcaaaagcaccagcggttatcatctctgtacgttatttaatggcctaattgacctgtttgagtgctataagcgaggttggcaattttatcgacattataaacacggtcacgatgatcatgatgatcagtatctacacggctgcaatggattacttctgttattgaaatcgggaacttatcagttttatgtgtgcaatcccattaccacacaacaagtccccgtacctaaagcttgtgtccaccaaaaccatgagcatttttgtgctgccttggcttttgacccttctgaatctccttatcactacagagttgtgaggattgattactctgaatccgtttcatctacctcaaactctgtcatgtttgacatattttcatctatatacggacagtgggttcgacataggttgcaacttgacccaggttttactgaggggtttgaaaaggtaaagctgtgcaggcaatttttttacttgcggggcaagttatatagcttagccatgtcatggaagattttatgcattgacctcaaaactgttgaagcttcagcccttgaacttcctgtcccggaggccaataagaacggagcgatgggatgtcttggggtgtcgatggacgttctctgctatataaagcgtatgccttccagaaagtttcacgatctggtagtttggtactatgatgatcgttgtgaatctagtgaatggactcgcagatataatgttagttgcggcttgttgggttatggaataaagtatcaagggtatgattatgatgatactgtggaaccctatgcaataagtcctagttctgatgtcttgttctttggcactcccgacttgattagttgctaccatctcaaaagcgagaagtacaagcccgtgtgtcatctatctccctctaaaattgtacctgattacttctgggtattgcgtgcttgctttgtacctttctaccagttgggaaacaaagcagtggttcctgaggggaagggcatagaaatcttgactgcagaagcacaatgtgaagaagagaaagatgttgacaaagttgaagtgataaacgtcaaactatgtgatcgtcataaaaagccgttgccaccgttgatttatcctagcgaaattactgaaatgtatttggaatttgagtgtcccaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

455

Amino Acids

52.8

Weight (kDa)

6.49

Isoelectric Point (pI)

56.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 306
AccB1I GGYRCC 1 cut(s) 142
AccB7I CCANNNNNTGG 2 cut(s) 18, 714
AccIII TCCGGA 1 cut(s) 99
AciI CCGC 4 cut(s) 91, 222, 685, 939
AcsI RAATTY 1 cut(s) 1349
AcuI CTGAAG 1 cut(s) 738
AdeI CACNNNGTG 1 cut(s) 1232
AfaI GTAC 6 cut(s) 238, 432, 884, 1082, 1119, 1155
AfiI CCNNNNNNNGG 3 cut(s) 18, 77, 714
AgsI TTSAA 5 cut(s) 373, 650, 749, 764, 1262
AjnI CCWGG 1 cut(s) 628
AloI GAACNNNNNNTCC 4 cut(s) 588, 620, 756, 788
AluBI AGCT 4 cut(s) 440, 661, 702, 752
AluI AGCT 4 cut(s) 440, 661, 702, 752
Aor13HI TCCGGA 1 cut(s) 99
AoxI GGCC 2 cut(s) 250, 780
ApeKI GCWGC 2 cut(s) 348, 473
ApoI RAATTY 1 cut(s) 1349
ArsI GACNNNNNNTTYG 2 cut(s) 588, 620
AseI ATTAAT 1 cut(s) 165
AspLEI GCGC 1 cut(s) 64
AsuC2I CCSGG 1 cut(s) 776
AsuHPI GGTGA 1 cut(s) 58
AxyI CCTNAGG 1 cut(s) 1191
BanI GGYRCC 1 cut(s) 142
BbvI GCAGC 2 cut(s) 335, 460
BccI CCATC 4 cut(s) 104, 793, 814, 1071
BceAI ACGGC 3 cut(s) 130, 361, 1285
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BciT130I CCWGG 1 cut(s) 630
BclI TGATCA 2 cut(s) 322, 331
BcnI CCSGG 1 cut(s) 776
BfaI CTAG 4 cut(s) 159, 906, 1014, 1323
BfmI CTRYAG 2 cut(s) 511, 1218
BglII AGATCT 1 cut(s) 37
BisI GCNGC 3 cut(s) 349, 474, 940
BlpI GCTNAGC 1 cut(s) 703
BlsI GCNGC 3 cut(s) 350, 475, 941
Bme1390I CCNGG 2 cut(s) 630, 776
BmiI GGNNCC 3 cut(s) 144, 996, 1188
BmrFI CCNGG 2 cut(s) 630, 776
BmsI GCATC 1 cut(s) 41
Bpu1102I GCTNAGC 1 cut(s) 703
BpuMI CCSGG 1 cut(s) 776
BsaBI GATNNNNATC 1 cut(s) 336
BsaJI CCNNGG 3 cut(s) 129, 477, 628
BsaWI WCCGGW 1 cut(s) 99
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 77, 714
Bse1I ACTGG 1 cut(s) 1165
Bse21I CCTNAGG 1 cut(s) 1191
Bse3DI GCAATG 1 cut(s) 358
Bse8I GATNNNNATC 1 cut(s) 336
BseAI TCCGGA 1 cut(s) 99
BseBI CCWGG 1 cut(s) 630
BseDI CCNNGG 3 cut(s) 129, 477, 628
BseGI GGATG 3 cut(s) 96, 205, 809
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 3 cut(s) 18, 77, 714
BseMI GCAATG 1 cut(s) 358
BseMII CTCAG 2 cut(s) 630, 1182
BseNI ACTGG 1 cut(s) 1165
BseRI GAGGAG 1 cut(s) 64
BseXI GCAGC 2 cut(s) 335, 460
BsgI GTGCAG 1 cut(s) 685
BshFI GGCC 2 cut(s) 252, 782
BshNI GGYRCC 1 cut(s) 142
BsiSI CCGG 2 cut(s) 100, 776
BslFI GGGAC 3 cut(s) 410, 758, 1344
BslI CCNNNNNNNGG 3 cut(s) 18, 77, 714
BsmFI GGGAC 3 cut(s) 410, 758, 1344
BsnI GGCC 2 cut(s) 252, 782
Bsp13I TCCGGA 1 cut(s) 99
Bsp143I GATC 6 cut(s) 37, 322, 331, 868, 892, 1285
Bsp1720I GCTNAGC 1 cut(s) 703
Bsp19I CCATGG 1 cut(s) 129
BspACI CCGC 4 cut(s) 91, 222, 685, 939
BspANI GGCC 2 cut(s) 252, 782
BspCNI CTCAG 2 cut(s) 631, 1183
BspEI TCCGGA 1 cut(s) 99
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 3 cut(s) 144, 996, 1188
BspMAI CTGCAG 1 cut(s) 1222
BspT107I GGYRCC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 358
BsrI ACTGG 1 cut(s) 1165
BssECI CCNNGG 3 cut(s) 129, 477, 628
BssMI GATC 6 cut(s) 37, 322, 331, 868, 892, 1285
BssT1I CCWWGG 2 cut(s) 129, 477
Bst2UI CCWGG 1 cut(s) 630
Bst4CI ACNGT 5 cut(s) 314, 600, 745, 991, 1311
Bst6I CTCTTC 1 cut(s) 1233
BstC8I GCNNGC 3 cut(s) 668, 1143, 1147
BstDEI CTNAG 3 cut(s) 639, 703, 1191
BstDSI CCRYGG 1 cut(s) 129
BstF5I GGATG 3 cut(s) 96, 205, 809
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 6 cut(s) 40, 325, 334, 871, 895, 1288
BstMBI GATC 6 cut(s) 37, 322, 331, 868, 892, 1285
BstMWI GCNNNNNNNGC 3 cut(s) 286, 479, 667
BstNI CCWGG 1 cut(s) 630
BstSCI CCNGG 2 cut(s) 628, 774
BstSFI CTRYAG 2 cut(s) 511, 1218
BstV1I GCAGC 2 cut(s) 335, 460
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
Bsu36I CCTNAGG 1 cut(s) 1191
BsuRI GGCC 2 cut(s) 252, 782
BtgI CCRYGG 1 cut(s) 129
BtgZI GCGATG 1 cut(s) 812
BtsCI GGATG 3 cut(s) 96, 205, 809
BtsI GCAGTG 1 cut(s) 1188
BtsIMutI CAGTG 2 cut(s) 605, 1188
Cac8I GCNNGC 3 cut(s) 668, 1143, 1147
CciI TCATGA 1 cut(s) 325
CfoI GCGC 1 cut(s) 64
Csp6I GTAC 6 cut(s) 237, 431, 883, 1081, 1118, 1154
CviAII CATG 8 cut(s) 121, 130, 196, 326, 458, 568, 709, 714
CviQI GTAC 6 cut(s) 237, 431, 883, 1081, 1118, 1154
DdeI CTNAG 3 cut(s) 639, 703, 1191
DpnI GATC 6 cut(s) 39, 324, 333, 870, 894, 1287
DpnII GATC 6 cut(s) 37, 322, 331, 868, 892, 1285
DraIII CACNNNGTG 1 cut(s) 1232
Eam1104I CTCTTC 1 cut(s) 1233
EarI CTCTTC 1 cut(s) 1233
Eco130I CCWWGG 2 cut(s) 129, 477
Eco57I CTGAAG 1 cut(s) 738
Eco81I CCTNAGG 1 cut(s) 1191
EcoRII CCWGG 1 cut(s) 628
EcoT14I CCWWGG 2 cut(s) 129, 477
EcoT22I ATGCAT 1 cut(s) 731
ErhI CCWWGG 2 cut(s) 129, 477
FaeI CATG 8 cut(s) 124, 133, 199, 329, 461, 571, 712, 717
FaqI GGGAC 3 cut(s) 410, 758, 1344
FatI CATG 8 cut(s) 120, 129, 195, 325, 457, 567, 708, 713
FauI CCCGC 1 cut(s) 678
FbaI TGATCA 2 cut(s) 322, 331
Fnu4HI GCNGC 3 cut(s) 349, 474, 940
FokI GGATG 3 cut(s) 83, 212, 816
Fsp4HI GCNGC 3 cut(s) 349, 474, 940
FspBI CTAG 4 cut(s) 159, 906, 1014, 1323
GlaI GCGC 1 cut(s) 63
GluI GCNGC 3 cut(s) 349, 474, 940
HaeIII GGCC 2 cut(s) 252, 782
HapII CCGG 2 cut(s) 100, 776
HhaI GCGC 1 cut(s) 64
Hin1II CATG 8 cut(s) 124, 133, 199, 329, 461, 571, 712, 717
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HincII GTYRAC 1 cut(s) 1252
HindII GTYRAC 1 cut(s) 1252
HindIII AAGCTT 2 cut(s) 438, 750
HinfI GANTC 6 cut(s) 103, 112, 497, 539, 902, 916
HpaII CCGG 2 cut(s) 100, 776
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 4 cut(s) 85, 136, 448, 1252
Hpy188I TCNGA 4 cut(s) 37, 496, 538, 1021
Hpy188III TCNNGA 9 cut(s) 100, 317, 326, 378, 855, 866, 1043, 1190, 1213
Hpy8I GTNNAC 4 cut(s) 85, 136, 448, 1252
HpyAV CCTTC 4 cut(s) 117, 501, 861, 1192
HpyCH4III ACNGT 5 cut(s) 314, 600, 745, 991, 1311
HpyCH4IV ACGT 3 cut(s) 239, 825, 1272
HpyCH4V TGCA 7 cut(s) 351, 402, 619, 666, 729, 1004, 1220
HpyF10VI GCNNNNNNNGC 3 cut(s) 286, 479, 667
HpyF3I CTNAG 3 cut(s) 639, 703, 1191
HpySE526I ACGT 3 cut(s) 239, 825, 1272
Hsp92II CATG 8 cut(s) 124, 133, 199, 329, 461, 571, 712, 717
HspAI GCGC 1 cut(s) 62
Kpn2I TCCGGA 1 cut(s) 99
Ksp22I TGATCA 2 cut(s) 322, 331
Kzo9I GATC 6 cut(s) 37, 322, 331, 868, 892, 1285
LmnI GCTCC 1 cut(s) 794
Lsp1109I GCAGC 2 cut(s) 335, 460
LweI GCATC 1 cut(s) 41
MaeI CTAG 4 cut(s) 159, 906, 1014, 1323
MaeII ACGT 3 cut(s) 239, 825, 1272
MaeIII GTNAC 1 cut(s) 314
MalI GATC 6 cut(s) 39, 324, 333, 870, 894, 1287
MboI GATC 6 cut(s) 37, 322, 331, 868, 892, 1285
MboII GAAGA 3 cut(s) 730, 1247, 1250
MflI RGATCY 1 cut(s) 37
MluCI AATT 9 cut(s) 166, 184, 255, 290, 671, 1113, 1329, 1349, 1363
MlyI GAGTC 2 cut(s) 121, 910
Mph1103I ATGCAT 1 cut(s) 731
MroI TCCGGA 1 cut(s) 99
MseI TTAA 3 cut(s) 165, 246, 1366
MslI CAYNNNNRTG 1 cut(s) 468
MspA1I CMGCKG 1 cut(s) 222
MspI CCGG 2 cut(s) 100, 776
MspR9I CCNGG 2 cut(s) 630, 776
MvaI CCWGG 1 cut(s) 630
MwoI GCNNNNNNNGC 3 cut(s) 286, 479, 667
NciI CCSGG 1 cut(s) 776
NcoI CCATGG 1 cut(s) 129
NdeII GATC 6 cut(s) 37, 322, 331, 868, 892, 1285
NlaIII CATG 8 cut(s) 124, 133, 199, 329, 461, 571, 712, 717
NlaIV GGNNCC 3 cut(s) 144, 996, 1188
NmuCI GTSAC 1 cut(s) 314
NsiI ATGCAT 1 cut(s) 731
PagI TCATGA 1 cut(s) 325
PfeI GAWTC 4 cut(s) 103, 497, 539, 902
PflMI CCANNNNNTGG 2 cut(s) 18, 714
PfoI TCCNGGA 1 cut(s) 774
PkrI GCNGC 3 cut(s) 350, 475, 941
PleI GAGTC 2 cut(s) 120, 910
PpsI GAGTC 2 cut(s) 120, 910
PshBI ATTAAT 1 cut(s) 165
PsiI TTATAA 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 628
PspGI CCWGG 1 cut(s) 628
PspN4I GGNNCC 3 cut(s) 144, 996, 1188
PstI CTGCAG 1 cut(s) 1222
PsuI RGATCY 1 cut(s) 37
RsaI GTAC 6 cut(s) 238, 432, 884, 1082, 1119, 1155
RsaNI GTAC 6 cut(s) 237, 431, 883, 1081, 1118, 1154
RseI CAYNNNNRTG 1 cut(s) 468
SaqAI TTAA 3 cut(s) 165, 246, 1366
SatI GCNGC 3 cut(s) 349, 474, 940
Sau3AI GATC 6 cut(s) 37, 322, 331, 868, 892, 1285
SchI GAGTC 2 cut(s) 121, 910
ScrFI CCNGG 2 cut(s) 630, 776
SfaNI GCATC 1 cut(s) 41
SfcI CTRYAG 2 cut(s) 511, 1218
SmiMI CAYNNNNRTG 1 cut(s) 468
Sse9I AATT 9 cut(s) 166, 184, 255, 290, 671, 1113, 1329, 1349, 1363
SsiI CCGC 4 cut(s) 91, 222, 685, 939
SspMI CTAG 4 cut(s) 159, 906, 1014, 1323
StyD4I CCNGG 2 cut(s) 628, 774
StyI CCWWGG 2 cut(s) 129, 477
TaaI ACNGT 5 cut(s) 314, 600, 745, 991, 1311
TaiI ACGT 3 cut(s) 242, 828, 1275
TaqI TCGA 4 cut(s) 110, 298, 607, 818
TasI AATT 9 cut(s) 166, 184, 255, 290, 671, 1113, 1329, 1349, 1363
TatI WGTACW 1 cut(s) 1080
TauI GCSGC 1 cut(s) 942
TfiI GAWTC 4 cut(s) 103, 497, 539, 902
Tru1I TTAA 3 cut(s) 165, 246, 1366
Tru9I TTAA 3 cut(s) 165, 246, 1366
TscAI CASTG 2 cut(s) 605, 1188
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 2 cut(s) 348, 473
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 3 cut(s) 109, 537, 573
TspGWI ACGGA 3 cut(s) 532, 609, 807
TspRI CASTG 2 cut(s) 605, 1188
Van91I CCANNNNNTGG 2 cut(s) 18, 714
VspI ATTAAT 1 cut(s) 165
XapI RAATTY 1 cut(s) 1349
XspI CTAG 4 cut(s) 159, 906, 1014, 1323
Zsp2I ATGCAT 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.